CB304793

Overview
NameCB304793
Unique NameCB304793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP7D_CAEEL (Heat shock 70 kDa protein D OS=Caenorhabditis elegans GN=hsp-4 PE=1 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 1.957e-54
Identity = 107/186 (57.53%), Postives = 132/186 (70.97%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQQL++D+FNGKE  +  NPDE           ++ G   E   D++LLDV P +LG+ET GGVMT LI RNT IP KK QVFST  D+Q  V I +YEGER    DN+ LG F+++GIPPAPRGVPQI V F+ID NGIL+VSAEDK  G KNK+TI ND  RLS ++IE+M+ +A+
Sbjct:  365 GGSTRIPKVQQLIKDYFNGKEPSRGINPDEAVAYGAAVQAGVIGGV--ENTGDVVLLDVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNHKLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPEDIERMINDAD 548          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: GRP78_PLAFA (78 kDa glucose-regulated protein homolog (Fragment) OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 4.360e-54
Identity = 107/172 (62.21%), Postives = 128/172 (74.42%), Query Frame = -1
Query:   28 DFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 543
            +FFNGKE  +  NPDE           I+ GE   ++QD++LLDVTP +LG+ET GG+MT LI RNT IP KK Q FSTY DNQP VLIQV+EGER  T+DN+LLGKFELSGIPPA RGVP+I V F +D NGIL+V AEDK  G+   ITI NDKGRLSK++IEKM+ +AE
Sbjct:    1 EFFNGKEPNRGINPDEAVAYGAAIQAGIILGE---ELQDVVLLDVTPLTLGIETVGGIMTQLIKRNTVIPTKKSQTFSTYQDNQPAVLIQVFEGERALTKDNHLLGKFELSGIPPAQRGVPKIEVTFTVDKNGILHVEAEDKGTGKSRGITITNDKGRLSKEQIEKMINDAE 169          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_NAUPA (Chaperone protein dnaK OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=dnaK PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 9.714e-54
Identity = 111/186 (59.68%), Postives = 134/186 (72.04%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ+L+ ++FNGK+L KS NPDE           +L G+    V+D+LLLDVTP SLG+ET GGVMT +I + TTIP KK QVFST  DNQ  V I V +GE    +DN  LG+F L GIPPAPRGVPQI V FDIDANG+LNVSA+DKT G++ KITI      LS++EIE+MV+EAE
Sbjct:  335 GGSTRIPKVQELVSNYFNGKKLNKSVNPDEVVALGAAIQAGVLKGD----VKDVLLLDVTPLSLGIETLGGVMTKIIEKGTTIPVKKSQVFSTAEDNQTAVTIHVLQGEAELAKDNKSLGQFNLEGIPPAPRGVPQIEVTFDIDANGVLNVSAKDKTSGKEQKITITG-SSTLSEEEIERMVREAE 515          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_WOLSU (Chaperone protein dnaK OS=Wolinella succinogenes GN=dnaK PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 8.223e-53
Identity = 116/186 (62.37%), Postives = 130/186 (69.89%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQQ ++DF  GKEL KS NPDE           +L G+    V+D+LLLDVTP SLG+ET GGVMT +I R TTIP KK QVFST  DNQP V IQV +GER   RDN  LG FELSGIP APRGVPQI V FDIDANGIL VSA+DK  G+  +I I    G LS  EIEKMV++AE
Sbjct:  335 GGSTRIPKVQQRVKDFI-GKELNKSVNPDEVVALGAAIQGGVLKGD----VKDVLLLDVTPLSLGIETLGGVMTKIIDRGTTIPVKKSQVFSTAEDNQPAVTIQVLQGERELARDNKSLGMFELSGIPAAPRGVPQIEVTFDIDANGILTVSAKDKATGKSQEIKITGSSG-LSDSEIEKMVKDAE 514          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_CUPTR (Chaperone protein dnaK OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=dnaK PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.187e-51
