CB304793

Overview
NameCB304793
Unique NameCB304793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_PSEE4 (Chaperone protein dnaK OS=Pseudomonas entomophila (strain L48) GN=dnaK PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.774e-47
Identity = 104/186 (55.91%), Postives = 129/186 (69.35%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ + DFF GKE  K  NPDE          A+L+G+    V+D+LLLDV+P +LG+ET GGVMT LI +NTTIP KK QVFST  DNQ  V I V +GER +   N  LGKF+L+ IPPAPRGVPQI V FDIDANGIL+V A+DK  G+   I I  + G LS +E+E+MV++AE
Sbjct:  341 GGQTRMPMVQKAVADFF-GKEARKDVNPDEAVAMGAAIQGAVLAGD----VKDVLLLDVSPLTLGIETMGGVMTALIEKNTTIPTKKSQVFSTADDNQGAVTIHVLQGERKQASQNKSLGKFDLADIPPAPRGVPQIEVTFDIDANGILHVGAKDKATGKAQSIVIKANSG-LSDEEVERMVRDAE 520
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_POLSQ (Chaperone protein dnaK OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.774e-47
Identity = 102/186 (54.84%), Postives = 133/186 (71.51%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ  +++ F GKE  K  NPDE          ++LSG+     +D+LLLDVTP SLG+ET GGVMT +IP+NTTIP K  QV+ST  DNQP V I+ ++GER     N LLG+F L GI PA RG+PQI V FDIDANGIL+V+A+DKT G++NKITI  + G L+++EI++MV++AE
Sbjct:  342 GGQTRMPAVQDKVKEIF-GKEPRKDVNPDEAVAVGAAIQGSVLSGDR----KDVLLLDVTPLSLGIETLGGVMTKMIPKNTTIPTKHSQVYSTAEDNQPAVTIKCFQGEREMAAANKLLGEFNLEGIAPAQRGMPQIEVTFDIDANGILHVTAKDKTTGKENKITIKANSG-LTEEEIQRMVKDAE 521
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_KINRD (Chaperone protein dnaK OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=dnaK PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.774e-47
Identity = 98/186 (52.69%), Postives = 130/186 (69.89%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P V  ++++   GKE  K  NPDE           +L GE     +D+LL+DVTP SLG+ET GG+MT LI RNT IP K+ +VF+T  DNQP VLIQV++GER   RDN  LG FEL+GI PAPRGVPQ+ V FDIDANGI++V+A+D+  G++  +TI+     LSK++IE+MV++AE
Sbjct:  318 GGSTRMPAVTGVVKELLGGKEPNKGVNPDEVVAIGAALQAGVLKGER----KDVLLIDVTPLSLGIETKGGIMTKLIERNTAIPTKRSEVFTTADDNQPSVLIQVFQGERELARDNKPLGTFELTGIAPAPRGVPQVEVTFDIDANGIVHVNAKDRGTGKEQSMTISGGSA-LSKEDIERMVKDAE 498
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_CHLFF (Chaperone protein dnaK OS=Chlamydophila felis (strain Fe/C-56) GN=dnaK PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.774e-47
Identity = 100/186 (53.76%), Postives = 130/186 (69.89%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG +R+P VQ++++D F GKE  K  NPDE           +L GE    V+D+LLLDV P SLG+ET GGVMT L+ RNTTIP +K+Q+FST  DNQP V I V +GER   +DN  +G+F+L+ IPPAPRG PQI V FDIDANGIL+VSA+D   G++ KI I    G L +DEI++M+++AE
Sbjct:  339 GGMSRMPAVQEIVKDIF-GKEPNKGVNPDEVVAIGAAIQGGVLGGE----VKDVLLLDVIPLSLGIETLGGVMTPLVERNTTIPTQKKQIFSTAADNQPAVTIVVLQGERPMAKDNKEIGRFDLTDIPPAPRGHPQIEVTFDIDANGILHVSAKDAASGREQKIRIEASSG-LKEDEIQRMIRDAE 518
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_CELJU (Chaperone protein dnaK OS=Cellvibrio japonicus (strain Ueda107) GN=dnaK PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.774e-47
