CB304781

Overview
NameCB304781
Unique NameCB304781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304781_ssr157 microsatellite CB304781_ssr157:157..168. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:83..633. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.570e-26
Identity = 61/112 (54.46%), Postives = 78/112 (69.64%), Query Frame = -2
Query:  221 LVCALL-LCILVTAPVTN-AITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 550
            L C +L +C++V AP+   AI+CG VT+ L+P + +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A G+   +  N AA LP +CGV IPYKIS ST+C+ V+
Sbjct:    7 LACVVLVMCMVVIAPMAEGAISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.357e-26
Identity = 60/112 (53.57%), Postives = 78/112 (69.64%), Query Frame = -2
Query:  221 LVCALL-LCILVTAPVTN-AITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 550
            L C +L +C++V AP+   AI+CG VT+ L+P + +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A G+   +  N AA LP +CGV IPYKIS +T+C+ V+
Sbjct:    7 LACVVLVICMVVIAPMAEGAISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 117          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP4_ORYSJ (Non-specific lipid-transfer protein 4 OS=Oryza sativa subsp. japonica GN=Os12g0114500 PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 4.384e-26
Identity = 54/109 (49.54%), Postives = 72/109 (66.06%), Query Frame = -2
Query:  224 LVCALLLCILVTAPVTNAITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 550
            +   +++ +L+ AP  +A+TCGQV + LAP I +       P   CC GVR+LN AA TT DRQ  C CLK+      G++P++ AG+PS+CGV IPY ISPSTDCSRV
Sbjct:   10 VAAVMVVALLLAAPAASAVTCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP1_LENCU (Non-specific lipid-transfer protein 1 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.384e-26
Identity = 56/108 (51.85%), Postives = 78/108 (72.22%), Query Frame = -2
Query:  221 ALLLCILVTAPVTNA-ITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 541
            AL+  ++++AP+  A I+CG V+ +L P + +L+ GG  P P CC GV+ LNGAARTT DR+AACNCLK + G+  G+KP   A LP +CGVR+PY IS ST+C+ +R
Sbjct:   11 ALMCMVVISAPMAEAAISCGTVSGALVPCLTYLK-GGPGPSPQCCGGVKRLNGAARTTIDRRAACNCLKSSAGSISGLKPGNVATLPGKCGVRLPYTISTSTNCNTIR 117          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.478e-26
Identity = 58/109 (53.21%), Postives = 71/109 (65.14%), Query Frame = -2
Query:  224 LVCALLLCILVTAPVTNAITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 550
            +V A    +L       A+TCGQV++++ P + + R  G  P   CCSGVRSLN AARTT DR+AACNCLK A    RG+    AA +PS+CGV IPY IS STDCSRV
Sbjct:   13 VVAAAAAVVLAATTSEAAVTCGQVSSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.767e-26
Identity = 59/103 (57.28%), Postives = 69/103 (66.99%), Query Frame = -2
Query:  224 LCILVTAPVTNAITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 532
            L +L  A    AI+CGQV +++AP I + R  G  P   CCSGVRSLN AARTT DR+AACNCLK A     G+    AA +PS+CGV IPY IS STDCSRV
Sbjct:   17 LVLLAAATSEAAISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.767e-26
Identity = 59/112 (52.68%), Postives = 76/112 (67.86%), Query Frame = -2
Query:  221 LVC-ALLLCILVTAPVTNA-ITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 550
            L C AL++C++V AP+  A ++CG VT  LAP IP+L TGG  P   CC+GV+ L  AA TT DRQAACNCLK A G    + P  AA LP +C V IPYKIS +T+C+ ++
