CB304793 | Citrus Genome Database

Overview


Name	CB304793
Unique Name	CB304793
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	585

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig11598	contig	Csv1_Contig11598:259..843.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

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BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_PSE14 (Chaperone protein dnaK OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=dnaK PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.317e-47
Identity = 104/186 (55.91%), Postives = 132/186 (70.97%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+L+ +FF GKE  K  NPDE          A+L+G+    V+D+LLLDV+P +LG+ET GGVMT LI +NTTIP KK QVFST  DNQ  V I V +GER +   N  LGKF+L+ IPPAPRGVPQI V FDIDANGIL+V A+DK  G++  I I  + G LS++EI++MV++AE
Sbjct:  341 GGQTRMPLVQKLVTEFF-GKEARKDVNPDEAVAMGAAIQGAVLAGD----VKDVLLLDVSPLTLGIETMGGVMTALIEKNTTIPTKKSQVFSTADDNQNAVTIHVLQGERKQAGQNKSLGKFDLAEIPPAPRGVPQIEVTFDIDANGILHVGAKDKATGKQQSIVIKANSG-LSEEEIQQMVRDAE 520

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_JANSC (Chaperone protein dnaK OS=Jannaschia sp. (strain CCS1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.317e-47
Identity = 103/186 (55.38%), Postives = 127/186 (68.28%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+PKV   +  FF GKE  K  NPDE           +L G+    V+D++LLDVTP S+G+ET GGV T LI RNTTIP KK Q+FST  DNQ  V ++V++GER    DN +LG+F L GIPPAPRGVPQI V FDIDANGI++V A+DK  G++ +ITI    G LS D+IE MV+EAE
Sbjct:  336 GGMTRMPKVIDEVTKFF-GKEPHKGVNPDEVVAMGAAIQAGVLQGD----VKDVVLLDVTPLSMGIETLGGVFTRLIDRNTTIPTKKSQIFSTADDNQSAVTLRVFQGEREMAADNKILGQFNLEGIPPAPRGVPQIEVTFDIDANGIVSVGAKDKGTGKEQQITI-QASGGLSDDDIEAMVREAE 515

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_GLUDA (Chaperone protein dnaK OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=dnaK PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.317e-47
Identity = 104/186 (55.91%), Postives = 130/186 (69.89%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+PKV + ++ FF GKE  ++ NPDE          A+L G+    V+D+LLLDVTP SLG+ET GGV T LI RNTTIP KK Q FST  DNQ  V I+V++GER    DN LLG F+L+GI PAPRGVPQI V FDIDANGI++VSA+DK   ++ +I I    G LS+ +IEKMV++AE
Sbjct:  336 GGMTRMPKVIEAVKQFF-GKEPARNVNPDEVVAIGAAVQGAVLKGD----VKDVLLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSQTFSTAEDNQGAVTIKVFQGEREMAADNKLLGNFDLTGIAPAPRGVPQIEVTFDIDANGIVSVSAKDKATNKEQQIKI-QASGGLSESDIEKMVKDAE 515

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_ERWCT (Chaperone protein dnaK OS=Erwinia carotovora subsp. atroseptica GN=dnaK PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.317e-47
Identity = 105/186 (56.45%), Postives = 129/186 (69.35%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ + DFF GKE  K  NPDE           +LSG+    V+D+LLLDV+P SLG+ET GGVMT LI +NTTIP K  QVFST  DNQ  V I V +GER R  DN  LG+F L GI  APRG+PQI V FDIDA+GIL+VSA+DK  G++ KITI    G L+++EI+KMV++AE
Sbjct:  341 GGQTRMPLVQKKVADFF-GKEPRKDVNPDEAVAIGAAVQGGVLSGD----VKDVLLLDVSPLSLGIETMGGVMTALIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAHDNKSLGQFNLDGIQAAPRGMPQIEVTFDIDADGILHVSAKDKNSGREQKITIKASSG-LNEEEIQKMVRDAE 520

