CB304766

Overview
NameCB304766
Unique NameCB304766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig355 contig Csv1_Contig355:1..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: CYPH_YEAST (Peptidyl-prolyl cis-trans isomerase OS=Saccharomyces cerevisiae GN=CPR1 PE=1 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 9.638e-30
Identity = 67/122 (54.92%), Postives = 80/122 (65.57%), Query Frame = -2
Query:  302 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 667
            KG+GY G  FHR+I DFM+Q           G SIYG  F DE+F   H  PG+LSMANAGPNTNGSQFFI TV  PWLD +HVVFG V+DG D+V+K+ES+  S +   K    +  SGEL
Sbjct:   42 KGFGYAGSPFHRVIPDFMLQGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVDGYDIVKKVESL-GSPSGATKARIVVAKSGEL 162          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIH_EMENI (Peptidyl-prolyl cis-trans isomerase H OS=Emericella nidulans GN=cyp3 PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.259e-29
Identity = 66/120 (55.00%), Postives = 81/120 (67.50%), Query Frame = -2
Query:  302 GYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGS-SFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 658
            GYKG  FHR+IKDFMIQ             +IYG+  F DE+F L+H  PG+LSMAN+GPNTNG QFFI T  TP+L+ +HVVFG VIDGMD+VR +E+  T+R D P     II  GE+
Sbjct:   65 GYKGSKFHRVIKDFMIQGGDFVNGDGTGSCTIYGTPKFSDENFTLRHDRPGLLSMANSGPNTNGCQFFITTTATPFLNGKHVVFGQVIDGMDIVRMIENTRTTR-DKPNQDVVIIQCGEM 183          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIH_NEUCR (Peptidyl-prolyl cis-trans isomerase H OS=Neurospora crassa GN=cyp-3 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.644e-29
Identity = 68/122 (55.74%), Postives = 82/122 (67.21%), Query Frame = -2
Query:  302 GYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGS-SFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETS--RTDYPKVPCRIINSGEL 658
            GYKG  FHRII +FM Q              IYG+ SF DE+F+LKH  PG+LSMANAGPNTNGSQFFI TV TP+LD +HVVFG V+DGMDVV+K+E+ +T     D P +   I   GE+
Sbjct:   61 GYKGSKFHRIIPNFMCQGGDFLNGDGTGSTCIYGTKSFADENFLLKHDTPGLLSMANAGPNTNGSQFFITTVPTPFLDGKHVVFGKVVDGMDVVKKMENTKTGYRGKDVPNLDVVIAQCGEM 182          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIH_GIBZE (Peptidyl-prolyl cis-trans isomerase H OS=Gibberella zeae GN=CYP3 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.662e-29
Identity = 68/122 (55.74%), Postives = 81/122 (66.39%), Query Frame = -2
Query:  302 GYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYG-SSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETS--RTDYPKVPCRIINSGEL 658
            GYKG  FHRII +FM Q              I+G  SFEDE+F LKH  PG+LSMANAGPNTNGSQFFI TV TP+LDN+HVVFG V +GMDVV+K+E+ +T     D P +   I   GE+
Sbjct:   61 GYKGSKFHRIIPNFMCQGGDFLNGDGTGSTCIWGFKSFEDENFTLKHDQPGLLSMANAGPNTNGSQFFITTVPTPFLDNKHVVFGKVFEGMDVVKKMEATKTGYRGKDMPNLDVVISQCGEM 182          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIA_HEMPU (Peptidyl-prolyl cis-trans isomerase OS=Hemicentrotus pulcherrimus PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.662e-29
Identity = 60/101 (59.41%), Postives = 71/101 (70.30%), Query Frame = -2
Query:  365 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLES 667
            KG+GYKG +FHR+I  FM Q           G SIYG  F DE+F LKH  PG+LSMANAG NTNGSQFFICT  T WLD +HVVFG V  G+D+++K+ES
Sbjct:   44 KGFGYKGSTFHRVIPGFMCQGGDFTRHNGTGGKSIYGEKFADENFTLKHTQPGILSMANAGVNTNGSQFFICTAVTSWLDGKHVVFGAVTQGLDIIKKVES 144          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPID_DICDI (Peptidyl-prolyl cis-trans isomerase D, mitochondrial OS=Dictyostelium discoideum GN=cypD PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.247e-29
Identity = 64/118 (54.24%), Postives = 82/118 (69.49%), Query Frame = -2
Query:  302 YKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 655
            YKG SFHR+IK+FM+Q           G SIYG +F DE+F++KH   G LSMANAG NTNGSQFFI T +TP L+  H VFG V++G D+V+K+E+ ET R+D PK  C I + G+L
Sbjct:   58 YKGSSFHRVIKNFMVQGGDFTHGTGIGGESIYGRTFNDENFLVKHK-IGCLSMANAGKNTNGSQFFITTAETPHLNGGHTVFGEVVEGFDIVKKVENAETDRSDRPKAACVIEDCGQL 174          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIA_PARPR (Peptidyl-prolyl cis-trans isomerase OS=Paramecium primaurelia PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.247e-29
