CB304766

Overview
NameCB304766
Unique NameCB304766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIL1_GIBZE (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Gibberella zeae GN=CYP1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.336e-22
Identity = 55/120 (45.83%), Postives = 71/120 (59.17%), Query Frame = -2
Query:  311 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFV-LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINS 667
            +GY Y    FHRII +FM+Q             SI+G  FEDE    LKH G G+LSMANAGPNTNGSQFF+    TPWLD +H +FG V  GM  ++++  V+T   D P    +I+ +
Sbjct:   36 RGY-YDNTIFHRIIPNFMVQGGDPTGTGRGGS-SIFGEKFEDEIDPGLKHTGAGILSMANAGPNTNGSQFFVTLAPTPWLDGKHTIFGRVKSGMGTIKRMGLVKTGSEDRPVEEVKIVKA 153          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIL1_CRYNE (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Cryptococcus neoformans GN=CYP1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.648e-21
Identity = 55/111 (49.55%), Postives = 69/111 (62.16%), Query Frame = -2
Query:  338 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFV-LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYP 667
            +GY Y G  FHRII +FMIQ             SIYG  F DE    L+ VG G+L+MAN+GPNTNGSQFFI    TP+LD +H +FG V  GM  +++LE+V T + D P
Sbjct:   40 RGY-YNGVIFHRIIPNFMIQGGDPTGTGRGGT-SIYGDRFADEIHPELRFVGAGILAMANSGPNTNGSQFFITCAPTPYLDGKHTIFGRVSSGMKTIQRLEAVRTDKDDRP 148          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: CYP9_CAEEL (Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhabditis elegans GN=cyn-9 PE=2 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 1.648e-21
Identity = 55/118 (46.61%), Postives = 67/118 (56.78%), Query Frame = -2
Query:  302 YKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 655
            YK   FHRI+K FMIQ           G SIYG  F+DE F LKH  P +LSMAN GPN+N SQFFI T   P  + +HVVFG V+ G +VV  ++++       P     I N GEL
Sbjct:   57 YKQNEFHRIVKKFMIQGGDITEGDGRGGFSIYGRYFDDEKFKLKHSRPYLLSMANKGPNSNSSQFFITTAAAPHCNGKHVVFGEVVKGQNVVDYIDNLAVDDKSKPLAKVLISNCGEL 174          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIL1_ASPNG (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Aspergillus niger GN=cypC PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.811e-21
Identity = 55/120 (45.83%), Postives = 72/120 (60.00%), Query Frame = -2
Query:  311 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINS 667
            +GY Y    FHRII +FM+Q             SIYG  FEDE +  LKH G G+LSMAN+GPN NGSQFFI     PWLD +H +FG V  GM V++++  V+T+  D P    +I+ +
Sbjct:   36 RGY-YNNVIFHRIIPNFMVQTGDPTGTGRGGS-SIYGEKFEDEINPNLKHTGAGILSMANSGPNNNGSQFFITLAPQPWLDGKHTIFGRVKSGMRVIQRMGLVKTNSEDRPVDGVKILRA 153          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIB_TREPA (Probable peptidyl-prolyl cis-trans isomerase OS=Treponema pallidum GN=ppiB PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.811e-21
Identity = 54/104 (51.92%), Postives = 66/104 (63.46%), Query Frame = -2
Query:  347 YKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESF-VLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRT 655
            Y+G +FHR+IKDFMIQ                G  F DE    L+H  PGVLSMANAGP TNGSQFFI  V TPWLD +H VFG V++GM+VV  + + +T R+
Sbjct:   84 YQGLTFHRVIKDFMIQGGDPQGNGTGGP----GYQFPDECDPALRHDSPGVLSMANAGPGTNGSQFFITHVATPWLDGKHTVFGKVVEGMEVVHAIIAGDTIRS 183          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIL6_HUMAN (Peptidyl-prolyl cis-trans isomerase-like 6 OS=Homo sapiens GN=PPIL6 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.436e-19
Identity = 52/117 (44.44%), Postives = 73/117 (62.39%), Query Frame = -2
Query:  305 YKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGE 655
            YK   FHRI+++  IQ           G SIYG +FEDE+F + H   GVL MAN G ++NGSQF+I    TP+LD + V FG +I+G +V+++LE V T + + P   CRI +SG+
Sbjct:  193 YKNSIFHRIVQNGWIQGGDIVYGKGDNGESIYGPTFEDENFSVPHNKRGVLGMANKGRHSNGSQFYITLQATPYLDRKFVAFGQLIEGTEVLKQLELVPT-QNERPIHMCRITDSGD 308          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIL3_CHICK (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Gallus gallus GN=PPIL3 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.861e-19
