CB304781

Overview
NameCB304781
Unique NameCB304781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304781_ssr157 microsatellite CB304781_ssr157:157..168. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:83..633. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.999e-24
Identity = 54/109 (49.54%), Postives = 69/109 (63.30%), Query Frame = -2
Query:  221 VCALLLCILVTAPVTNAITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 547
            VC LLL   +     +AITCGQV + L   + + R GG  PP  CC+GVR+LN  A+TTPDRQ ACNCLK     + G+   + AG+P +CGV IPY I   TDC++VR
Sbjct:    7 VCFLLLLAFLIG-TASAITCGQVDSDLTSCLGYARKGGVIPPG-CCAGVRTLNNLAKTTPDRQTACNCLKSLVNPSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNKVR 113          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLT43_HORVU (Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare GN=LTP4.3 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.194e-23
Identity = 52/110 (47.27%), Postives = 72/110 (65.45%), Query Frame = -2
Query:  221 LVCALLLCILVTAPVTNAITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 550
            LV   ++  ++      AI+CGQV+++L+P I + R  G  PP  CCSGV+ L GAA++T D+QAAC C+K A G   G+    AAG+PS CGV +PY IS S DCS++R
Sbjct:    9 LVLVAMVAAMLLVATDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSAAG---GLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLT42_HORVU (Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare GN=LTP4.2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.194e-23
Identity = 52/110 (47.27%), Postives = 72/110 (65.45%), Query Frame = -2
Query:  221 LVCALLLCILVTAPVTNAITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 550
            LV   ++  ++      AI+CGQV+++L+P I + R  G  PP  CCSGV+ L GAA++T D+QAAC C+K A G   G+    AAG+PS CGV +PY IS S DCS++R
Sbjct:    9 LVLVAMVAAMLIVATDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSAAG---GLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.660e-23
Identity = 56/110 (50.91%), Postives = 72/110 (65.45%), Query Frame = -2
Query:  224 LVCALLLCILVTAP-VTNAITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 550
            ++ AL+  +L+ AP    AITCGQV +++ P + + R GG  P   CCSGVRSL  AA TT DR+ ACNCLK A    +G+    AA +PS+CGV +PY IS S DCSRV
Sbjct:    7 VLVALVAALLLAAPHAAVAITCGQVNSAVGPCLTYAR-GGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.660e-23
Identity = 56/110 (50.91%), Postives = 72/110 (65.45%), Query Frame = -2
Query:  224 LVCALLLCILVTAP-VTNAITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 550
            ++ AL+  +L+ AP    AITCGQV +++ P + + R GG  P   CCSGVRSL  AA TT DR+ ACNCLK A    +G+    AA +PS+CGV +PY IS S DCSRV
Sbjct:    7 VLVALVAALLLAAPHAAVAITCGQVNSAVGPCLTYAR-GGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.925e-23
Identity = 57/112 (50.89%), Postives = 69/112 (61.61%), Query Frame = -2
Query:  221 LVCALLLCILVTAPVTN-AITCGQVTASLAPRIPFLRTGGRFPPPP-CCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 550
            L C ++LC+LV AP+   AI+  QV +SL P + ++R     P PP  C G+RSL  AAR   DRQAAC C+K        I   VAAGLP QC V IPYKISPS DC RV+
Sbjct:    9 LACVVVLCLLVDAPLAQGAISYDQVKSSLLPCVGYVRGNNARPAPPNYCKGIRSLKSAARIRLDRQAACKCIKSLAADISDINYGVAAGLPGQCNVHIPYKISPSIDCKRVK 120          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTPD_BRAOT (Non-specific lipid-transfer protein D OS=Brassica oleracea var. italica GN=WAX9D PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.738e-23
Identity = 54/112 (48.21%), Postives = 68/112 (60.71%), Query Frame = -2
Query:  221 LVCALLLCILVTAPVTN--AITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 550
            L C +  C++V  P+T+  A++CG V+  +AP I +L       P  CCSGV SLN  ARTTPDRQ AC CL  A      I    AAGLP  CGV IPYKIS +T+C+ V+
