CB304763

Overview
NameCB304763
Unique NameCB304763
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARL11_BOVIN (ADP-ribosylation factor-like protein 11 OS=Bos taurus GN=ARL11 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.506e-20
Identity = 46/114 (40.35%), Postives = 72/114 (63.16%), Query Frame = -1
Query:  289 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 630
            ++S T+WDVGGQ ++R  W+ + + T  L++V+DS D  R+ EA  EL  +L++  +    LLV ANKQ++P A++  EI D+LGL     R W +++  A +G GL E L+ L
Sbjct:   56 HVSLTLWDVGGQSQLRASWKDHLEGTDILVYVLDSTDEARLPEAVAELREVLDDPSVASVPLLVLANKQEVPQALSLPEIRDRLGLQGFLGRSWDLRACSALTGAGLPEALESL 169          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARL11_MOUSE (ADP-ribosylation factor-like protein 11 OS=Mus musculus GN=Arl11 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.507e-19
Identity = 43/114 (37.72%), Postives = 69/114 (60.53%), Query Frame = -1
Query:  289 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 630
            ++S T+WD+GGQ ++R  W+ Y +    L++V+DS D  R+ EA  EL  +L +  + G   LV ANKQ+ P A+   EI ++LGL   ++  W +++  A +G+GL E L  L
Sbjct:   56 HVSLTLWDIGGQTQLRATWKDYLEGIDLLVYVLDSTDEARLPEAVAELKEVLEDPNMAGVPFLVLANKQEAPGALPLLEIRNRLGLEGFQKHCWELRACSALTGQGLQEALQSL 169          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARL11_HUMAN (ADP-ribosylation factor-like protein 11 OS=Homo sapiens GN=ARL11 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.507e-19
Identity = 45/125 (36.00%), Postives = 74/125 (59.20%), Query Frame = -1
Query:  256 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA*SC 630
            ++S T+WDVGGQ  +R  W+ Y + T  L++V+DS D  R+ E+  EL  +LN+  + G   LV ANKQ+ P+A+   +I ++L L   +   W ++   A +GEGL E L  L + + +++  C
Sbjct:   56 HVSLTLWDVGGQAPLRASWKDYLEGTDILVYVLDSTDEARLPESAAELTEVLNDPNMAGVPFLVLANKQEAPDALPLLKIRNRLSLERFQDHCWELRGCSALTGEGLPEALQSLWSLLKSRSCMC 180          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARL8B_RAT (ADP-ribosylation factor-like protein 8B OS=Rattus norvegicus GN=Arl8b PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.733e-18
Identity = 36/114 (31.58%), Postives = 71/114 (62.28%), Query Frame = -1
Query:  289 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 630
            N++  +WD+GGQ + R +W  Y +    +++++D+ DR++I  +R+ELH +L++ +L+G  +LV  NK+DLPNA++  ++ +K+ L +++ R     S      + +   L WL
Sbjct:   64 NVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 177          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARL8B_MOUSE (ADP-ribosylation factor-like protein 8B OS=Mus musculus GN=Arl8b PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.733e-18
Identity = 36/114 (31.58%), Postives = 71/114 (62.28%), Query Frame = -1
Query:  289 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 630
            N++  +WD+GGQ + R +W  Y +    +++++D+ DR++I  +R+ELH +L++ +L+G  +LV  NK+DLPNA++  ++ +K+ L +++ R     S      + +   L WL
Sbjct:   64 NVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 177          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARL8B_HUMAN (ADP-ribosylation factor-like protein 8B OS=Homo sapiens GN=ARL8B PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.733e-18
Identity = 36/114 (31.58%), Postives = 71/114 (62.28%), Query Frame = -1
Query:  289 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 630
            N++  +WD+GGQ + R +W  Y +    +++++D+ DR++I  +R+ELH +L++ +L+G  +LV  NK+DLPNA++  ++ +K+ L +++ R     S      + +   L WL
Sbjct:   64 NVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 177          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARL8B_MACFA (ADP-ribosylation factor-like protein 8B OS=Macaca fascicularis GN=ARL8B PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.570e-18
Identity = 36/114 (31.58%), Postives = 71/114 (62.28%), Query Frame = -1
Query:  289 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 630
