CB304763

Overview
NameCB304763
Unique NameCB304763
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARL8B_PONAB (ADP-ribosylation factor-like protein 8B OS=Pongo abelii GN=ARL8B PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.022e-17
Identity = 35/114 (30.70%), Postives = 70/114 (61.40%), Query Frame = -1
Query:  289 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 630
            N++  +WD+GGQ + R +W  Y +    +++++D+  R++I  +R+ELH +L++ +L+G  +LV  NK+DLPNA++  ++ +K+ L +++ R     S      + +   L WL
Sbjct:   64 NVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAAYREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 177          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARL8A_HUMAN (ADP-ribosylation factor-like protein 8A OS=Homo sapiens GN=ARL8A PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.155e-17
Identity = 35/114 (30.70%), Postives = 70/114 (61.40%), Query Frame = -1
Query:  289 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 630
            N++  +WD+GGQ + R +W  Y +    ++++VD+ D+++I  +++ELH +L++ +L+G  +LV  NK+DLP A++  E+ +K+ L +++ R     S      + +   L WL
Sbjct:   64 NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 177          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARL8A_CHICK (ADP-ribosylation factor-like protein 8A OS=Gallus gallus GN=ARL8A PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.155e-17
Identity = 35/114 (30.70%), Postives = 70/114 (61.40%), Query Frame = -1
Query:  289 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 630
            N++  +WD+GGQ + R +W  Y +    ++++VD+ D+++I  +++ELH +L++ +L+G  +LV  NK+DLP A++  E+ +K+ L +++ R     S      + +   L WL
Sbjct:   64 NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 177          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARL8A_XENTR (ADP-ribosylation factor-like protein 8A OS=Xenopus tropicalis GN=arl8a PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.793e-17
Identity = 34/114 (29.82%), Postives = 70/114 (61.40%), Query Frame = -1
Query:  289 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 630
            N++  +WD+GGQ + R +W  Y +    ++++VD+ D+D+I  +++ELH +L++ +L+G  +LV  NK+D+P A++  E+ +++ L +++ R     S      + +   L WL
Sbjct:   64 NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQDKIEASKNELHNLLDKAQLQGIPVLVLGNKRDIPGALDEKELIERMNLSAIQDREICCYSISCKEKDNIDITLQWL 177          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARL8_DROME (ADP-ribosylation factor-like protein 8 OS=Drosophila melanogaster GN=Gie PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.500e-16
Identity = 36/114 (31.58%), Postives = 67/114 (58.77%), Query Frame = -1
Query:  289 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 630
            N++  VWD+GGQ + R +W  Y +    ++++VD+ D D++  +R+ELH +L++ +L G  +LV  NK+DLP A++   + +++ L S++ R     S      + +   L WL
Sbjct:   64 NVTIKVWDIGGQPRFRSMWERYCRGVNAIVYMVDAADLDKLEASRNELHSLLDKPQLAGIPVLVLGNKRDLPGALDETGLIERMNLSSIQDREICCYSISCKEKDNIDITLQWL 177          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: AR13B_DANRE (ADP-ribosylation factor-like protein 13B OS=Danio rerio GN=arl13b PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.959e-16
Identity = 48/124 (38.71%), Postives = 70/124 (56.45%), Query Frame = -1
Query:  274 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH---WYIQSTCATSGEG------LYEGLDWLSNNIA 618
            T++D+GG  +IR +W++Y+  + G++FVVDS+D  RI E RD +  +L    + G  +LV ANKQD   AM  A+I + L L  L   +     I+   A  G G      +  GL+WL NNIA
Sbjct:   68 TIFDLGGGKRIRGIWKNYYSESYGVVFVVDSSDVQRIQETRDTMAEVLRHPRIAGKPVLVLANKQDQDGAMAEADIIETLSLEKLVNENKCLCQIEPCSAVLGYGKKVDKSIKNGLNWLLNNIA 191          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARL8A_MOUSE (ADP-ribosylation factor-like protein 8A OS=Mus musculus GN=Arl8a PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.364e-16
Identity = 34/114 (29.82%), Postives = 69/114 (60.53%), Query Frame = -1
Query:  289 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 630
            N++  +WD+GGQ + R +W  Y +    ++++VD+ D+++I  +++ELH +L++ +L+G  +LV  NK+DL  A++  E+ +K+ L +++ R     S      + +   L WL
