CB304793

Overview
NameCB304793
Unique NameCB304793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11598 contig Csv1_Contig11598:259..843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP71_CANFA (Heat shock 70 kDa protein 1 OS=Canis familiaris GN=HSPA1 PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 2.459e-73
Identity = 140/186 (75.27%), Postives = 155/186 (83.33%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ+LLQDFFNG++L KS NPDE          AIL G+ +E VQDLLLLDV P SLGLETAGGVMT LI RN+TIP K+ Q+F+TY DNQPGVLIQVYEGER  TRDNNLLG+FELSGIPPAPRGVPQI V FDIDANGILNV+A DK+ G+ NKITI NDKGRLSK+EIE+MVQEAE
Sbjct:  338 GGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSENVQDLLLLDVAPLSLGLETAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFELSGIPPAPRGVPQIEVTFDIDANGILNVTATDKSTGKANKITITNDKGRLSKEEIERMVQEAE 523
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP70_ONCTS (Heat shock 70 kDa protein OS=Oncorhynchus tschawytscha GN=hsp70 PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 2.459e-73
Identity = 139/186 (74.73%), Postives = 156/186 (83.87%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ+LLQDFFNG+EL KS NPDE          AILSG+ +E VQDLLLLDV P SLG+ETAGGVMT LI RNTTIP K+ Q F+TY DNQPGV+IQVYEGER  T+DNNLLGKFELSGIPPAPRGVPQI V FDIDANGILNVSA DK+ G++NKITI NDKGRLSK++IE+MVQ+A+
Sbjct:  340 GGSTRIPKVQKLLQDFFNGRELNKSINPDEAVAYGAAIQAAILSGDKSENVQDLLLLDVAPLSLGIETAGGVMTALIKRNTTIPSKQTQTFTTYSDNQPGVMIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQDAD 525
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HS71B_PIG (Heat shock 70 kDa protein 1B OS=Sus scrofa GN=HSPA1B PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 2.459e-73
Identity = 140/186 (75.27%), Postives = 155/186 (83.33%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ+LLQDFFNG++L KS NPDE          AIL G+ +E VQDLLLLDV P SLGLETAGGVMT LI RN+TIP K+ Q+F+TY DNQPGVLIQVYEGER  TRDNNLLG+FELSGIPPAPRGVPQI V FDIDANGILNV+A DK+ G+ NKITI NDKGRLSK+EIE+MVQEAE
Sbjct:  338 GGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSENVQDLLLLDVAPLSLGLETAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFELSGIPPAPRGVPQIEVTFDIDANGILNVTATDKSTGKANKITITNDKGRLSKEEIERMVQEAE 523
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HS71B_BOVIN (Heat shock 70 kDa protein 1B OS=Bos taurus GN=HSPA1B PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 2.459e-73
Identity = 140/186 (75.27%), Postives = 155/186 (83.33%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ+LLQDFFNG++L KS NPDE          AIL G+ +E VQDLLLLDV P SLGLETAGGVMT LI RN+TIP K+ Q+F+TY DNQPGVLIQVYEGER  TRDNNLLG+FELSGIPPAPRGVPQI V FDIDANGILNV+A DK+ G+ NKITI NDKGRLSK+EIE+MVQEAE
Sbjct:  338 GGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSENVQDLLLLDVAPLSLGLETAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFELSGIPPAPRGVPQIEVTFDIDANGILNVTATDKSTGKANKITITNDKGRLSKEEIERMVQEAE 523
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HS71B_BOSMU (Heat shock 70 kDa protein 1B OS=Bos mutus grunniens GN=HSPA1B PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 2.459e-73
Identity = 140/186 (75.27%), Postives = 155/186 (83.33%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ+LLQDFFNG++L KS NPDE          AIL G+ +E VQDLLLLDV P SLGLETAGGVMT LI RN+TIP K+ Q+F+TY DNQPGVLIQVYEGER  TRDNNLLG+FELSGIPPAPRGVPQI V FDIDANGILNV+A DK+ G+ NKITI NDKGRLSK+EIE+MVQEAE
Sbjct:  338 GGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSENVQDLLLLDVAPLSLGLETAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFELSGIPPAPRGVPQIEVTFDIDANGILNVTATDKSTGKANKITITNDKGRLSKEEIERMVQEAE 523
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HS71A_PIG (Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA1A PE=3 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 2.459e-73
Identity = 140/186 (75.27%), Postives = 155/186 (83.33%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ+LLQDFFNG++L KS NPDE          AIL G+ +E VQDLLLLDV P SLGLETAGGVMT LI RN+TIP K+ Q+F+TY DNQPGVLIQVYEGER  TRDNNLLG+FELSGIPPAPRGVPQI V FDIDANGILNV+A DK+ G+ NKITI NDKGRLSK+EIE+MVQEAE
Sbjct:  338 GGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSENVQDLLLLDVAPLSLGLETAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFELSGIPPAPRGVPQIEVTFDIDANGILNVTATDKSTGKANKITITNDKGRLSKEEIERMVQEAE 523
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HS71A_BOVIN (Heat shock 70 kDa protein 1A OS=Bos taurus GN=HSPA1A PE=2 SV=2)

HSP 1 Score: 274.633 bits (701), Expect = 2.459e-73
Identity = 140/186 (75.27%), Postives = 155/186 (83.33%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ+LLQDFFNG++L KS NPDE          AIL G+ +E VQDLLLLDV P SLGLETAGGVMT LI RN+TIP K+ Q+F+TY DNQPGVLIQVYEGER  TRDNNLLG+FELSGIPPAPRGVPQI V FDIDANGILNV+A DK+ G+ NKITI NDKGRLSK+EIE+MVQEAE
Sbjct:  338 GGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSENVQDLLLLDVAPLSLGLETAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFELSGIPPAPRGVPQIEVTFDIDANGILNVTATDKSTGKANKITITNDKGRLSKEEIERMVQEAE 523
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HS71L_RAT (Heat shock 70 kDa protein 1-like OS=Rattus norvegicus GN=Hspa1l PE=2 SV=2)