Identity = 64/120 (53.33%), Postives = 78/120 (65.00%), Query Frame = -2
Query:  308 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSG 667
            +G+GYKG  FHR+I DFM Q           G SIYG  F DE+F LKH  P +LSMANAGPNTNGSQFFI  V  PWLD +HVVFG V+DG D + +L    +S+   PK   +I++SG
Sbjct:   42 RGFGYKGSVFHRVITDFMAQGGDFTNFNGTGGKSIYGEKFADENFKLKHTKPALLSMANAGPNTNGSQFFITFVPCPWLDGKHVVFGEVVDGFDTL-ELFKKNSSQQGKPKTTIKIVDSG 160          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: CYPD_YEAST (Peptidyl-prolyl cis-trans isomerase D OS=Saccharomyces cerevisiae GN=CPR5 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.392e-28
Identity = 67/125 (53.60%), Postives = 82/125 (65.60%), Query Frame = -2
Query:  293 GYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL---PLD 658
            GY    FHR+I +FMIQ           G SI+G++F+DE+F +KH  PG LSMAN G NTNGSQFFI TV  PWLD +HVVFG V+DGMDVV  +E+V+T   + P     I+ SGEL   PLD
Sbjct:   78 GYLNSIFHRVIPNFMIQGGDFTHRSGIGGKSIFGNTFKDENFDVKHDKPGRLSMANRGKNTNGSQFFITTVPCPWLDGKHVVFGEVLDGMDVVHYIENVKTDSRNMPVKEVIIVESGELETVPLD 202          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPID_RAT (40 kDa peptidyl-prolyl cis-trans isomerase OS=Rattus norvegicus GN=Ppid PE=1 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 1.818e-28
Identity = 69/118 (58.47%), Postives = 77/118 (65.25%), Query Frame = -2
Query:  302 YKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 655
            +KGC FHRIIK FMIQ           G SIYG  FEDE+F  KH   G+LSMANAGPNTNGSQFFI TV TP LD +HVVFG VI G+ V R LE+VE +  + P   C I   GEL
Sbjct:   68 FKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARMLENVEVN-GEKPAKLCVIAECGEL 184          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPID_MOUSE (40 kDa peptidyl-prolyl cis-trans isomerase OS=Mus musculus GN=Ppid PE=1 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 1.818e-28
Identity = 69/118 (58.47%), Postives = 77/118 (65.25%), Query Frame = -2
Query:  302 YKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 655
            +KGC FHRIIK FMIQ           G SIYG  FEDE+F  KH   G+LSMANAGPNTNGSQFFI TV TP LD +HVVFG VI G+ V R LE+VE +  + P   C I   GEL
Sbjct:   68 FKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARTLENVEVN-GEKPAKLCVIAECGEL 184          
The following BLAST results are available for this feature:
BLAST of CB304766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
CYPH_YEAST9.638e-3054.92Peptidyl-prolyl cis-trans isomerase OS=Saccharomyc... [more]
PPIH_EMENI1.259e-2955.00Peptidyl-prolyl cis-trans isomerase H OS=Emericell... [more]
PPIH_NEUCR1.644e-2955.74Peptidyl-prolyl cis-trans isomerase H OS=Neurospor... [more]
PPIH_GIBZE3.662e-2955.74Peptidyl-prolyl cis-trans isomerase H OS=Gibberell... [more]
PPIA_HEMPU3.662e-2959.41Peptidyl-prolyl cis-trans isomerase OS=Hemicentrot... [more]
PPID_DICDI6.247e-2954.24Peptidyl-prolyl cis-trans isomerase D, mitochondri... [more]
PPIA_PARPR6.247e-2953.33Peptidyl-prolyl cis-trans isomerase OS=Paramecium ... [more]
CYPD_YEAST1.392e-2853.60Peptidyl-prolyl cis-trans isomerase D OS=Saccharom... [more]
PPID_RAT1.818e-2858.4740 kDa peptidyl-prolyl cis-trans isomerase OS=Ratt... [more]
PPID_MOUSE1.818e-2858.4740 kDa peptidyl-prolyl cis-trans isomerase OS=Mus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_F04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_F04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304766 ID=CB304766; Name=CB304766; organism=Citrus sinensis; type=EST; length=668bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAAATTAGCGCTCTGTTG
TATTATTGACTGTTTACTACAAGTGGAATCTGCACATATACATTCAACCG
AACAATAGTACACATTCAGCTCTACCATGAGCTTACCGAGTATTATTCTT
GAGTTTCTCAGCTAATTCAACTAAGCGGAACATGCTTTCATGTAGATAAC
AGTTACAAAAACCATTTGGCTCCACAAAAGTGATGAATTACAAAAGTCGT
ATTTTATGGTTGTGGTAAGATATCAGAGCTGGCAGATCAGGCATCTAATG
GTAGTTCTCCACTATTGATAATTCTACATGGCACCTTTGGGTAATCTGTC
CTGCTTGTCTCTACAGATTCAAGTTTCCTCACGACGTCCATTCCATCAAT
GACATGTCCAAACACAACATGGCGGTTGTCCAACCATGGTGTCTTCACTG
TGCAAATGAAAAATTGGCTCCCATTGGTATTAGGACCTGCATTGGCCATG
CTTAATACTCCAGGTCCAACATGCTTCAAGACAAAGCTCTCATCTTCAAA
GCTGGAACCATAAATACTGATGCCTCCAGTTCCATCTCCCTCAGTGAAGT
CCCCTCCCTGGATCATAAAATCTTTAATAATACGGTGGAAGGAGCATCCT
TTGTAACCATATCCTTTC
back to top