CB304764

Overview
NameCB304764
Unique NameCB304764
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:282..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: THIO_CHLLT (Thioredoxin OS=Chlorobium limicola f.sp. thiosulfatophilum GN=trxA PE=1 SV=5)

HSP 1 Score: 68.5514 bits (166), Expect = 1.147e-11
Identity = 32/85 (37.65%), Postives = 54/85 (63.53%), Query Frame = -1
Query:  168 VVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 416
            V+VDF ASWCGPC  + P + +LA       +  K++VDE  ++A  + + ++PT + +K GK+VD++VGA  K  + + I +H+
Sbjct:   23 VLVDFWASWCGPCMMLGPVIEQLADDYEGKAIIAKLNVDENPNIAGQYGIRSIPTMLIIKGGKVVDQMVGALPKNMIAKKIDEHI 107          
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: TRXF_BRANA (Thioredoxin F-type, chloroplastic OS=Brassica napus GN=TRXF PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.957e-11
Identity = 33/89 (37.08%), Postives = 55/89 (61.80%), Query Frame = -1
Query:  153 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 416
            VV+D    WCGPC+ IAP    L++K  +V+FLK+D + E + +A +  +  +PTF  LK+ ++V +V GAK ++L   I    + +S+
Sbjct:   93 VVLDMYTQWCGPCKVIAPKYKALSEKYEDVVFLKLDCNPENRPLAKELGIRVVPTFKILKDNQVVKEVTGAKYDDLVAAIETARSASSS 181          
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: TXND2_MOUSE (Thioredoxin domain-containing protein 2 OS=Mus musculus GN=Txndc2 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.360e-11
Identity = 30/81 (37.04%), Postives = 51/81 (62.96%), Query Frame = -1
Query:  174 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAK 416
            V VDF+A+WCGPCR + P    L+ K  +V+FL+VD ++ + +  D  +  +PTF F K  + V +  GA   +L+++I++
Sbjct:  433 VAVDFSAAWCGPCRMMKPLFHSLSLKHEDVIFLEVDTEDCEQLVQDCEIFHLPTFQFYKNEEKVGEFSGALVGKLERSISE 513          
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: TRXM_ORYSJ (Thioredoxin M-type, chloroplastic OS=Oryza sativa subsp. japonica GN=TRXM PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.360e-11
Identity = 33/87 (37.93%), Postives = 56/87 (64.37%), Query Frame = -1
Query:  162 VVVDFTASWCGPCRFIAPFLAELAKK-LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHLAT 416
            V+V+F A WCGPCR IAP + ELAK+ +  +   KV+ D+  ++AT++ + ++PT +  K G+  + V+GA  K  L   I K++++
Sbjct:   86 VLVEFWAPWCGPCRMIAPVIDELAKEYVGKIKCCKVNTDDSPNIATNYGIRSIPTVLMFKNGEKKESVIGAVPKTTLATIIDKYVSS 172          
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: THIO1_CORNE (Thioredoxin C-1 OS=Corynebacterium nephridii PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.360e-11
Identity = 31/71 (43.66%), Postives = 46/71 (64.79%), Query Frame = -1
Query:  207 VVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA 416
            VVVDF A WCGPC+ IAP L E+A ++   V   KV++DE   +A  + V ++PT +  K+G++   +VGA
Sbjct:   21 VVVDFWAEWCGPCKMIAPALDEIATEMAGQVKIAKVNIDENPELAAQFGVRSIPTLLMFKDGELAANMVGA 91          
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: THIO_MYCTU (Thioredoxin OS=Mycobacterium tuberculosis GN=trxA PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.438e-11
Identity = 30/72 (41.67%), Postives = 49/72 (68.06%), Query Frame = -1
Query:  204 VVVDFTASWCGPCRFIAPFLAELA-KKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK 416
            V+VDF A+WCGPC+ +AP L E+A ++  ++   K+DVD     A ++ V ++PT +  K+G+ V ++VGAK
Sbjct:   28 VLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAK 99          
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: THIO_MYCBO (Thioredoxin OS=Mycobacterium bovis GN=trxA PE=3 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.438e-11
Identity = 30/72 (41.67%), Postives = 49/72 (68.06%), Query Frame = -1
Query:  204 VVVDFTASWCGPCRFIAPFLAELA-KKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK 416
            V+VDF A+WCGPC+ +AP L E+A ++  ++   K+DVD     A ++ V ++PT +  K+G+ V ++VGAK
Sbjct:   28 VLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAK 99          
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: THIO_CHLAA (Thioredoxin OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=trxA PE=1 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 7.438e-11
Identity = 33/80 (41.25%), Postives = 50/80 (62.50%), Query Frame = -1
Query:  180 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 416
            VVVDF A WCGPCR IAP L +LA +    L + KV+ D+    A+   ++ +PT +  K+G+ V ++VGA+ E + + I
Sbjct:   23 VVVDFWAPWCGPCRVIAPILDKLAGEYAGRLTIAKVNTDDNVQYASQLGIQGIPTLVIFKDGREVGRLVGARPEAMYREI 102          
The following BLAST results are available for this feature:
BLAST of CB304764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
THIO_CHLLT1.147e-1137.65Thioredoxin OS=Chlorobium limicola f.sp. thiosulfa... [more]
TRXF_BRANA1.957e-1137.08Thioredoxin F-type, chloroplastic OS=Brassica napu... [more]
TXND2_MOUSE4.360e-1137.04Thioredoxin domain-containing protein 2 OS=Mus mus... [more]
TRXM_ORYSJ4.360e-1137.93Thioredoxin M-type, chloroplastic OS=Oryza sativa ... [more]
THIO1_CORNE4.360e-1143.66Thioredoxin C-1 OS=Corynebacterium nephridii PE=1 ... [more]
THIO_MYCTU7.438e-1141.67Thioredoxin OS=Mycobacterium tuberculosis GN=trxA ... [more]
THIO_MYCBO7.438e-1141.67Thioredoxin OS=Mycobacterium bovis GN=trxA PE=3 SV... [more]
THIO_CHLAA7.438e-1141.25Thioredoxin OS=Chloroflexus aurantiacus (strain AT... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_E09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_E09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304764 ID=CB304764; Name=CB304764; organism=Citrus sinensis; type=EST; length=419bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCAAACACACAAACAAACA
CAATCCCATAACCACTCTAATAAGTAAATTACAGACTGATAGCATATATT
GAGGTCTATAGCCTCTAAAGCCAAAAGGCAGGAGGATAGTTATAACTTAT
TAGGCAGAAGCAGTTGCCAGATGCTTGGCAATAGTCTGCTGCAGTTCCTC
TTTCTTTGCTCCAACCACCTTGTCCACAATCTTCCCCTCTTTCAGGAACA
TGAAAGTTGGCATGGCCTCCACTGCCCAGTCAGTGGCAACACTCTTCAGT
TCATCCACATCAACCTTCAGAAACAGGACATTAGGCAGTTTCTTGGCCAG
CTCTGCCAAGAAAGGAGCAATGAAACGGCATGGTCCGCACCATGAAGCAG
TGAAATCAACAACAACCCC
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