CB304793 | Citrus Genome Database

Overview


Name	CB304793
Unique Name	CB304793
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	585

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: GRP78_CANGA (78 kDa glucose-regulated protein homolog OS=Candida glabrata GN=KAR2 PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 4.810e-61
Identity = 119/186 (63.98%), Postives = 140/186 (75.27%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQQLL+ FFNGK+  K  NPDE           +LSGE  E V+D++LLDV   +LG+ET GGVMT LI RNT IP KK Q+FST  DNQP V I+VYEGER  ++DNNLLGKFEL+GIPPAPRG+PQI V F +DANGIL VSA DK  G+   ITI NDKGRL++DEI++MV+EAE
Sbjct:  369 GGSTRIPKVQQLLESFFNGKKASKGINPDEAVAYGAAVQAGVLSGE--EGVEDIVLLDVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVQIKVYEGERAMSKDNNLLGKFELTGIPPAPRGIPQIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQDEIDRMVEEAE 552

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: GRP78_APLCA (78 kDa glucose-regulated protein OS=Aplysia californica PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.399e-60
Identity = 116/186 (62.37%), Postives = 141/186 (75.81%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQQL++++FNGKE  +  NPDE           +LSGE  E   DL+LLDV P ++G+ET GGVMT LIPRNT IP KK Q+FST  DNQP V IQVYEGER+ T+DN+LLGKF+L+GIPPAPRGVPQI V F+ID NGIL V+AEDK  G KN+I I ND+ RLS ++IE+M+ +AE
Sbjct:  372 GGSTRIPKVQQLVKEYFNGKEPSRGINPDEAVAYGAAVQAGVLSGE--EDTGDLVLLDVNPLTMGIETVGGVMTKLIPRNTVIPTKKSQIFSTAADNQPTVTIQVYEGERSMTKDNHLLGKFDLTGIPPAPRGVPQIEVTFEIDVNGILKVTAEDKGTGSKNQIVIQNDQNRLSPEDIERMINDAE 555

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: GRP78_YEAST (78 kDa glucose-regulated protein homolog OS=Saccharomyces cerevisiae GN=KAR2 PE=1 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 3.118e-60
Identity = 117/186 (62.90%), Postives = 141/186 (75.81%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQQLL+ +F+GK+  K  NPDE           +LSGE  E V+D++LLDV   +LG+ET GGVMT LI RNT IP KK Q+FST  DNQP V+I+VYEGER  ++DNNLLGKFEL+GIPPAPRGVPQI V F +DANGIL VSA DK  G+   ITI NDKGRL+++EI++MV+EAE
Sbjct:  383 GGSTRIPKVQQLLESYFDGKKASKGINPDEAVAYGAAVQAGVLSGE--EGVEDIVLLDVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNNLLGKFELTGIPPAPRGVPQIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEEIDRMVEEAE 566

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: GRP78_RAT (78 kDa glucose-regulated protein OS=Rattus norvegicus GN=Hspa5 PE=1 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 6.945e-60
Identity = 115/186 (61.83%), Postives = 140/186 (75.27%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPK+QQL+++FFNGKE  +  NPDE           +LSG+  +   DL+LLDV P +LG+ET GGVMT LIPRNT +P KK Q+FST  DNQP V I+VYEGER  T+DN+LLG F+L+GIPPAPRGVPQI V F+ID NGIL V+AEDK  G KNKITI ND+ RL+ +EIE+MV +AE
Sbjct:  363 GGSTRIPKIQQLVKEFFNGKEPSRGINPDEAVAYGAAVQAGVLSGD--QDTGDLVLLDVCPLTLGIETVGGVMTKLIPRNTVVPTKKSQIFSTASDNQPTVTIKVYEGERPLTKDNHLLGTFDLTGIPPAPRGVPQIEVTFEIDVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVNDAE 546

