CB304763

Overview
NameCB304763
Unique NameCB304763
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: SAR1A_PONAB (GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.520e-11
Identity = 34/129 (26.36%), Postives = 66/129 (51.16%), Query Frame = -1 
Query:  277 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 627
            ++FT +D+GG ++ R +W++Y     G++F+VD  D  R+VE++ EL+ ++ ++ +    +L+  NK D  +A++  ++ +  GL+             L  R   +        +G  EG  WLS  I
Sbjct:   69 MTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 197
[Close]
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: SAR1A_HUMAN (GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.520e-11
Identity = 34/129 (26.36%), Postives = 66/129 (51.16%), Query Frame = -1 
Query:  277 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 627
            ++FT +D+GG ++ R +W++Y     G++F+VD  D  R+VE++ EL+ ++ ++ +    +L+  NK D  +A++  ++ +  GL+             L  R   +        +G  EG  WLS  I
Sbjct:   69 MTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 197
[Close]
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: SAR1B_MOUSE (GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.209e-11
Identity = 32/129 (24.81%), Postives = 65/129 (50.39%), Query Frame = -1 
Query:  277 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 627
            ++FT +D+GG  + R +W++Y     G++F+VD  D +R++E+++EL  ++ ++ +    +L+  NK D P A++   + +  GL+             L  R   +        +G  EG  W++  I
Sbjct:   69 MTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197
[Close]
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: SAR1B_HUMAN (GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.209e-11
Identity = 32/129 (24.81%), Postives = 65/129 (50.39%), Query Frame = -1 
Query:  277 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 627
            ++FT +D+GG  + R +W++Y     G++F+VD  D +R++E+++EL  ++ ++ +    +L+  NK D P A++   + +  GL+             L  R   +        +G  EG  W++  I
Sbjct:   69 MTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSISLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197
[Close]
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: SAR1B_CRIGR (GTP-binding protein SAR1b OS=Cricetulus griseus GN=SAR1B PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.209e-11
Identity = 32/129 (24.81%), Postives = 65/129 (50.39%), Query Frame = -1 
Query:  277 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 627
            ++FT +D+GG  + R +W++Y     G++F+VD  D +R++E+++EL  ++ ++ +    +L+  NK D P A++   + +  GL+             L  R   +        +G  EG  W++  I
Sbjct:   69 MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197
[Close]
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: SAR1B_RAT (GTP-binding protein SAR1b OS=Rattus norvegicus GN=Sar1b PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.416e-11
Identity = 32/129 (24.81%), Postives = 65/129 (50.39%), Query Frame = -1 
Query:  277 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 627
            ++FT +D+GG  + R +W++Y     G++F+VD  D +R++E+++EL  ++ ++ +    +L+  NK D P A++   + +  GL+             L  R   +        +G  EG  W++  I
Sbjct:   69 MTFTTFDLGGHLQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197
[Close]
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: SAR1B_PIG (GTP-binding protein SAR1b OS=Sus scrofa GN=SAR1B PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.416e-11
Identity = 32/129 (24.81%), Postives = 65/129 (50.39%), Query Frame = -1 
Query:  277 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 627
            ++FT +D+GG  + R +W++Y     G++F+VD  D +R++E+++EL  ++ ++ +    +L+  NK D P A++   + +  GL+             L  R   +        +G  EG  W++  I
Sbjct:   69 MTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197
[Close]
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: SAR1B_BOVIN (GTP-binding protein SAR1b OS=Bos taurus GN=SAR1B PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.416e-11
Identity = 32/129 (24.81%), Postives = 65/129 (50.39%), Query Frame = -1 
Query:  277 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 627
            ++FT +D+GG  + R +W++Y     G++F+VD  D +R++E+++EL  ++ ++ +    +L+  NK D P A++   + +  GL+             L  R   +        +G  EG  W++  I
Sbjct:   69 MTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGNVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197
The following BLAST results are available for this feature:
BLAST of CB304763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
SAR1A_PONAB5.520e-1126.36GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A... [more]
SAR1A_HUMAN5.520e-1126.36GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A... [more]
SAR1B_MOUSE7.209e-1124.81GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b... [more]
SAR1B_HUMAN7.209e-1124.81GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B... [more]
SAR1B_CRIGR7.209e-1124.81GTP-binding protein SAR1b OS=Cricetulus griseus GN... [more]
SAR1B_RAT9.416e-1124.81GTP-binding protein SAR1b OS=Rattus norvegicus GN=... [more]
SAR1B_PIG9.416e-1124.81GTP-binding protein SAR1b OS=Sus scrofa GN=SAR1B P... [more]
SAR1B_BOVIN9.416e-1124.81GTP-binding protein SAR1b OS=Bos taurus GN=SAR1B P... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_E06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_E06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304763 ID=CB304763; Name=CB304763; organism=Citrus sinensis; type=EST; length=642bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTGGTGCACCAAATTAGTT
TAAATTACAGATATCTAAACCGAGCCAAAAACCTTGGAGTACATGTATCC
AACCAACAATTCTTCTAGTACAATATAGTTGTAAAGATCCTAGGGCCAAA
ACAACACAACAACCCAACCGTCTCAAACAAAAAGGGTTAAAAAAGAAAAA
AAATAGATAATACTCACCCCTGCATCCAGAATCGCCAGTCCGCAAAAAGA
TCTTAACAGCTTCAGGCCTTGTTAGCGATGTTGTTGGAGAGCCAATCCAG
ACCTTCATAAAGACCCTCACCAGAGGTTGCACAGGTGCTCTGGATGTACC
AGTGGCGCTGCCTGAGGGAGTGGAGGCCAAGCTTATCAGTAATCTCAGCA
GCATTCATTGCATTTGGAAGATCCTGTTTGTTAGCAAATACAAGCAACAC
TGCACCTCGCAGCTCGTCCTCATTCAACATCCTATGCAATTCATCCCTTG
CTTCTACAATACGGTCTCTGTCATTGCTGTCCACAACAAAAATGAGACCT
TGAGTGTTCTGGAAATAATGCCTCCACAAGGGACGAATCTTGTCCTGGCC
ACCAACATCCCACACAGTGAAACTGATGTTCTTATATTCAAC
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