Identity = 53/106 (50.00%), Postives = 64/106 (60.38%), Query Frame = -2
Query:  341 YKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDY 655
            Y GC FHR IK FM+Q             SI+G  FEDE S  LKH   GV+SMAN GPNTNGSQFFI   K P LD ++ VFG VIDG++ + +LE +  +   Y
Sbjct:   37 YNGCVFHRNIKGFMVQTGDPLGTGKGGT-SIWGKKFEDEFSEYLKHSVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTY 141          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIL3_RAT (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Rattus norvegicus GN=Ppil3 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.654e-19
Identity = 53/106 (50.00%), Postives = 64/106 (60.38%), Query Frame = -2
Query:  341 YKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDY 655
            Y GC FHR IK FM+Q             SI+G  FEDE S  LKH   GV+SMAN GPNTNGSQFFI   K P LD ++ VFG VIDG++ + +LE +  +   Y
Sbjct:   37 YNGCVFHRNIKGFMVQTGDPTGTGRGGS-SIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTY 141          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIL3_HUMAN (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Homo sapiens GN=PPIL3 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.654e-19
Identity = 53/106 (50.00%), Postives = 64/106 (60.38%), Query Frame = -2
Query:  341 YKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDY 655
            Y GC FHR IK FM+Q             SI+G  FEDE S  LKH   GV+SMAN GPNTNGSQFFI   K P LD ++ VFG VIDG++ + +LE +  +   Y
Sbjct:   37 YNGCIFHRNIKGFMVQTGDPTGTGRGGN-SIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTY 141          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIL6_BOVIN (Peptidyl-prolyl cis-trans isomerase-like 6 OS=Bos taurus GN=PPIL6 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.909e-18
Identity = 50/118 (42.37%), Postives = 69/118 (58.47%), Query Frame = -2
Query:  302 YKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 655
            Y G  FHR++++  +Q           G SIYG +FEDE+F + H   GVL M N G ++NGSQF+I     P+LD ++V FG +I+G DV+  LESV T   + P   C I  SG+L
Sbjct:  189 YTGSIFHRVVRNGWVQGGDIVAGKGDNGESIYGPTFEDENFSVPHNKRGVLGMVNKGRHSNGSQFYITLQAAPYLDKKYVAFGQLIEGTDVLHHLESVPT-ENERPIQNCVITASGQL 305          
The following BLAST results are available for this feature:
BLAST of CB304766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
PPIL1_GIBZE4.336e-2245.83Peptidyl-prolyl cis-trans isomerase-like 1 OS=Gibb... [more]
PPIL1_CRYNE1.648e-2149.55Peptidyl-prolyl cis-trans isomerase-like 1 OS=Cryp... [more]
CYP9_CAEEL1.648e-2146.61Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhab... [more]
PPIL1_ASPNG2.811e-2145.83Peptidyl-prolyl cis-trans isomerase-like 1 OS=Aspe... [more]
PPIB_TREPA2.811e-2151.92Probable peptidyl-prolyl cis-trans isomerase OS=Tr... [more]
PPIL6_HUMAN3.436e-1944.44Peptidyl-prolyl cis-trans isomerase-like 6 OS=Homo... [more]
PPIL3_CHICK5.861e-1950.00Peptidyl-prolyl cis-trans isomerase-like 3 OS=Gall... [more]
PPIL3_RAT7.654e-1950.00Peptidyl-prolyl cis-trans isomerase-like 3 OS=Ratt... [more]
PPIL3_HUMAN7.654e-1950.00Peptidyl-prolyl cis-trans isomerase-like 3 OS=Homo... [more]
PPIL6_BOVIN2.909e-1842.37Peptidyl-prolyl cis-trans isomerase-like 6 OS=Bos ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_F04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_F04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304766 ID=CB304766; Name=CB304766; organism=Citrus sinensis; type=EST; length=668bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAAATTAGCGCTCTGTTG
TATTATTGACTGTTTACTACAAGTGGAATCTGCACATATACATTCAACCG
AACAATAGTACACATTCAGCTCTACCATGAGCTTACCGAGTATTATTCTT
GAGTTTCTCAGCTAATTCAACTAAGCGGAACATGCTTTCATGTAGATAAC
AGTTACAAAAACCATTTGGCTCCACAAAAGTGATGAATTACAAAAGTCGT
ATTTTATGGTTGTGGTAAGATATCAGAGCTGGCAGATCAGGCATCTAATG
GTAGTTCTCCACTATTGATAATTCTACATGGCACCTTTGGGTAATCTGTC
CTGCTTGTCTCTACAGATTCAAGTTTCCTCACGACGTCCATTCCATCAAT
GACATGTCCAAACACAACATGGCGGTTGTCCAACCATGGTGTCTTCACTG
TGCAAATGAAAAATTGGCTCCCATTGGTATTAGGACCTGCATTGGCCATG
CTTAATACTCCAGGTCCAACATGCTTCAAGACAAAGCTCTCATCTTCAAA
GCTGGAACCATAAATACTGATGCCTCCAGTTCCATCTCCCTCAGTGAAGT
CCCCTCCCTGGATCATAAAATCTTTAATAATACGGTGGAAGGAGCATCCT
TTGTAACCATATCCTTTC
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