CB304763

Overview
NameCB304763
Unique NameCB304763
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARFRP_BOVIN (ADP-ribosylation factor-related protein 1 OS=Bos taurus GN=ARFRP1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.694e-15
Identity = 35/110 (31.82%), Postives = 65/110 (59.09%), Query Frame = -1
Query:  289 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLG--LHSLRQRHWYIQSTCATSGEGLYEGLDWL 612
            WD+GGQ++++ LW  Y+    G+I+V+DS D +R+ E++    +M+  + L G  +LV ANKQD+   ++  +I          + +R    Q+  A +G+G+ EG++W+
Sbjct:   74 WDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKQAFEKMVTSEALDGVPILVLANKQDVETCLSIPDIKTAFSDCASKIGRRDCLTQACSALTGKGVREGIEWM 183          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARFRP_RAT (ADP-ribosylation factor-related protein 1 OS=Rattus norvegicus GN=Arfrp1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.301e-15
Identity = 37/115 (32.17%), Postives = 70/115 (60.87%), Query Frame = -1
Query:  289 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEI-------TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 612
            WD+GGQ++++ LW  Y+    G+I+V+DS D +R+ E+++   ++++ + L G  +LV ANKQD+   ++  +I       T K+G     +R    Q+  A +G+G+ EG++W+
Sbjct:   74 WDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEKVVSSEALDGVPILVLANKQDVETCLSIPDIKTAFSDCTCKIG-----RRDCLTQACSALTGKGVREGIEWM 183          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARFRP_PONAB (ADP-ribosylation factor-related protein 1 OS=Pongo abelii GN=ARFRP1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.301e-15
Identity = 37/115 (32.17%), Postives = 68/115 (59.13%), Query Frame = -1
Query:  289 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEI-------TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 612
            WD+GGQ++++ LW  Y+    G+I+V+DS D +R+ E++    +++  + L G  +LV ANKQD+   ++  +I       T K+G     +R    Q+  A +G+G+ EG++W+
Sbjct:   74 WDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLAESKQAFEKVVTSEALCGVPVLVLANKQDVETCLSIPDIKTAFSDCTSKIG-----RRDCLTQACSALTGKGVREGIEWM 183          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARFRP_MOUSE (ADP-ribosylation factor-related protein 1 OS=Mus musculus GN=Arfrp1 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.301e-15
Identity = 37/115 (32.17%), Postives = 70/115 (60.87%), Query Frame = -1
Query:  289 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEI-------TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 612
            WD+GGQ++++ LW  Y+    G+I+V+DS D +R+ E+++   ++++ + L G  +LV ANKQD+   ++  +I       T K+G     +R    Q+  A +G+G+ EG++W+
Sbjct:   74 WDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEKVVSSEALDGVPILVLANKQDVETCLSIPDIKTAFSDCTCKIG-----RRDCLTQACSALTGKGVREGIEWM 183          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARFRP_HUMAN (ADP-ribosylation factor-related protein 1 OS=Homo sapiens GN=ARFRP1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.301e-15
Identity = 37/115 (32.17%), Postives = 68/115 (59.13%), Query Frame = -1
Query:  289 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEI-------TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 612
            WD+GGQ++++ LW  Y+    G+I+V+DS D +R+ E++    +++  + L G  +LV ANKQD+   ++  +I       T K+G     +R    Q+  A +G+G+ EG++W+
Sbjct:   74 WDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLAESKQAFEKVVTSEALCGVPVLVLANKQDVETCLSIPDIKTAFSDCTSKIG-----RRDCLTQACSALTGKGVREGIEWM 183          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: SAR1_MAGGR (Small COPII coat GTPase SAR1 OS=Magnaporthe grisea GN=SAR1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.230e-15
Identity = 43/129 (33.33%), Postives = 68/129 (52.71%), Query Frame = -1
Query:  277 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLH-----------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 630
            N+ FT +D+GG  + R LW+ YF    G++F+VD+ D DR  EA+ EL  +L+ +EL     ++  NK D P A++  E+  +LGL+            +R    ++ S     G G  EG+ WLS  +
Sbjct:   63 NVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAKDHDRFPEAKAELDALLSMEELAKVPFVILGNKIDHPEAISEEELRHQLGLYQTTGKGKVPLEGIRPIEVFMCSVVMRQGYG--EGIRWLSQYV 189          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: SAR1_YEAST (Small COPII coat GTPase SAR1 OS=Saccharomyces cerevisiae GN=SAR1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.075e-14