Identity = 108/186 (58.06%), Postives = 135/186 (72.58%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+PKVQ+ +++FF GKE  K  NPDE          ++LSG+     +D+LLLDVTP SLG+ET GGVMT +I +NTTIP K  QVFST  DNQP V I+VY+GER     N LLG+F L GIPPAPRG PQI V FDIDANGIL+V A+DK  G++N+ITI  + G LS+DEI++MV++AE
Sbjct:  342 GGMTRMPKVQEQVKEFF-GKEARKDVNPDEAVAVGAAIQGSVLSGDR----KDVLLLDVTPLSLGIETLGGVMTKMITKNTTIPTKHAQVFSTADDNQPAVTIKVYQGEREMATGNKLLGEFNLEGIPPAPRGTPQIEVSFDIDANGILHVGAKDKATGKENRITIKANSG-LSEDEIQRMVKDAE 521          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_ANAMM (Chaperone protein dnaK OS=Anaplasma marginale (strain St. Maries) GN=dnaK PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.025e-51
Identity = 108/186 (58.06%), Postives = 130/186 (69.89%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+PKV Q ++DFF GKE CK  NPDE           IL+G+    V+D+LLLDV P SLG+ET GGV T LI RNTTIP KK QVFST  D Q  V I+VY+GER    DN LLG+F L GIP APRG+PQI V FDIDANGI++VSA+DK  G++  I I    G LS++EI+KMVQ+A+
Sbjct:  339 GGMTRMPKVIQRVKDFFGGKEPCKGVNPDEVVAIGAAIQGGILTGD----VRDVLLLDVAPLSLGIETLGGVFTPLIERNTTIPTKKSQVFSTAEDGQTAVTIKVYQGERKMAVDNKLLGQFSLEGIPSAPRGIPQIEVTFDIDANGIVHVSAKDKASGKEQTIKI-QSSGGLSEEEIKKMVQDAQ 519          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_RALEJ (Chaperone protein dnaK OS=Ralstonia eutropha (strain JMP134) GN=dnaK PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 2.645e-51
Identity = 107/186 (57.53%), Postives = 135/186 (72.58%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+PKVQ+ +++FF GKE  K  NPDE          ++LSG+     +D+LLLDVTP SLG+ET GGVMT +I +NTTIP K  QVFST  DNQP V I+VY+GER     N LLG+F L GIPP+PRG PQI V FDIDANGIL+V A+DK  G++N+ITI  + G LS+DEI++MV++AE
Sbjct:  342 GGMTRMPKVQEQVKEFF-GKEARKDVNPDEAVAVGAAIQGSVLSGDR----KDVLLLDVTPLSLGIETLGGVMTKMITKNTTIPTKHAQVFSTADDNQPAVTIKVYQGEREMATGNKLLGEFNLEGIPPSPRGTPQIEVSFDIDANGILHVGAKDKATGKENRITIKANSG-LSEDEIQRMVKDAE 521          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_ARCB4 (Chaperone protein dnaK OS=Arcobacter butzleri (strain RM4018) GN=dnaK PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 2.645e-51
Identity = 112/186 (60.22%), Postives = 131/186 (70.43%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+PK  Q++++FF GK+L K  NPDE           +L G+    V+D+LLLDVTP SLG+ET GGVMT LI + TTIP KK QVFST  DNQP V I V +GER   +DN  LG FELS IP APRGVPQI V FDIDANG+LNVSA+DK  G++NKITI+   G LS  EIEKMV EAE
Sbjct:  335 GGSTRLPKANQVVKEFF-GKDLNKGVNPDEVVAAGAAVQAGVLRGD----VKDVLLLDVTPLSLGIETLGGVMTKLIDKGTTIPVKKSQVFSTADDNQPAVSIHVCQGEREFAKDNKSLGMFELSDIPAAPRGVPQIEVTFDIDANGVLNVSAKDKGTGKENKITISGSSG-LSDAEIEKMVAEAE 514          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_NITSB (Chaperone protein dnaK OS=Nitratiruptor sp. (strain SB155-2) GN=dnaK PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 4.512e-51