Identity = 105/186 (56.45%), Postives = 129/186 (69.35%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ + D+F GKE  K  NPDE          A+L+G+    V+D+LLLDVTP +LG+ET GGV T LI +NTTIP KK QVFST  DNQ  V I V +GER +   N  LG+F+L+ IPPAPRG+PQI V FDIDANGILNVSA+DK  G++  I I    G LS DEI+KMV++AE
Sbjct:  341 GGQTRMPLVQKAVADYF-GKEPRKDVNPDEAVAIGAAIQGAVLAGD----VKDVLLLDVTPLTLGIETMGGVATPLIEKNTTIPTKKSQVFSTADDNQTAVTIHVVQGERKQASQNKSLGRFDLADIPPAPRGMPQIEVTFDIDANGILNVSAKDKATGKEQSIVIKASSG-LSDDEIQKMVKDAE 520
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_CAMJR (Chaperone protein dnaK OS=Campylobacter jejuni (strain RM1221) GN=dnaK PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.774e-47
Identity = 105/186 (56.45%), Postives = 128/186 (68.82%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ ++  FN K+L KS NPDE          A++ G+    V+D+LLLDVTP SLG+ET GGVMT +I + TTIP KKEQVFST  DNQ  V I V +GER  +RDN  LG F L GIPPAPRG+PQI V FDIDANGIL VSA+DK  G+  +I I    G LS++EI  MV++AE
Sbjct:  335 GGSTRVPLVQEEVKKAFN-KDLNKSVNPDEVVAIGAAIQGAVIKGD----VKDVLLLDVTPLSLGIETLGGVMTKIIEKGTTIPTKKEQVFSTAEDNQSAVTINVLQGEREFSRDNKSLGNFNLEGIPPAPRGMPQIEVTFDIDANGILTVSAKDKATGKAQEIKITGSSG-LSEEEINNMVKDAE 514
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_CAMJE (Chaperone protein dnaK OS=Campylobacter jejuni GN=dnaK PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.774e-47
Identity = 105/186 (56.45%), Postives = 128/186 (68.82%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ ++  FN K+L KS NPDE          A++ G+    V+D+LLLDVTP SLG+ET GGVMT +I + TTIP KKEQVFST  DNQ  V I V +GER  +RDN  LG F L GIPPAPRG+PQI V FDIDANGIL VSA+DK  G+  +I I    G LS++EI  MV++AE
Sbjct:  335 GGSTRVPLVQEEVKKAFN-KDLNKSVNPDEVVAIGAAIQGAVIKGD----VKDVLLLDVTPLSLGIETLGGVMTKIIEKGTTIPTKKEQVFSTAEDNQSAVTINVLQGEREFSRDNKSLGNFNLEGIPPAPRGMPQIEVTFDIDANGILTVSAKDKATGKAQEIKITGSSG-LSEEEINNMVKDAE 514
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_CAMJD (Chaperone protein dnaK OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=dnaK PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.774e-47
Identity = 105/186 (56.45%), Postives = 128/186 (68.82%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ ++  FN K+L KS NPDE          A++ G+    V+D+LLLDVTP SLG+ET GGVMT +I + TTIP KKEQVFST  DNQ  V I V +GER  +RDN  LG F L GIPPAPRG+PQI V FDIDANGIL VSA+DK  G+  +I I    G LS++EI  MV++AE
Sbjct:  335 GGSTRVPLVQEEVKKTFN-KDLNKSVNPDEVVAIGAAIQGAVIKGD----VKDVLLLDVTPLSLGIETLGGVMTKIIEKGTTIPTKKEQVFSTAEDNQSAVTINVLQGEREFSRDNKSLGNFNLEGIPPAPRGMPQIEVTFDIDANGILTVSAKDKATGKAQEIKITGSSG-LSEEEINNMVKDAE 514
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_CAMJ8 (Chaperone protein dnaK OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=dnaK PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.774e-47