Identity = 45/125 (36.00%), Postives = 63/125 (50.40%), Query Frame = -1
Query:  277 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-------QRHWYIQSTCATSGEGLYEGLDWLSNNI 630
            NI FT +D+GG  + R LW+ YF    G++F+VD+ D +R  EAR EL  + N  EL+    ++  NK D PNA++ AE+   LGL +         QR   +         G  E   WLS  I
Sbjct:   66 NIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: SAR1_CANGA (Small COPII coat GTPase SAR1 OS=Candida glabrata GN=SAR1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.075e-14
Identity = 46/125 (36.80%), Postives = 62/125 (49.60%), Query Frame = -1
Query:  277 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-------QRHWYIQSTCATSGEGLYEGLDWLSNNI 630
            NI FT +D+GG  + R LW+ YF    G++F+VDS D DR  EAR EL  + N  EL+    ++  NK D  NA++ AE+   LGL +         QR   +         G  E   WLS  I
Sbjct:   65 NIKFTTFDLGGHVQARRLWKDYFPEVNGIVFLVDSADPDRFDEARVELDALFNITELKDVPFVILGNKIDAANAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 189          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: SAR1_USTMA (Small COPII coat GTPase SAR1 OS=Ustilago maydis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.833e-14
Identity = 42/128 (32.81%), Postives = 65/128 (50.78%), Query Frame = -1
Query:  277 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLH-----------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 627
            + FT +D+GG  + R LW+ YF    G++F+VD+ D +R  EAR EL  +L+ +EL     L+  NK D P A++  E+   +GL+            +R    ++ S     G G  EG  W+S  I
Sbjct:   64 VKFTTYDLGGHQQARRLWKDYFPEVDGIVFLVDTQDHERFAEARAELDALLSIEELSSVPFLILGNKIDAPGAVSEEELRQAIGLYQTTGKGKVPLKDIRPIEIFMCSVVMRQGYG--EGFRWISQYI 189          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: AR13B_MOUSE (ADP-ribosylation factor-like protein 13B OS=Mus musculus GN=Arl13b PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.833e-14
Identity = 43/124 (34.68%), Postives = 70/124 (56.45%), Query Frame = -1
Query:  274 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH---WYIQSTCATSGEG------LYEGLDWLSNNIA 618
            T++D+GG  +IR +W++Y+  + G+IFVVDS+D +R+ E ++ +  +L    + G  +LV ANKQD   A+  A++ + L L  L   H     I+   A  G G      + +GL WL + IA
Sbjct:   68 TIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLLHIIA 191          
The following BLAST results are available for this feature:
BLAST of CB304763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
ARFRP_BOVIN3.694e-1531.82ADP-ribosylation factor-related protein 1 OS=Bos t... [more]
ARFRP_RAT6.301e-1532.17ADP-ribosylation factor-related protein 1 OS=Rattu... [more]
ARFRP_PONAB6.301e-1532.17ADP-ribosylation factor-related protein 1 OS=Pongo... [more]
ARFRP_MOUSE6.301e-1532.17ADP-ribosylation factor-related protein 1 OS=Mus m... [more]
ARFRP_HUMAN6.301e-1532.17ADP-ribosylation factor-related protein 1 OS=Homo ... [more]
SAR1_MAGGR8.230e-1533.33Small COPII coat GTPase SAR1 OS=Magnaporthe grisea... [more]
SAR1_YEAST1.075e-1436.00Small COPII coat GTPase SAR1 OS=Saccharomyces cere... [more]
SAR1_CANGA1.075e-1436.80Small COPII coat GTPase SAR1 OS=Candida glabrata G... [more]
SAR1_USTMA1.833e-1432.81Small COPII coat GTPase SAR1 OS=Ustilago maydis GN... [more]
AR13B_MOUSE1.833e-1434.68ADP-ribosylation factor-like protein 13B OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_E06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_E06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304763 ID=CB304763; Name=CB304763; organism=Citrus sinensis; type=EST; length=642bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTGGTGCACCAAATTAGTT
TAAATTACAGATATCTAAACCGAGCCAAAAACCTTGGAGTACATGTATCC
AACCAACAATTCTTCTAGTACAATATAGTTGTAAAGATCCTAGGGCCAAA
ACAACACAACAACCCAACCGTCTCAAACAAAAAGGGTTAAAAAAGAAAAA
AAATAGATAATACTCACCCCTGCATCCAGAATCGCCAGTCCGCAAAAAGA
TCTTAACAGCTTCAGGCCTTGTTAGCGATGTTGTTGGAGAGCCAATCCAG
ACCTTCATAAAGACCCTCACCAGAGGTTGCACAGGTGCTCTGGATGTACC
AGTGGCGCTGCCTGAGGGAGTGGAGGCCAAGCTTATCAGTAATCTCAGCA
GCATTCATTGCATTTGGAAGATCCTGTTTGTTAGCAAATACAAGCAACAC
TGCACCTCGCAGCTCGTCCTCATTCAACATCCTATGCAATTCATCCCTTG
CTTCTACAATACGGTCTCTGTCATTGCTGTCCACAACAAAAATGAGACCT
TGAGTGTTCTGGAAATAATGCCTCCACAAGGGACGAATCTTGTCCTGGCC
ACCAACATCCCACACAGTGAAACTGATGTTCTTATATTCAAC
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