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_DESVV (Chaperone protein dnaK OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=dnaK PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.317e-47
Identity = 104/186 (55.91%), Postives = 129/186 (69.35%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ + +FF GKE  +S NPDE           IL+G+    V+D+LLLDVTP SLG+ET GGV T LI RNTTIP +K Q F+T  DNQP V I V +GER    DN  LG+FEL+GIPPA RGVPQI V FDIDANGI+NV+A+D   G++  I I    G LS+DEI+++V+EAE
Sbjct:  336 GGMTRMPLVQKRVSEFF-GKEPNRSVNPDEVVAMGAAIQGGILAGD----VKDVLLLDVTPLSLGIETLGGVFTRLIERNTTIPTRKSQTFTTAADNQPSVSIHVLQGERPMASDNMTLGRFELTGIPPAMRGVPQIEVSFDIDANGIVNVAAKDLGTGKEQSIRITASSG-LSEDEIQRLVKEAE 515

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_DESVH (Chaperone protein dnaK OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=dnaK PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.317e-47
Identity = 104/186 (55.91%), Postives = 129/186 (69.35%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ + +FF GKE  +S NPDE           IL+G+    V+D+LLLDVTP SLG+ET GGV T LI RNTTIP +K Q F+T  DNQP V I V +GER    DN  LG+FEL+GIPPA RGVPQI V FDIDANGI+NV+A+D   G++  I I    G LS+DEI+++V+EAE
Sbjct:  336 GGMTRMPLVQKRVSEFF-GKEPNRSVNPDEVVAMGAAIQGGILAGD----VKDVLLLDVTPLSLGIETLGGVFTRLIERNTTIPTRKSQTFTTAADNQPSVSIHVLQGERPMASDNMTLGRFELTGIPPAMRGVPQIEVSFDIDANGIVNVAAKDLGTGKEQSIRITASSG-LSEDEIQRLVKEAE 515

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_DESAA (Chaperone protein dnaK OS=Desulfatibacillum alkenivorans (strain AK-01) GN=dnaK PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.317e-47
Identity = 104/186 (55.91%), Postives = 128/186 (68.82%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ ++  F GKE  K  NPDE           +L G+    V+D+LLLDVTP SLG+ET GGVMT LI +NTTIP KK QVFST  DNQP V I V +GER     N  LG+FEL GIPPAPRGVPQI V FDIDANGI++VSA+D+  G++  I I    G L+++EIE+MV++AE
Sbjct:  336 GGMTRMPAVQERVKKIF-GKEPHKGVNPDEVVAIGAGIQGGVLMGD----VKDVLLLDVTPLSLGIETLGGVMTKLIEKNTTIPTKKSQVFSTAADNQPAVSIHVLQGEREMATGNKTLGRFELVGIPPAPRGVPQIEVTFDIDANGIVSVSAKDQGTGKEQSIKITASSG-LTEEEIEQMVKDAE 515

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_BURS3 (Chaperone protein dnaK OS=Burkholderia sp. (strain 383) GN=dnaK PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.317e-47
Identity = 102/186 (54.84%), Postives = 132/186 (70.97%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+PKV + +++FF GK+  +  NPDE           +LSG+     +D+LLLDVTP SLG+ET GGVMT +I +NTTIP K  QV+ST  DNQ  V I+V++GER     N LLG+F L GIPPAPRGVPQI V FDIDANGIL+V A+DK  G++NKITI  + G LS+ EI++M+++AE
Sbjct:  342 GGQTRMPKVLEKVKEFF-GKDPRRDVNPDEAVAVGAAIQGQVLSGDR----KDVLLLDVTPLSLGIETLGGVMTKMISKNTTIPTKHAQVYSTADDNQGAVTIKVFQGEREMAAGNKLLGEFNLEGIPPAPRGVPQIEVTFDIDANGILHVGAKDKATGKENKITIKANSG-LSEAEIDQMIKDAE 521

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_BURCM (Chaperone protein dnaK OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=dnaK PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.317e-47
Identity = 101/186 (54.30%), Postives = 132/186 (70.97%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+PKVQ+ +++FF GK+  +  NPDE           +LSG+     +D+LLLDVTP SLG+ET GGVMT +I +NTTIP K  QV+ST  DNQ  V I+V++GER     N LLG+F L GIPP+PRGVPQI V FDIDANGIL+V A+DK  G++NKITI  + G L+  EI++M+++AE
Sbjct:  342 GGQTRMPKVQEKVKEFF-GKDPRRDVNPDEAVAVGAAIQGQVLSGDR----KDVLLLDVTPLSLGIETLGGVMTKMISKNTTIPTKHAQVYSTADDNQSAVTIKVFQGEREMAAGNKLLGEFNLEGIPPSPRGVPQIEVTFDIDANGILHVGAKDKATGKENKITIKANSG-LTDAEIDQMIKDAE 521

