CB304784

Overview
NameCB304784
Unique NameCB304784
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304784 vs. ExPASy Swiss-Prot
Match: GSHR_BURCE (Glutathione reductase OS=Burkholderia cepacia GN=gor PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.429e-27
Identity = 59/114 (51.75%), Postives = 80/114 (70.18%), Query Frame = -3
Query:  258 DYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLPMCGEDAPEIVQGFAVAVKAGLTKADFDAPVGVHPTAAEEFVPLR 599
            ++  VP AVFSQP    VGLSE QA   Y +++++ + FRP++A LSG  ++  +KLV+    ++V+G  + G DA EI+QG AVA+KA  TKADFDA +GVHPT AEEFV LR
Sbjct:  333 EHENVPFAVFSQPQAASVGLSEAQARDRYSNVEIYGSAFRPMRAALSGRDEKALVKLVVNGSNDRVVGAHIVGADAAEIIQGIAVAIKARATKADFDATLGVHPTLAEEFVTLR 446          
BLAST of CB304784 vs. ExPASy Swiss-Prot
Match: GSHR_ANASP (Glutathione reductase OS=Anabaena sp. (strain PCC 7120) GN=gor PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 6.017e-25
Identity = 57/115 (49.57%), Postives = 79/115 (68.70%), Query Frame = -3
Query:  258 YSAVPSAVFSQPPIGQVGLSEEQAIQEYGD--IDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLPMCGEDAPEIVQGFAVAVKAGLTKADFDAPVGVHPTAAEEFVPLR 596
            +  + +AVFS P    VGL+E +A  + GD  + ++   FRP+  + +G  +RI MKLV+  KT+KVLG  M GE+A EI+QG A+AVK G TK DFDA VG+HP++AEEFV +R
Sbjct:  345 HETIATAVFSNPQASTVGLTEAEARAKLGDDAVTIYRTRFRPMYHSFTGKQERIMMKLVVDTKTDKVLGAHMVGENAAEIIQGVAIAVKMGATKKDFDATVGIHPSSAEEFVTMR 459          
BLAST of CB304784 vs. ExPASy Swiss-Prot
Match: GSHR_CALJA (Glutathione reductase, mitochondrial OS=Callithrix jacchus GN=GSR PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.026e-24
Identity = 55/119 (46.22%), Postives = 82/119 (68.91%), Query Frame = -3
Query:  258 TKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYG--DIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLPMCGEDAPEIVQGFAVAVKAGLTKADFDAPVGVHPTAAEEFVPLR 608
            +K DY+ +P+ VFS PPIG VGL+E++AI +YG  ++ +++ +F P+   ++    +  MK+V   +  KV+G+ M G    E++QGFAVAVK G TKADFD  V +HPT++EE VPLR
Sbjct:  404 SKLDYNNIPTVVFSHPPIGTVGLTEDEAIHKYGKENVKIYSTSFTPMYHAVTKRKTKCVMKMVCAYEEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEELVPLR 522          
BLAST of CB304784 vs. ExPASy Swiss-Prot
Match: GSHR_HUMAN (Glutathione reductase, mitochondrial OS=Homo sapiens GN=GSR PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 6.653e-24
Identity = 55/119 (46.22%), Postives = 80/119 (67.23%), Query Frame = -3
Query:  258 TKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYG--DIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLPMCGEDAPEIVQGFAVAVKAGLTKADFDAPVGVHPTAAEEFVPLR 608
            +K DY+ +P+ VFS PPIG VGL+E++AI +YG  ++  ++ +F P+   ++    +  MK+V   K  KV+G+ M G    E++QGFAVAVK G TKADFD  V +HPT++EE V LR
Sbjct:  404 SKLDYNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEELVTLR 522          
BLAST of CB304784 vs. ExPASy Swiss-Prot
Match: GSHR_MOUSE (Glutathione reductase, mitochondrial OS=Mus musculus GN=Gsr PE=2 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.135e-23