HSP 1 Score: 274.248 bits (700), Expect = 3.211e-73
Identity = 139/186 (74.73%), Postives = 157/186 (84.41%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ+LLQD+FNG++L KS NPDE          AIL G+ +EKVQDLLLLDV P SLGLETAGGVMTVLI RN+TIP K+ Q+F+TY DNQPGVLIQVYEGER  TRDNNLLG+F+L+GIPPAPRGVPQI V FDIDANGILNV+A DK+ G+ NKITI NDKGRLSK+EIE+MVQEAE
Sbjct:  340 GGSTRIPKVQKLLQDYFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSEKVQDLLLLDVAPLSLGLETAGGVMTVLIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFDLTGIPPAPRGVPQIEVTFDIDANGILNVTAMDKSTGKANKITITNDKGRLSKEEIERMVQEAE 525
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HS71L_MOUSE (Heat shock 70 kDa protein 1-like OS=Mus musculus GN=Hspa1l PE=2 SV=4)

HSP 1 Score: 274.248 bits (700), Expect = 3.211e-73
Identity = 139/186 (74.73%), Postives = 157/186 (84.41%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ+LLQD+FNG++L KS NPDE          AIL G+ +EKVQDLLLLDV P SLGLETAGGVMTVLI RN+TIP K+ Q+F+TY DNQPGVLIQVYEGER  TRDNNLLG+F+L+GIPPAPRGVPQI V FDIDANGILNV+A DK+ G+ NKITI NDKGRLSK+EIE+MVQEAE
Sbjct:  340 GGSTRIPKVQKLLQDYFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSEKVQDLLLLDVAPLSLGLETAGGVMTVLIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFDLTGIPPAPRGVPQIEVTFDIDANGILNVTAMDKSTGKANKITITNDKGRLSKEEIERMVQEAE 525
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP71_RAT (Heat shock 70 kDa protein 1A/1B OS=Rattus norvegicus GN=Hspa1a PE=2 SV=2)

HSP 1 Score: 273.478 bits (698), Expect = 5.478e-73
Identity = 140/186 (75.27%), Postives = 154/186 (82.80%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ+LLQDFFNG++L KS NPDE          AIL G+ +E VQDLLLLDV P SLGLETAGGVMT LI RN+TIP K+ Q F+TY DNQPGVLIQVYEGER  TRDNNLLG+FELSGIPPAPRGVPQI V FDIDANGILNV+A DK+ G+ NKITI NDKGRLSK+EIE+MVQEAE
Sbjct:  338 GGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSENVQDLLLLDVAPLSLGLETAGGVMTALIKRNSTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFELSGIPPAPRGVPQIEVTFDIDANGILNVTATDKSTGKANKITITNDKGRLSKEEIERMVQEAE 523
The following BLAST results are available for this feature:
BLAST of CB304793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP71_CANFA2.459e-7375.27Heat shock 70 kDa protein 1 OS=Canis familiaris GN... [more]
HSP70_ONCTS2.459e-7374.73Heat shock 70 kDa protein OS=Oncorhynchus tschawyt... [more]
HS71B_PIG2.459e-7375.27Heat shock 70 kDa protein 1B OS=Sus scrofa GN=HSPA... [more]
HS71B_BOVIN2.459e-7375.27Heat shock 70 kDa protein 1B OS=Bos taurus GN=HSPA... [more]
HS71B_BOSMU2.459e-7375.27Heat shock 70 kDa protein 1B OS=Bos mutus grunnien... [more]
HS71A_PIG2.459e-7375.27Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA... [more]
HS71A_BOVIN2.459e-7375.27Heat shock 70 kDa protein 1A OS=Bos taurus GN=HSPA... [more]
HS71L_RAT3.211e-7374.73Heat shock 70 kDa protein 1-like OS=Rattus norvegi... [more]
HS71L_MOUSE3.211e-7374.73Heat shock 70 kDa protein 1-like OS=Mus musculus G... [more]
HSP71_RAT5.478e-7375.27Heat shock 70 kDa protein 1A/1B OS=Rattus norvegic... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_A03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_A03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304793 ID=CB304793; Name=CB304793; organism=Citrus sinensis; type=EST; length=585bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGCCTCTTGAACCATCTTCT
CAATTTCATCCTTTGAAAGTCTTCCTTTGTCATTAGCGATGGTGATCTTG
TTCTTTTGACCAGGGGTCTTGTCCTCGGCAGACACATTCAGGATACCATT
GGCATCGATGTCGAAGCACACAGTGATTTGAGGAACACCCCTAGGAGCTG
GGGGAATACCAGAGAGCTCGAATTTACCCAACAAGTTATTGTCCCTGGTT
CTTGTCCTTTCACCTTCATAAACTTGGATCAACACACCAGGTTGGTTGTC
AAAGTAAGTTGAAAAAACCTGCTCCTTCTTGGGGGGAATGGTCGTGTTCC
TTGGAATCAACACAGTCATGACACCACCAGCAGTCTCCAAACCAAGGGAG
AAAGGCGTGACATCCAATAGCAAAAGATCCTGCACCTTCTCATTACCCTC
ACCACTCAAGATAGCAGCTTGCACAGCAGCACCATAGGCAACAGCCTCAT
CGGGGTTGGTGCTCTTGCAAAGCTCCTTCCCATTAAAGAAATCTTGCAAA
AGCTGCTGGACTTTGGGAATCCTAGTAAATCCTCC
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