            N++  +WD+GGQ + R +W  Y +    +++++D+ DR++I  +R+ELH +L++ +L+G  +LV  NK+DLPNA++  ++ +K+ L +++ R     S      + +   L WL
Sbjct:   64 NVTIKIWDIGGQPRYRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 177          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: AR8BA_DANRE (ADP-ribosylation factor-like protein 8B-A OS=Danio rerio GN=arl8ba PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.570e-18
Identity = 36/114 (31.58%), Postives = 71/114 (62.28%), Query Frame = -1
Query:  289 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 630
            N++  +WD+GGQ + R +W  Y +    ++++VD+ DR+++  +R+ELH +L++ +L+G  +LV  NK+DLPNA++  ++ +K+ L +++ R     S      + +   L WL
Sbjct:   64 NVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMVDAADREKVEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLAAIQDREICCYSISCKEKDNIDITLQWL 177          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARL8B_BOVIN (ADP-ribosylation factor-like protein 8B OS=Bos taurus GN=ARL8B PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.953e-18
Identity = 35/114 (30.70%), Postives = 71/114 (62.28%), Query Frame = -1
Query:  289 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 630
            N++  +WD+GGQ + + +W  Y +    +++++D+ DR++I  +R+ELH +L++ +L+G  +LV  NK+DLPNA++  ++ +K+ L +++ R     S      + +   L WL
Sbjct:   64 NVTIKIWDIGGQPRFQSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 177          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARL11_RAT (ADP-ribosylation factor-like protein 11 OS=Rattus norvegicus GN=Arl11 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.356e-17
Identity = 40/109 (36.70%), Postives = 66/109 (60.55%), Query Frame = -1
Query:  304 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 630
            ++S T+WD+GGQ ++R  W+ Y +    L++V+DS D  R+ EA  EL  +L +  + G   LV ANKQ+ P+A+   EI ++L L   +   W +++  A +G+GL E
Sbjct:   54 HVSLTLWDIGGQTQLRATWKDYLEGIDLLVYVLDSTDEARLPEAVAELEEVLEDPNMAGVPFLVLANKQEAPDALPLLEIRNRLDLERFQDHCWELRACSALTGQGLQE 162          
The following BLAST results are available for this feature:
BLAST of CB304763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
ARL11_BOVIN6.506e-2040.35ADP-ribosylation factor-like protein 11 OS=Bos tau... [more]
ARL11_MOUSE5.507e-1937.72ADP-ribosylation factor-like protein 11 OS=Mus mus... [more]
ARL11_HUMAN5.507e-1936.00ADP-ribosylation factor-like protein 11 OS=Homo sa... [more]
ARL8B_RAT2.733e-1831.58ADP-ribosylation factor-like protein 8B OS=Rattus ... [more]
ARL8B_MOUSE2.733e-1831.58ADP-ribosylation factor-like protein 8B OS=Mus mus... [more]
ARL8B_HUMAN2.733e-1831.58ADP-ribosylation factor-like protein 8B OS=Homo sa... [more]
ARL8B_MACFA3.570e-1831.58ADP-ribosylation factor-like protein 8B OS=Macaca ... [more]
AR8BA_DANRE3.570e-1831.58ADP-ribosylation factor-like protein 8B-A OS=Danio... [more]
ARL8B_BOVIN7.953e-1830.70ADP-ribosylation factor-like protein 8B OS=Bos tau... [more]
ARL11_RAT1.356e-1736.70ADP-ribosylation factor-like protein 11 OS=Rattus ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_E06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_E06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304763 ID=CB304763; Name=CB304763; organism=Citrus sinensis; type=EST; length=642bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTGGTGCACCAAATTAGTT
TAAATTACAGATATCTAAACCGAGCCAAAAACCTTGGAGTACATGTATCC
AACCAACAATTCTTCTAGTACAATATAGTTGTAAAGATCCTAGGGCCAAA
ACAACACAACAACCCAACCGTCTCAAACAAAAAGGGTTAAAAAAGAAAAA
AAATAGATAATACTCACCCCTGCATCCAGAATCGCCAGTCCGCAAAAAGA
TCTTAACAGCTTCAGGCCTTGTTAGCGATGTTGTTGGAGAGCCAATCCAG
ACCTTCATAAAGACCCTCACCAGAGGTTGCACAGGTGCTCTGGATGTACC
AGTGGCGCTGCCTGAGGGAGTGGAGGCCAAGCTTATCAGTAATCTCAGCA
GCATTCATTGCATTTGGAAGATCCTGTTTGTTAGCAAATACAAGCAACAC
TGCACCTCGCAGCTCGTCCTCATTCAACATCCTATGCAATTCATCCCTTG
CTTCTACAATACGGTCTCTGTCATTGCTGTCCACAACAAAAATGAGACCT
TGAGTGTTCTGGAAATAATGCCTCCACAAGGGACGAATCTTGTCCTGGCC
ACCAACATCCCACACAGTGAAACTGATGTTCTTATATTCAAC
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