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_BURA4 (Chaperone protein dnaK OS=Burkholderia ambifaria (strain MC40-6) GN=dnaK PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.317e-47
Identity = 101/186 (54.30%), Postives = 132/186 (70.97%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+PKVQ+ +++FF GK+  +  NPDE           +LSG+     +D+LLLDVTP SLG+ET GGVMT +I +NTTIP K  QV+ST  DNQ  V I+V++GER     N LLG+F L GIPP+PRGVPQI V FDIDANGIL+V A+DK  G++NKITI  + G L+  EI++M+++AE
Sbjct:  342 GGQTRMPKVQEKVKEFF-GKDPRRDVNPDEAVAVGAAIQGQVLSGDR----KDVLLLDVTPLSLGIETLGGVMTKMISKNTTIPTKHAQVYSTADDNQSAVTIKVFQGEREMAAGNKLLGEFNLEGIPPSPRGVPQIEVTFDIDANGILHVGAKDKATGKENKITIKANSG-LTDAEIDQMIKDAE 521

The following BLAST results are available for this feature:

BLAST of CB304793 vs. ExPASy Swiss-Prot

BLAST of CB304793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
DNAK_PSE14	2.317e-47	55.91	Chaperone protein dnaK OS=Pseudomonas syringae pv....	[more]
DNAK_JANSC	2.317e-47	55.38	Chaperone protein dnaK OS=Jannaschia sp. (strain C...	[more]
DNAK_GLUDA	2.317e-47	55.91	Chaperone protein dnaK OS=Gluconacetobacter diazot...	[more]
DNAK_ERWCT	2.317e-47	56.45	Chaperone protein dnaK OS=Erwinia carotovora subsp...	[more]
DNAK_DESVV	2.317e-47	55.91	Chaperone protein dnaK OS=Desulfovibrio vulgaris s...	[more]
DNAK_DESVH	2.317e-47	55.91	Chaperone protein dnaK OS=Desulfovibrio vulgaris (...	[more]
DNAK_DESAA	2.317e-47	55.91	Chaperone protein dnaK OS=Desulfatibacillum alkeni...	[more]
DNAK_BURS3	2.317e-47	54.84	Chaperone protein dnaK OS=Burkholderia sp. (strain...	[more]
DNAK_BURCM	2.317e-47	54.30	Chaperone protein dnaK OS=Burkholderia ambifaria (...	[more]
DNAK_BURA4	2.317e-47	54.30	Chaperone protein dnaK OS=Burkholderia ambifaria (...	[more]

Pages

Properties


Property Name	Value
Genbank description	FLAVEDO0002_IVaR_A03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_A03 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB304793 ID=CB304793; Name=CB304793; organism=Citrus sinensis; type=EST; length=585bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGCCTCTTGAACCATCTTCT
CAATTTCATCCTTTGAAAGTCTTCCTTTGTCATTAGCGATGGTGATCTTG
TTCTTTTGACCAGGGGTCTTGTCCTCGGCAGACACATTCAGGATACCATT
GGCATCGATGTCGAAGCACACAGTGATTTGAGGAACACCCCTAGGAGCTG
GGGGAATACCAGAGAGCTCGAATTTACCCAACAAGTTATTGTCCCTGGTT
CTTGTCCTTTCACCTTCATAAACTTGGATCAACACACCAGGTTGGTTGTC
AAAGTAAGTTGAAAAAACCTGCTCCTTCTTGGGGGGAATGGTCGTGTTCC
TTGGAATCAACACAGTCATGACACCACCAGCAGTCTCCAAACCAAGGGAG
AAAGGCGTGACATCCAATAGCAAAAGATCCTGCACCTTCTCATTACCCTC
ACCACTCAAGATAGCAGCTTGCACAGCAGCACCATAGGCAACAGCCTCAT
CGGGGTTGGTGCTCTTGCAAAGCTCCTTCCCATTAAAGAAATCTTGCAAA
AGCTGCTGGACTTTGGGAATCCTAGTAAATCCTCC