Identity = 108/186 (58.06%), Postives = 133/186 (71.51%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIP VQQ +++FF GKE  KS NPDE          A++ G+    V+D+LLLDVTP SLG+ET GGVMT +I + TTIP KK Q+FST  DNQP V I V +GER   +DN  LG+F L GIPPAPRGVPQI V FDIDANGIL VSA+DK  G++ KIT+    G LS++EI++M+Q+AE
Sbjct:  335 GGSTRIPLVQQKVKEFF-GKEPNKSVNPDEVVAVGAAIQGAVIKGD----VKDVLLLDVTPLSLGIETLGGVMTKIIEKGTTIPVKKSQIFSTAEDNQPAVTIHVLQGEREMAKDNKSLGQFTLEGIPPAPRGVPQIEVTFDIDANGILTVSAKDKATGKEQKITVTGTSG-LSEEEIQRMIQDAE 514          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_HELAH (Chaperone protein dnaK OS=Helicobacter acinonychis (strain Sheeba) GN=dnaK PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 4.512e-51
Identity = 112/186 (60.22%), Postives = 129/186 (69.35%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ+ ++ F N KEL KS NPDE           +L G+    V+D+LLLDVTP SLG+ET GGVMT +I R TTIP KK QVFST  DNQP V I V +GER   RDN  LGKF+L GI PAPRGVPQI V FDIDANGIL VSA+DK  G+  +I I+   G LS  EIEKMV++AE
Sbjct:  335 GGSTRIPKVQERVKGFIN-KELNKSVNPDEVVAVGASIQGGVLKGD----VKDVLLLDVTPLSLGIETLGGVMTKVIDRGTTIPAKKSQVFSTAEDNQPAVSIMVLQGERDLARDNKSLGKFDLQGIAPAPRGVPQIEVTFDIDANGILTVSAQDKNTGKSQEIKISGSSG-LSDSEIEKMVKDAE 514          
The following BLAST results are available for this feature:
BLAST of CB304793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP7D_CAEEL1.957e-5457.53Heat shock 70 kDa protein D OS=Caenorhabditis eleg... [more]
GRP78_PLAFA4.360e-5462.2178 kDa glucose-regulated protein homolog (Fragment... [more]
DNAK_NAUPA9.714e-5459.68Chaperone protein dnaK OS=Nautilia profundicola (s... [more]
DNAK_WOLSU8.223e-5362.37Chaperone protein dnaK OS=Wolinella succinogenes G... [more]
DNAK_CUPTR1.187e-5158.06Chaperone protein dnaK OS=Cupriavidus taiwanensis ... [more]
DNAK_ANAMM2.025e-5158.06Chaperone protein dnaK OS=Anaplasma marginale (str... [more]
DNAK_RALEJ2.645e-5157.53Chaperone protein dnaK OS=Ralstonia eutropha (stra... [more]
DNAK_ARCB42.645e-5160.22Chaperone protein dnaK OS=Arcobacter butzleri (str... [more]
DNAK_NITSB4.512e-5158.06Chaperone protein dnaK OS=Nitratiruptor sp. (strai... [more]
DNAK_HELAH4.512e-5160.22Chaperone protein dnaK OS=Helicobacter acinonychis... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_A03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_A03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304793 ID=CB304793; Name=CB304793; organism=Citrus sinensis; type=EST; length=585bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGCCTCTTGAACCATCTTCT
CAATTTCATCCTTTGAAAGTCTTCCTTTGTCATTAGCGATGGTGATCTTG
TTCTTTTGACCAGGGGTCTTGTCCTCGGCAGACACATTCAGGATACCATT
GGCATCGATGTCGAAGCACACAGTGATTTGAGGAACACCCCTAGGAGCTG
GGGGAATACCAGAGAGCTCGAATTTACCCAACAAGTTATTGTCCCTGGTT
CTTGTCCTTTCACCTTCATAAACTTGGATCAACACACCAGGTTGGTTGTC
AAAGTAAGTTGAAAAAACCTGCTCCTTCTTGGGGGGAATGGTCGTGTTCC
TTGGAATCAACACAGTCATGACACCACCAGCAGTCTCCAAACCAAGGGAG
AAAGGCGTGACATCCAATAGCAAAAGATCCTGCACCTTCTCATTACCCTC
ACCACTCAAGATAGCAGCTTGCACAGCAGCACCATAGGCAACAGCCTCAT
CGGGGTTGGTGCTCTTGCAAAGCTCCTTCCCATTAAAGAAATCTTGCAAA
AGCTGCTGGACTTTGGGAATCCTAGTAAATCCTCC
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