CB304793 | Citrus Genome Database

Overview


Name	CB304793
Unique Name	CB304793
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	585

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig11598	contig	Csv1_Contig11598:259..843.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_ERYRH (Chaperone protein dnaK OS=Erysipelothrix rhusiopathiae GN=dnaK PE=2 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 6.099e-48
Identity = 107/186 (57.53%), Postives = 127/186 (68.28%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIP V + +++   GKE  KS NPDE           ++SG+G    +D+LLLDVTP SLG+ET GGVMTVLI RNTTIP  K QVFST  DNQP V I V +GER   +DN  LG F+L GI PA RG+PQI V FDID NGI+NVSA DK   +K  ITI+N  G LS +EIE+MV+EAE
Sbjct:  311 GGSTRIPAVVEAVKNDL-GKEPNKSVNPDEVVAMGAAIQGGVISGDG----KDVLLLDVTPLSLGIETMGGVMTVLIERNTTIPTSKSQVFSTAADNQPAVDINVLQGERPMAKDNKSLGLFKLDGIAPAKRGIPQIEVTFDIDVNGIVNVSAMDKGTNKKQSITISNSSG-LSDEEIERMVREAE 490

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_ENTS8 (Chaperone protein dnaK OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=dnaK PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.099e-48
Identity = 106/186 (56.99%), Postives = 130/186 (69.89%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ + +FF GKE  K  NPDE           +L+G+    V+D+LLLDVTP SLG+ET GGVMT LI +NTTIP K  QVFST  DNQ  V I V +GER R  DN  LG+F L GI PAPRG+PQI V FDIDA+GIL+VSA+DK  G++ KITI    G L+++EI+KMV+EAE
Sbjct:  341 GGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLLDVTPLSLGIETMGGVMTPLITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-LNEEEIQKMVREAE 520

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_CLONN (Chaperone protein dnaK OS=Clostridium novyi (strain NT) GN=dnaK PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.099e-48
Identity = 106/186 (56.99%), Postives = 126/186 (67.74%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIP VQ+ +Q F  GKE  K  NPDE           +L+GE    V+D+LLLDVTP +LG+ET GGV T LI RNTTIP +K Q+FST  DNQ  V I + +GER    DN  LG+F+LSGI PAPRG+PQI V FDIDANGILNVSA+DK  G++  ITI      LS DEI+K V+EAE
Sbjct:  313 GGSTRIPAVQEAVQKF-TGKEPSKGVNPDEVVAMGAAVQAGVLTGE----VKDILLLDVTPLTLGIETMGGVATPLIERNTTIPTRKSQIFSTAADNQTSVDIHIVQGERKMAGDNKTLGRFQLSGIAPAPRGIPQIEVSFDIDANGILNVSAKDKGTGKEANITITAST-NLSDDEIDKAVKEAE 492

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_BRECH (Chaperone protein dnaK OS=Brevibacillus choshinensis GN=dnaK PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.099e-48
Identity = 105/186 (56.45%), Postives = 127/186 (68.28%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIP VQ+ ++ F  GKE  K  NPDE           +L+G+    V+D++LLDVTP SLG+ET GGV T LI RNTTIP  K QVFST  DNQPGV I V +GER    DN  LG+F L+ IPPAPRGVPQI V FDIDANGI+NV A+D   G++ +ITI    G LS +EI++MV+EAE
Sbjct:  311 GGSTRIPAVQEAIKKF-TGKEPHKGVNPDEVVALGAAVQAGVLTGD----VKDVVLLDVTPLSLGIETLGGVFTKLIDRNTTIPTSKSQVFSTAADNQPGVEIHVLQGERQMAADNKTLGRFNLNDIPPAPRGVPQIEVSFDIDANGIVNVRAKDLGTGKEQRITITASSG-LSDEEIDRMVKEAE 490