Sbjct:   64 NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLAGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 177          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARL8_DICDI (ADP-ribosylation factor-like protein 8 OS=Dictyostelium discoideum GN=arl8 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.828e-15
Identity = 39/114 (34.21%), Postives = 61/114 (53.51%), Query Frame = -1
Query:  289 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 630
            N++  +WD+GGQ + R +W  Y +    ++FVVDS DR++  +++  L  ++N+  L    LLV ANK DLPN+    E+   L L  +  R     S  A +   +   LDWL
Sbjct:   63 NVTIKLWDIGGQPRFRSMWERYCRGVNAIVFVVDSADREKFEQSKQALQDLINKPPLAKIPLLVVANKNDLPNSAGVDEMIQNLDLRGIVGREVCCYSISAKNSVNIDITLDWL 176          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: AR13B_HUMAN (ADP-ribosylation factor-like protein 13B OS=Homo sapiens GN=ARL13B PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.828e-15
Identity = 45/124 (36.29%), Postives = 71/124 (57.26%), Query Frame = -1
Query:  274 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH---WYIQSTCATSGEG------LYEGLDWLSNNIA 618
            T++D+GG  +IR +W++Y+  + G+IFVVDS+D +R+ E ++ +  ML    + G  +LV ANKQD   A+  A++ + L L  L   H     I+   A SG G      + +GL WL + IA
Sbjct:   68 TIFDLGGGIRIRGIWKNYYAESYGVIFVVDSSDEERMEETKEAMSEMLRHPRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAISGYGKKIDKSIKKGLYWLLHVIA 191          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARL3_YEAST (ADP-ribosylation factor-like protein 3 OS=Saccharomyces cerevisiae GN=ARL3 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.694e-15
Identity = 38/111 (34.23%), Postives = 67/111 (60.36%), Query Frame = -1
Query:  289 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 612
            WDVGGQ+ +R +W  Y+    G+IF+VDS+DR+R+ E    L  ++ ++E+ G  +L+ ANKQD  + M   +  E+ +K+  H +  R   +    A +GEG+ + ++W+
Sbjct:   73 WDVGGQESLRSMWSEYYSLCHGIIFIVDSSDRERLDECSTTLQSVVMDEEIEGVPILMLANKQDRQDRMEVQDIKEVFNKIAEH-ISARDSRVLPISALTGEGVKDAIEWM 182          
The following BLAST results are available for this feature:
BLAST of CB304763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
ARL8B_PONAB3.022e-1730.70ADP-ribosylation factor-like protein 8B OS=Pongo a... [more]
ARL8A_HUMAN5.155e-1730.70ADP-ribosylation factor-like protein 8A OS=Homo sa... [more]
ARL8A_CHICK5.155e-1730.70ADP-ribosylation factor-like protein 8A OS=Gallus ... [more]
ARL8A_XENTR8.793e-1729.82ADP-ribosylation factor-like protein 8A OS=Xenopus... [more]
ARL8_DROME1.500e-1631.58ADP-ribosylation factor-like protein 8 OS=Drosophi... [more]
AR13B_DANRE1.959e-1638.71ADP-ribosylation factor-like protein 13B OS=Danio ... [more]
ARL8A_MOUSE4.364e-1629.82ADP-ribosylation factor-like protein 8A OS=Mus mus... [more]
ARL8_DICDI2.828e-1534.21ADP-ribosylation factor-like protein 8 OS=Dictyost... [more]
AR13B_HUMAN2.828e-1536.29ADP-ribosylation factor-like protein 13B OS=Homo s... [more]
ARL3_YEAST3.694e-1534.23ADP-ribosylation factor-like protein 3 OS=Saccharo... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_E06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_E06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304763 ID=CB304763; Name=CB304763; organism=Citrus sinensis; type=EST; length=642bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTGGTGCACCAAATTAGTT
TAAATTACAGATATCTAAACCGAGCCAAAAACCTTGGAGTACATGTATCC
AACCAACAATTCTTCTAGTACAATATAGTTGTAAAGATCCTAGGGCCAAA
ACAACACAACAACCCAACCGTCTCAAACAAAAAGGGTTAAAAAAGAAAAA
AAATAGATAATACTCACCCCTGCATCCAGAATCGCCAGTCCGCAAAAAGA
TCTTAACAGCTTCAGGCCTTGTTAGCGATGTTGTTGGAGAGCCAATCCAG
ACCTTCATAAAGACCCTCACCAGAGGTTGCACAGGTGCTCTGGATGTACC
AGTGGCGCTGCCTGAGGGAGTGGAGGCCAAGCTTATCAGTAATCTCAGCA
GCATTCATTGCATTTGGAAGATCCTGTTTGTTAGCAAATACAAGCAACAC
TGCACCTCGCAGCTCGTCCTCATTCAACATCCTATGCAATTCATCCCTTG
CTTCTACAATACGGTCTCTGTCATTGCTGTCCACAACAAAAATGAGACCT
TGAGTGTTCTGGAAATAATGCCTCCACAAGGGACGAATCTTGTCCTGGCC
ACCAACATCCCACACAGTGAAACTGATGTTCTTATATTCAAC
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