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: GRP78_PIG (78 kDa glucose-regulated protein (Fragment) OS=Sus scrofa GN=HSPA5 PE=2 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 6.945e-60
Identity = 115/186 (61.83%), Postives = 140/186 (75.27%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPK+QQL+++FFNGKE  +  NPDE           +LSG+  +   DL+LLDV P +LG+ET GGVMT LIPRNT +P KK Q+FST  DNQP V I+VYEGER  T+DN+LLG F+L+GIPPAPRGVPQI V F+ID NGIL V+AEDK  G KNKITI ND+ RL+ +EIE+MV +AE
Sbjct:    7 GGSTRIPKIQQLVKEFFNGKEPSRGINPDEAVAYGAAVQAGVLSGD--QDTGDLVLLDVCPLTLGIETVGGVMTKLIPRNTVVPTKKSQIFSTASDNQPTVTIKVYEGERPLTKDNHLLGTFDLTGIPPAPRGVPQIEVTFEIDVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVNDAE 190

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: GRP78_MOUSE (78 kDa glucose-regulated protein OS=Mus musculus GN=Hspa5 PE=1 SV=3)

HSP 1 Score: 229.95 bits (585), Expect = 6.945e-60
Identity = 115/186 (61.83%), Postives = 140/186 (75.27%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPK+QQL+++FFNGKE  +  NPDE           +LSG+  +   DL+LLDV P +LG+ET GGVMT LIPRNT +P KK Q+FST  DNQP V I+VYEGER  T+DN+LLG F+L+GIPPAPRGVPQI V F+ID NGIL V+AEDK  G KNKITI ND+ RL+ +EIE+MV +AE
Sbjct:  364 GGSTRIPKIQQLVKEFFNGKEPSRGINPDEAVAYGAAVQAGVLSGD--QDTGDLVLLDVCPLTLGIETVGGVMTKLIPRNTVVPTKKSQIFSTASDNQPTVTIKVYEGERPLTKDNHLLGTFDLTGIPPAPRGVPQIEVTFEIDVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVNDAE 547

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: GRP78_MESAU (78 kDa glucose-regulated protein OS=Mesocricetus auratus GN=HSPA5 PE=1 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 6.945e-60
Identity = 115/186 (61.83%), Postives = 140/186 (75.27%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPK+QQL+++FFNGKE  +  NPDE           +LSG+  +   DL+LLDV P +LG+ET GGVMT LIPRNT +P KK Q+FST  DNQP V I+VYEGER  T+DN+LLG F+L+GIPPAPRGVPQI V F+ID NGIL V+AEDK  G KNKITI ND+ RL+ +EIE+MV +AE
Sbjct:  363 GGSTRIPKIQQLVKEFFNGKEPSRGINPDEAVAYGAAVQAGVLSGD--QDTGDLVLLDVCPLTLGIETVGGVMTKLIPRNTVVPTKKSQIFSTASDNQPTVTIKVYEGERPLTKDNHLLGTFDLTGIPPAPRGVPQIEVTFEIDVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVNDAE 546

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: GRP78_HUMAN (78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 6.945e-60
Identity = 115/186 (61.83%), Postives = 140/186 (75.27%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPK+QQL+++FFNGKE  +  NPDE           +LSG+  +   DL+LLDV P +LG+ET GGVMT LIPRNT +P KK Q+FST  DNQP V I+VYEGER  T+DN+LLG F+L+GIPPAPRGVPQI V F+ID NGIL V+AEDK  G KNKITI ND+ RL+ +EIE+MV +AE
Sbjct:  363 GGSTRIPKIQQLVKEFFNGKEPSRGINPDEAVAYGAAVQAGVLSGD--QDTGDLVLLDVCPLTLGIETVGGVMTKLIPRNTVVPTKKSQIFSTASDNQPTVTIKVYEGERPLTKDNHLLGTFDLTGIPPAPRGVPQIEVTFEIDVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVNDAE 546

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: GRP78_CHICK (78 kDa glucose-regulated protein OS=Gallus gallus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 6.945e-60
Identity = 115/186 (61.83%), Postives = 140/186 (75.27%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPK+QQL+++FFNGKE  +  NPDE           +LSG+  +   DL+LLDV P +LG+ET GGVMT LIPRNT +P KK Q+FST  DNQP V I+VYEGER  T+DN+LLG F+L+GIPPAPRGVPQI V F+ID NGIL V+AEDK  G KNKITI ND+ RL+ +EIE+MV +AE
Sbjct:  361 GGSTRIPKIQQLVKEFFNGKEPSRGINPDEAVAYGAAVQAGVLSGD--QDTGDLVLLDVCPLTLGIETVGGVMTKLIPRNTVVPTKKSQIFSTASDNQPTVTIKVYEGERPLTKDNHLLGTFDLTGIPPAPRGVPQIEVTFEIDVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVNDAE 544