Sbjct:    7 LACLIFACMIVAGPITSNAALSCGTVSGYVAPCIGYLAQNAPAVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 118          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP2_BRANA (Non-specific lipid-transfer protein 2 OS=Brassica napus GN=LTP2 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.011e-22
Identity = 55/112 (49.11%), Postives = 71/112 (63.39%), Query Frame = -2
Query:  221 LVCALLLCILVTAPVTN--AITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 550
            L C +L C++V  P+T+  A++CG V+  +AP I +L   G  P   CC+GV +LN  ARTTPDRQ AC CL  A  +   +    AAGLP  CGV IPYKIS ST+C+ VR
Sbjct:    7 LACLVLACMIVAGPITSNAALSCGTVSGYVAPCIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP1_PHAAU (Non-specific lipid-transfer protein 1 OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.724e-22
Identity = 50/91 (54.95%), Postives = 65/91 (71.43%), Query Frame = -2
Query:  224 ITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 496
            +TCGQV  +LA  I FL+ GG   PP CC+GV+++  ++RTT DR+A C+CLK A G  RGI PN A  LP +CGV IPYKIS ST+C+ +
Sbjct:    1 MTCGQVQGNLAQCIGFLQKGG-VVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSI 90          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTPA_BRAOT (Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.941e-22
Identity = 53/116 (45.69%), Postives = 74/116 (63.79%), Query Frame = -2
Query:  221 LVCALLLCILVTAPVT--NAITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNV----AAGLPSQCGVRIPYKISPSTDCSRVR 550
            L C +L C++V  P+T   A+TCG V +++AP I ++  GG  P   CC+GV  LN  ARTTPDRQ AC CL+ A    R + PN+    AAG+P  CGV +P+ IS +T+C+ V+
Sbjct:    7 LACLVLACMIVAGPITANRALTCGTVNSNVAPCIGYITQGGTLPGA-CCTGVSKLNSMARTTPDRQQACRCLETAA---RALGPNLNAGRAAGIPKACGVSVPFPISTNTNCNNVK 118          
The following BLAST results are available for this feature:
BLAST of CB304781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
SCA_LILLO6.999e-2449.54Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]
NLT43_HORVU1.194e-2347.27Non-specific lipid-transfer protein 4.3 OS=Hordeum... [more]
NLT42_HORVU1.194e-2347.27Non-specific lipid-transfer protein 4.2 OS=Hordeum... [more]
NLTP1_ORYSJ2.660e-2350.91Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP1_ORYSI2.660e-2350.91Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP6_GOSHI5.925e-2350.89Non-specific lipid-transfer protein 6 OS=Gossypium... [more]
NLTPD_BRAOT7.738e-2348.21Non-specific lipid-transfer protein D OS=Brassica ... [more]
NLTP2_BRANA1.011e-2249.11Non-specific lipid-transfer protein 2 OS=Brassica ... [more]
NLTP1_PHAAU1.724e-2254.95Non-specific lipid-transfer protein 1 OS=Phaseolus... [more]
NLTPA_BRAOT2.941e-2245.69Non-specific lipid-transfer protein A OS=Brassica ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_G10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_G10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304781 ID=CB304781; Name=CB304781; organism=Citrus sinensis; type=EST; length=551bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACTCAAAACACAGATCGCG
TTTACATATTTAATATGACATAAAAAGCAAATATACAAACATGACATGAG
AGTGAAACTCATACAAGTGGAGACTCGTTCGGACAAAGAAATTAACATAG
ATATTCTTTATTTATTTATTCTTCTCAGTCAATCATACTTGGAAAGTCAC
AGAGCTCAAACTCAACTTCACCTGACCCTAGAGCAGTCGGTGCTGGGGCT
GATCTTGTAAGGAATTCTGACTCCACATTGACTAGGAAGGCCAGCGGCAA
CATTAGGTTTGATGCCGCGGTTTGTTCCGTAAGCTCGTTTCAAGCAGTTG
CATGCAGCTTGGCGGTCAGGGGTGGTTCTGGCGGCGCCGTTGAGAGACCT
GACGCCGCTACAGCATGGCGGTGGAGGAAAACGCCCTCCAGTTCTCAAGA
AAGGGATGCGTGGAGCCAAGGAGGCTGTCACCTGCCCGCATGTTATGGCA
TTAGTCACCGGGGCAGTCACCAGAATGCACAAAAGCAAAGCACAAACAAG
C
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