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_BLOFL (Chaperone protein dnaK OS=Blochmannia floridanus GN=dnaK PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.099e-48
Identity = 107/186 (57.53%), Postives = 129/186 (69.35%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ + +FFN KE  K  NPDE           +LSG+    V+D+LLLDVTP SLG+ET GGVMT LI +NTTIP K  QVFST  DNQ  V I V +GER R  DN  LG+F L GI PA RG+PQI V FDIDA+GIL+VSA+DK  G++ KITI    G L+++EI+KMVQEAE
Sbjct:  342 GGQTRMPLVQKKVSEFFN-KEPRKDVNPDEAVAIGAAVQGGVLSGD----VKDVLLLDVTPLSLGIETMGGVMTSLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRASDNKSLGQFNLDGIAPAMRGIPQIEVTFDIDADGILHVSAKDKNSGREQKITIKASSG-LNEEEIKKMVQEAE 521

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_AMOA5 (Chaperone protein dnaK OS=Amoebophilus asiaticus (strain 5a2) GN=dnaK PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.099e-48
Identity = 105/186 (56.45%), Postives = 126/186 (67.74%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPK+Q+ ++ FFN K+  K  NPDE           +L+GE    V+D+LLLDV P S G+ET GGV T LI  NTTIP KK +VFST  D+Q  V I V +GER   RDN  +GKF L GIPPAPRG+PQI V FDIDANGILNVSA+DK  G++ KI I    G L+ +EI+KM QEAE
Sbjct:  337 GGSTRIPKIQEEVEKFFN-KKPSKGVNPDEVVAVGAAIQGGVLTGE----VKDVLLLDVIPLSFGIETLGGVYTKLIEANTTIPTKKSEVFSTAADSQSSVEIHVLQGERAMARDNRTIGKFHLDGIPPAPRGIPQIEVTFDIDANGILNVSAKDKGTGKEQKIRIEASSG-LTDEEIKKMKQEAE 516

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_ACIC5 (Chaperone protein dnaK OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=dnaK PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.099e-48
Identity = 102/186 (54.84%), Postives = 129/186 (69.35%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P++Q++++  F GKE  +  NPDE           +L+GE    V+DLLLLDVTP +L +ET GGV T +IPRNTTIP KK + FST  D+Q  V + V +GER     N  LGKF+LSGIPPAPRGVPQI V FDIDANGILNV+A+D   G+  KITI +  G LSK+E+E+M +EAE
Sbjct:  335 GGQTRMPRIQEIVKQLF-GKEPHRGVNPDEVVAIGAAVQAGVLAGE----VKDLLLLDVTPLTLSIETLGGVATPMIPRNTTIPTKKTETFSTAGDSQTEVEVHVLQGERPMAGQNRTLGKFKLSGIPPAPRGVPQIEVTFDIDANGILNVTAKDTATGKDQKITITSSSG-LSKEEVERMAKEAE 514

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_XANP2 (Chaperone protein dnaK OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=dnaK PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 7.965e-48
Identity = 103/186 (55.38%), Postives = 129/186 (69.35%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+PKVQ++++ FF GKE  K  NPDE           +L G+    V+D+LLLDVTP SLG+ET GGV T LI RNTTIP KK Q FST  D Q  V I+V++GER    DN +LG+F+L GIPPAPRGVPQ+ V FDIDANGI+ VSA+DK  G++ +I I    G L+  +IEKMV++AE
Sbjct:  336 GGMTRMPKVQEVVKQFF-GKEPHKGVNPDEVVAIGAAVQAGVLQGD----VKDVLLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSQTFSTAEDGQTAVTIRVFQGEREMAADNKMLGQFDLMGIPPAPRGVPQVEVTFDIDANGIVQVSAKDKGTGKEQQIRI-QASGGLNDADIEKMVKDAE 515

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_SILPO (Chaperone protein dnaK OS=Silicibacter pomeroyi GN=dnaK PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 7.965e-48
Identity = 105/186 (56.45%), Postives = 130/186 (69.89%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+PKV + +  FF GKE  K  NPDE           +L G+    V+D++LLDVTP SLG+ET GGV T LI RNTTIP KK QVFST  DNQ  V I+V++GER    DN +LG+F L  IPPAPRG+PQI V FDIDANGI++VSA+DK  G+++KITI    G LS ++IEKMV++AE
Sbjct:  336 GGMTRMPKVFEEVTKFF-GKEPHKGVNPDEVVAMGAAIQAGVLQGD----VKDVVLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSQVFSTAEDNQNAVTIRVFQGEREMAADNKILGQFNLEDIPPAPRGMPQIEVTFDIDANGIVSVSAKDKGTGKEHKITI-QASGGLSDEDIEKMVKDAE 515