Identity = 105/186 (56.45%), Postives = 128/186 (68.82%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ ++  FN K+L KS NPDE          A++ G+    V+D+LLLDVTP SLG+ET GGVMT +I + TTIP KKEQVFST  DNQ  V I V +GER  +RDN  LG F L GIPPAPRG+PQI V FDIDANGIL VSA+DK  G+  +I I    G LS++EI  MV++AE
Sbjct:  335 GGSTRVPLVQEEVKKAFN-KDLNKSVNPDEVVAIGAAIQGAVIKGD----VKDVLLLDVTPLSLGIETLGGVMTKIIEKGTTIPTKKEQVFSTAEDNQSAVTINVLQGEREFSRDNKSLGNFNLEGIPPAPRGMPQIEVTFDIDANGILTVSAKDKATGKAQEIKITGSSG-LSEEEINNMVKDAE 514
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_BURCJ (Chaperone protein dnaK OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=dnaK PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.774e-47
Identity = 102/186 (54.84%), Postives = 132/186 (70.97%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+PKV + +++FF GK+  +  NPDE           +LSG+     +D+LLLDVTP SLG+ET GGVMT +I +NTTIP K  QV+ST  DNQ  V I+V++GER     N LLG+F L GIPPAPRGVPQI V FDIDANGIL+V A+DK  G++NKITI  + G LS+ EI++M+++AE
Sbjct:  342 GGQTRMPKVMEKVKEFF-GKDPRRDVNPDEAVAVGAAIQGQVLSGDR----KDVLLLDVTPLSLGIETLGGVMTKMINKNTTIPTKHAQVYSTADDNQGAVTIKVFQGEREMAAGNKLLGEFNLEGIPPAPRGVPQIEVTFDIDANGILHVGAKDKATGKENKITIKANSG-LSEAEIDQMIKDAE 521
The following BLAST results are available for this feature:
BLAST of CB304793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_PSEE41.774e-4755.91Chaperone protein dnaK OS=Pseudomonas entomophila ... [more]
DNAK_POLSQ1.774e-4754.84Chaperone protein dnaK OS=Polynucleobacter sp. (st... [more]
DNAK_KINRD1.774e-4752.69Chaperone protein dnaK OS=Kineococcus radiotoleran... [more]
DNAK_CHLFF1.774e-4753.76Chaperone protein dnaK OS=Chlamydophila felis (str... [more]
DNAK_CELJU1.774e-4756.45Chaperone protein dnaK OS=Cellvibrio japonicus (st... [more]
DNAK_CAMJR1.774e-4756.45Chaperone protein dnaK OS=Campylobacter jejuni (st... [more]
DNAK_CAMJE1.774e-4756.45Chaperone protein dnaK OS=Campylobacter jejuni GN=... [more]
DNAK_CAMJD1.774e-4756.45Chaperone protein dnaK OS=Campylobacter jejuni sub... [more]
DNAK_CAMJ81.774e-4756.45Chaperone protein dnaK OS=Campylobacter jejuni sub... [more]
DNAK_BURCJ1.774e-4754.84Chaperone protein dnaK OS=Burkholderia cepacia (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_A03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_A03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304793 ID=CB304793; Name=CB304793; organism=Citrus sinensis; type=EST; length=585bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGCCTCTTGAACCATCTTCT
CAATTTCATCCTTTGAAAGTCTTCCTTTGTCATTAGCGATGGTGATCTTG
TTCTTTTGACCAGGGGTCTTGTCCTCGGCAGACACATTCAGGATACCATT
GGCATCGATGTCGAAGCACACAGTGATTTGAGGAACACCCCTAGGAGCTG
GGGGAATACCAGAGAGCTCGAATTTACCCAACAAGTTATTGTCCCTGGTT
CTTGTCCTTTCACCTTCATAAACTTGGATCAACACACCAGGTTGGTTGTC
AAAGTAAGTTGAAAAAACCTGCTCCTTCTTGGGGGGAATGGTCGTGTTCC
TTGGAATCAACACAGTCATGACACCACCAGCAGTCTCCAAACCAAGGGAG
AAAGGCGTGACATCCAATAGCAAAAGATCCTGCACCTTCTCATTACCCTC
ACCACTCAAGATAGCAGCTTGCACAGCAGCACCATAGGCAACAGCCTCAT
CGGGGTTGGTGCTCTTGCAAAGCTCCTTCCCATTAAAGAAATCTTGCAAA
AGCTGCTGGACTTTGGGAATCCTAGTAAATCCTCC
back to top