Identity = 54/119 (45.38%), Postives = 79/119 (66.39%), Query Frame = -3
Query:  258 TKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYG--DIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLPMCGEDAPEIVQGFAVAVKAGLTKADFDAPVGVHPTAAEEFVPLR 608
            +K DY  +P+ VFS PPIG VGL+E++A+ +YG  ++ +++  F P+   ++    +  MK+V   K  KV+G+ M G    E++QGFAVAVK G TKADFD  V +HPT++EE V LR
Sbjct:  382 SKLDYDNIPTVVFSHPPIGTVGLTEDEAVHKYGKDNVKIYSTAFTPMYHAVTTRKTKCVMKMVCANKEEKVVGIHMQGIGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEELVTLR 500          
BLAST of CB304784 vs. ExPASy Swiss-Prot
Match: GSHR_HAEIN (Glutathione reductase OS=Haemophilus influenzae GN=gor PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.135e-23
Identity = 57/116 (49.14%), Postives = 76/116 (65.52%), Query Frame = -3
Query:  258 DYSAVPSAVFSQPPIGQVGLSEEQAIQEYG--DIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLPMCGEDAPEIVQGFAVAVKAGLTKADFDAPVGVHPTAAEEFVPLR 599
            DYS VP+ VFS PPIG VGL+E QAI++YG  ++ V+ ++F  +   ++       MKLV   K  KV+GL   G    E++QGFAVA+K G TKADFD  V +HPT +EEFV +R
Sbjct:  341 DYSLVPTVVFSHPPIGTVGLTEPQAIEQYGAENVKVYKSSFTAMYTAVTQHRQPCKMKLVCVGKDEKVVGLHGIGFGVDEMIQGFAVAIKMGATKADFDNTVAIHPTGSEEFVTMR 456          
BLAST of CB304784 vs. ExPASy Swiss-Prot
Match: GSHR_RAT (Glutathione reductase (Fragment) OS=Rattus norvegicus GN=Gsr PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.302e-23
Identity = 53/116 (45.69%), Postives = 77/116 (66.38%), Query Frame = -3
Query:  258 DYSAVPSAVFSQPPIGQVGLSEEQAIQEYG--DIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLPMCGEDAPEIVQGFAVAVKAGLTKADFDAPVGVHPTAAEEFVPLR 599
            DY  +P+ VFS PPIG VGL+E++A+ +YG  ++ +++  F P+   ++    +  MK+V   K  KV+G+ M G    E++QGFAVAVK G TKADFD  V +HPT++EE V LR
Sbjct:  309 DYDNIPTVVFSHPPIGTVGLTEDEAVHKYGKDNVKIYSTAFTPMYHAVTTRKTKCVMKMVCANKEEKVVGIHMQGIGCDEMLQGFAVAVKMGATKADFDNRVAIHPTSSEELVTLR 424          
BLAST of CB304784 vs. ExPASy Swiss-Prot
Match: GSHR_STRTR (Glutathione reductase OS=Streptococcus thermophilus GN=gor PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.227e-22
Identity = 54/118 (45.76%), Postives = 75/118 (63.56%), Query Frame = -3
Query:  258 KPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYG--DIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLPMCGEDAPEIVQGFAVAVKAGLTKADFDAPVGVHPTAAEEFVPLR 605
            K DY+ V + VFS P IG +GL+EE+AI +YG  +I V+ ++F P+   L        MKLV   +  K++GL   G    E++QGF+VA+K G TKADFD  V +HPT +EEFV +R
Sbjct:  333 KLDYTDVATVVFSHPAIGAIGLTEEKAIAKYGAENIKVYKSSFTPMYTALGDNRQLSTMKLVTLGEDEKIIGLHGIGYGVDEMIQGFSVAIKMGATKADFDNTVAIHPTGSEEFVTMR 450          
BLAST of CB304784 vs. ExPASy Swiss-Prot
Match: GSHR_ECOLI (Glutathione reductase OS=Escherichia coli (strain K12) GN=gor PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.227e-22
Identity = 54/116 (46.55%), Postives = 74/116 (63.79%), Query Frame = -3