Sbjct:    7 LACVALVMCMVVIAPMAEAAVSCGTVTGDLAPCIPYL-TGGAGPTDSCCAGVKKLLAAAPTTADRQAACNCLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCNTIK 117          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.666e-25
Identity = 57/111 (51.35%), Postives = 74/111 (66.67%), Query Frame = -2
Query:  221 LVCALLLCILVTAPVTN-AITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 550
            L C +L+  ++ AP+   AI+CG VT  L+P + +L TGG  P P CC GV+ L  AA TTPDRQAACNC+K A  +   +  N AA LP +CGV IPYKIS ST+C+ V+
Sbjct:    7 LACVVLVMCMIVAPMAEGAISCGAVTGDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.666e-25
Identity = 54/105 (51.43%), Postives = 75/105 (71.43%), Query Frame = -2
Query:  221 LLCILVTAPVTNAITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 535
            +L + + A V  AITCG V +SL+P + +L  GG   PPPCC+GV+ LNG A+TTPDRQ AC CL+ A    +G+ P++A+GLP +CGV IPY IS ST+C+ ++
Sbjct:   12 VLTVFIVASVDAAITCGTVASSLSPCLGYLSKGG-VVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSA---AKGVNPSLASGLPGKCGVSIPYPISTSTNCATIK 112          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.666e-25
Identity = 52/92 (56.52%), Postives = 71/92 (77.17%), Query Frame = -2
Query:  221 ITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 496
            ITCGQV+++LAP I +++ GG  PP  CC+G+R++N  ARTT DR+AACNCLK+  G+  G+ PN AA LP +CGV +PYKIS ST+C+ V+
Sbjct:    1 ITCGQVSSNLAPCINYVKGGGAVPPA-CCNGIRNVNNLARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          
The following BLAST results are available for this feature:
BLAST of CB304781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP6_LENCU2.570e-2654.46Non-specific lipid-transfer protein 6 OS=Lens culi... [more]
NLTP2_LENCU3.357e-2653.57Non-specific lipid-transfer protein 2 OS=Lens culi... [more]
NLTP4_ORYSJ4.384e-2649.54Non-specific lipid-transfer protein 4 OS=Oryza sat... [more]
NLTP1_LENCU4.384e-2651.85Non-specific lipid-transfer protein 1 OS=Lens culi... [more]
NLTP2_SORBI7.478e-2653.21Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
NLTP_MAIZE9.767e-2657.28Non-specific lipid-transfer protein OS=Zea mays PE... [more]
NLTP3_LENCU9.767e-2652.68Non-specific lipid-transfer protein 3 OS=Lens culi... [more]
NLTP5_LENCU1.666e-2551.35Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTP4_ARATH1.666e-2551.43Non-specific lipid-transfer protein 4 OS=Arabidops... [more]
NLTP1_PRUDO1.666e-2556.52Non-specific lipid-transfer protein 1 OS=Prunus do... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_G10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_G10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304781 ID=CB304781; Name=CB304781; organism=Citrus sinensis; type=EST; length=551bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACTCAAAACACAGATCGCG
TTTACATATTTAATATGACATAAAAAGCAAATATACAAACATGACATGAG
AGTGAAACTCATACAAGTGGAGACTCGTTCGGACAAAGAAATTAACATAG
ATATTCTTTATTTATTTATTCTTCTCAGTCAATCATACTTGGAAAGTCAC
AGAGCTCAAACTCAACTTCACCTGACCCTAGAGCAGTCGGTGCTGGGGCT
GATCTTGTAAGGAATTCTGACTCCACATTGACTAGGAAGGCCAGCGGCAA
CATTAGGTTTGATGCCGCGGTTTGTTCCGTAAGCTCGTTTCAAGCAGTTG
CATGCAGCTTGGCGGTCAGGGGTGGTTCTGGCGGCGCCGTTGAGAGACCT
GACGCCGCTACAGCATGGCGGTGGAGGAAAACGCCCTCCAGTTCTCAAGA
AAGGGATGCGTGGAGCCAAGGAGGCTGTCACCTGCCCGCATGTTATGGCA
TTAGTCACCGGGGCAGTCACCAGAATGCACAAAAGCAAAGCACAAACAAG
C
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