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_PELPD (Chaperone protein dnaK OS=Pelobacter propionicus (strain DSM 2379) GN=dnaK PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 7.965e-48
Identity = 103/186 (55.38%), Postives = 129/186 (69.35%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ ++  F GK   +  NPDE           +L G+    V+D+LLLDVTP SLG+ET GGVMT LI +NTTIP +K QVFST  DNQP V I V +GER  +RDN  LG FEL+GIPPAPRG+PQ+ V FDIDANGI++VSA+D   G++  I I    G LSK+EI+KMV++AE
Sbjct:  336 GGMTRMPAVQKKVEAIF-GKTPNRGVNPDEVVAIGAGIQGGVLKGD----VKDVLLLDVTPLSLGIETLGGVMTKLIEKNTTIPCRKSQVFSTAADNQPAVSIHVLQGEREMSRDNKTLGNFELTGIPPAPRGIPQVEVTFDIDANGIVHVSAKDLGTGKEQSIRITASSG-LSKEEIDKMVRDAE 515

The following BLAST results are available for this feature:

BLAST of CB304793 vs. ExPASy Swiss-Prot

BLAST of CB304793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
DNAK_ERYRH	6.099e-48	57.53	Chaperone protein dnaK OS=Erysipelothrix rhusiopat...	[more]
DNAK_ENTS8	6.099e-48	56.99	Chaperone protein dnaK OS=Enterobacter sakazakii (...	[more]
DNAK_CLONN	6.099e-48	56.99	Chaperone protein dnaK OS=Clostridium novyi (strai...	[more]
DNAK_BRECH	6.099e-48	56.45	Chaperone protein dnaK OS=Brevibacillus choshinens...	[more]
DNAK_BLOFL	6.099e-48	57.53	Chaperone protein dnaK OS=Blochmannia floridanus G...	[more]
DNAK_AMOA5	6.099e-48	56.45	Chaperone protein dnaK OS=Amoebophilus asiaticus (...	[more]
DNAK_ACIC5	6.099e-48	54.84	Chaperone protein dnaK OS=Acidobacterium capsulatu...	[more]
DNAK_XANP2	7.965e-48	55.38	Chaperone protein dnaK OS=Xanthobacter autotrophic...	[more]
DNAK_SILPO	7.965e-48	56.45	Chaperone protein dnaK OS=Silicibacter pomeroyi GN...	[more]
DNAK_PELPD	7.965e-48	55.38	Chaperone protein dnaK OS=Pelobacter propionicus (...	[more]

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Properties


Property Name	Value
Genbank description	FLAVEDO0002_IVaR_A03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_A03 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB304793 ID=CB304793; Name=CB304793; organism=Citrus sinensis; type=EST; length=585bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGCCTCTTGAACCATCTTCT
CAATTTCATCCTTTGAAAGTCTTCCTTTGTCATTAGCGATGGTGATCTTG
TTCTTTTGACCAGGGGTCTTGTCCTCGGCAGACACATTCAGGATACCATT
GGCATCGATGTCGAAGCACACAGTGATTTGAGGAACACCCCTAGGAGCTG
GGGGAATACCAGAGAGCTCGAATTTACCCAACAAGTTATTGTCCCTGGTT
CTTGTCCTTTCACCTTCATAAACTTGGATCAACACACCAGGTTGGTTGTC
AAAGTAAGTTGAAAAAACCTGCTCCTTCTTGGGGGGAATGGTCGTGTTCC
TTGGAATCAACACAGTCATGACACCACCAGCAGTCTCCAAACCAAGGGAG
AAAGGCGTGACATCCAATAGCAAAAGATCCTGCACCTTCTCATTACCCTC
ACCACTCAAGATAGCAGCTTGCACAGCAGCACCATAGGCAACAGCCTCAT
CGGGGTTGGTGCTCTTGCAAAGCTCCTTCCCATTAAAGAAATCTTGCAAA
AGCTGCTGGACTTTGGGAATCCTAGTAAATCCTCC