Query:  258 DYSAVPSAVFSQPPIGQVGLSEEQAIQEYGD--IDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLPMCGEDAPEIVQGFAVAVKAGLTKADFDAPVGVHPTAAEEFVPLR 599
            DYS +P+ VFS PPIG VGL+E QA ++YGD  + V+ ++F  +   ++       MKLV      K++G+   G    E++QGFAVA+K G TK DFD  V +HPTAAEEFV +R
Sbjct:  335 DYSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEFVTMR 450          
BLAST of CB304784 vs. ExPASy Swiss-Prot
Match: GSHR_YARLI (Glutathione reductase OS=Yarrowia lipolytica GN=GLR1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.062e-21
Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = -3
Query:  258 KPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGD--IDVFTANFRPLKATLSGLPDRIFMKLVLCAKTNKVLGLPMCGEDAPEIVQGFAVAVKAGLTKADFDAPVGVHPTAAEEFVPLR 605
            K DY+ VPSAVFS P +G +G++E  A ++YG+  + V+T+ F  +   +         KLV   K  KV+GL + G D+ EI+QGF VA++ G TKADFD  V +HPT+AEE V +R
Sbjct:  353 KQDYTDVPSAVFSHPEVGSIGITEAAAKEQYGEENVKVYTSKFVAMYYAMLEEKAPTAYKLVCAGKDEKVVGLHIVGADSAEILQGFGVAIRMGATKADFDNVVAIHPTSAEELVTMR 470          
The following BLAST results are available for this feature:
BLAST of CB304784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
GSHR_BURCE6.429e-2751.75Glutathione reductase OS=Burkholderia cepacia GN=g... [more]
GSHR_ANASP6.017e-2549.57Glutathione reductase OS=Anabaena sp. (strain PCC ... [more]
GSHR_CALJA1.026e-2446.22Glutathione reductase, mitochondrial OS=Callithrix... [more]
GSHR_HUMAN6.653e-2446.22Glutathione reductase, mitochondrial OS=Homo sapie... [more]
GSHR_MOUSE1.135e-2345.38Glutathione reductase, mitochondrial OS=Mus muscul... [more]
GSHR_HAEIN1.135e-2349.14Glutathione reductase OS=Haemophilus influenzae GN... [more]
GSHR_RAT3.302e-2345.69Glutathione reductase (Fragment) OS=Rattus norvegi... [more]
GSHR_STRTR6.227e-2245.76Glutathione reductase OS=Streptococcus thermophilu... [more]
GSHR_ECOLI6.227e-2246.55Glutathione reductase OS=Escherichia coli (strain ... [more]
GSHR_YARLI1.062e-2144.92Glutathione reductase OS=Yarrowia lipolytica GN=GL... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_H01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_H01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304784 ID=CB304784; Name=CB304784; organism=Citrus sinensis; type=EST; length=610bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGTCCACCTTGAAGGGTAT
ATAACAGAGAAATAACAGTAAATCTAAATGAACATATCCTTAATCCTACT
CAGCAAGAAATACTGACACCTACTCGCCTTGAAATTGCCTTCTAAAACAT
GCAGCAAATTGATTGCTTCTACTCTACTAAACTCCTGCTGCAGCCTTAAC
CTCAGGACCAGTCATTCCCTCAGACGGAGGGCTCTTTCTGATCTTCCGAG
TAGGCGTCCTCAATGGGACAAACTCCTCTGCTGCCGTTGGATGAACACCC
ACTGGGGCATCAAAGTCTGCCTTAGTCAGACCAGCTTTGACAGCAACAGC
AAATCCCTGCACAATTTCAGGGGCATCTTCTCCACACATGGGCAAACCCA
GAACTTTGTTCGTCTTTGCACATAATACAAGTTTCATGAAGATCCTGTCT
GGAAGCCCAGAGAGAGTAGCTTTTAGTGGTCTGAAATTTGCTGTGAAGAC
ATCAATGTCACCATATTCTTGTATAGCCTGTTCTTCAGAAAGACCAACTT
GTCCAATTGGTGGCTGAGAAAAGACTGCAGATGGAACAGCGCTGTAATCA
GGTTTTGTTG
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