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: GRP78_BOVIN (78 kDa glucose-regulated protein OS=Bos taurus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 6.945e-60
Identity = 115/186 (61.83%), Postives = 140/186 (75.27%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPK+QQL+++FFNGKE  +  NPDE           +LSG+  +   DL+LLDV P +LG+ET GGVMT LIPRNT +P KK Q+FST  DNQP V I+VYEGER  T+DN+LLG F+L+GIPPAPRGVPQI V F+ID NGIL V+AEDK  G KNKITI ND+ RL+ +EIE+MV +AE
Sbjct:  364 GGSTRIPKIQQLVKEFFNGKEPSRGINPDEAVAYGAAVQAGVLSGD--QDTGDLVLLDVCPLTLGIETVGGVMTKLIPRNTVVPTKKSQIFSTASDNQPTVTIKVYEGERPLTKDNHLLGTFDLTGIPPAPRGVPQIEVTFEIDVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVNDAE 547

The following BLAST results are available for this feature:

BLAST of CB304793 vs. ExPASy Swiss-Prot

BLAST of CB304793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
GRP78_CANGA	4.810e-61	63.98	78 kDa glucose-regulated protein homolog OS=Candid...	[more]
GRP78_APLCA	1.399e-60	62.37	78 kDa glucose-regulated protein OS=Aplysia califo...	[more]
GRP78_YEAST	3.118e-60	62.90	78 kDa glucose-regulated protein homolog OS=Saccha...	[more]
GRP78_RAT	6.945e-60	61.83	78 kDa glucose-regulated protein OS=Rattus norvegi...	[more]
GRP78_PIG	6.945e-60	61.83	78 kDa glucose-regulated protein (Fragment) OS=Sus...	[more]
GRP78_MOUSE	6.945e-60	61.83	78 kDa glucose-regulated protein OS=Mus musculus G...	[more]
GRP78_MESAU	6.945e-60	61.83	78 kDa glucose-regulated protein OS=Mesocricetus a...	[more]
GRP78_HUMAN	6.945e-60	61.83	78 kDa glucose-regulated protein OS=Homo sapiens G...	[more]
GRP78_CHICK	6.945e-60	61.83	78 kDa glucose-regulated protein OS=Gallus gallus ...	[more]
GRP78_BOVIN	6.945e-60	61.83	78 kDa glucose-regulated protein OS=Bos taurus GN=...	[more]

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Properties


Property Name	Value
Genbank description	FLAVEDO0002_IVaR_A03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_A03 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB304793 ID=CB304793; Name=CB304793; organism=Citrus sinensis; type=EST; length=585bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGCCTCTTGAACCATCTTCT
CAATTTCATCCTTTGAAAGTCTTCCTTTGTCATTAGCGATGGTGATCTTG
TTCTTTTGACCAGGGGTCTTGTCCTCGGCAGACACATTCAGGATACCATT
GGCATCGATGTCGAAGCACACAGTGATTTGAGGAACACCCCTAGGAGCTG
GGGGAATACCAGAGAGCTCGAATTTACCCAACAAGTTATTGTCCCTGGTT
CTTGTCCTTTCACCTTCATAAACTTGGATCAACACACCAGGTTGGTTGTC
AAAGTAAGTTGAAAAAACCTGCTCCTTCTTGGGGGGAATGGTCGTGTTCC
TTGGAATCAACACAGTCATGACACCACCAGCAGTCTCCAAACCAAGGGAG
AAAGGCGTGACATCCAATAGCAAAAGATCCTGCACCTTCTCATTACCCTC
ACCACTCAAGATAGCAGCTTGCACAGCAGCACCATAGGCAACAGCCTCAT
CGGGGTTGGTGCTCTTGCAAAGCTCCTTCCCATTAAAGAAATCTTGCAAA
AGCTGCTGGACTTTGGGAATCCTAGTAAATCCTCC