CB304793

Overview
NameCB304793
Unique NameCB304793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11598 contig Csv1_Contig11598:259..843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_YERP3 (Chaperone protein dnaK OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=dnaK PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.027e-47
Identity = 106/186 (56.99%), Postives = 129/186 (69.35%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ + DFF GKE  K  NPDE           +LSGE    V+D+LLLDVTP SLG+ET GGVMT LI +NTTIP K  QVFST  DNQ  V I V +GER R +DN  LG+F L GI  APRG+ QI V FDIDA+GIL+VSA+DK  G++ KITI    G L+++EI+KMV++AE
Sbjct:  341 GGQTRMPMVQKKVADFF-GKEPRKDVNPDEAVAIGAAVQGGVLSGE----VKDVLLLDVTPLSLGIETMGGVMTPLITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAQDNKSLGQFNLDGIQAAPRGMAQIEVTFDIDADGILHVSAKDKNTGREQKITIKASSG-LNEEEIQKMVRDAE 520
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_SULDN (Chaperone protein dnaK OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=dnaK PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.027e-47
Identity = 102/186 (54.84%), Postives = 123/186 (66.13%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P  Q+++  FF GK+L K  NPDE           +L G+    V+D+LLLDVTP SLG+ET GGV T +I + TTIP KK Q+FST  DNQP V I V +GER   RDN  LG FEL  I  APRGVPQI V FDIDANGIL VS+ DK  G+   ITI+   G LS++EI KMV++AE
Sbjct:  335 GGSTRVPLAQEMVSKFFGGKKLNKGVNPDEVVAAGAAIQGGVLRGD----VKDVLLLDVTPLSLGIETLGGVATKIIEKGTTIPVKKSQIFSTAEDNQPAVSISVVQGEREFARDNKSLGLFELGNIAAAPRGVPQIEVTFDIDANGILTVSSTDKGTGKSQSITISGSSG-LSEEEINKMVKDAE 515
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_PSEU5 (Chaperone protein dnaK OS=Pseudomonas stutzeri (strain A1501) GN=dnaK PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.027e-47
Identity = 104/186 (55.91%), Postives = 132/186 (70.97%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQQ + +FF GKE  K  NPDE          A+L+G+    V+D+LLLDV+P +LG+ET GGVMT LI +NTTIP KK QVFST  DNQ  V I V +GER +   N  LG+F+L+ IPPAPRG+PQI V FDIDANGIL+VSA+DK  G++  I I  + G LS++EIE+MV++AE
Sbjct:  341 GGQTRMPLVQQKVAEFF-GKEARKDVNPDEAVAMGAAIQGAVLAGD----VKDVLLLDVSPLTLGIETLGGVMTPLIEKNTTIPTKKSQVFSTADDNQSAVTIHVLQGERKQAAQNKSLGRFDLAEIPPAPRGMPQIEVTFDIDANGILHVSAKDKATGKQQSIVIKANSG-LSEEEIEQMVRDAE 520
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_PSEMY (Chaperone protein dnaK OS=Pseudomonas mendocina (strain ymp) GN=dnaK PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.027e-47
Identity = 104/186 (55.91%), Postives = 132/186 (70.97%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ + +FF GKE  K  NPDE          A+L+G+    V+D+LLLDV+P +LG+ET GGVMT LI +NTTIP KK QVFST  DNQ  V I V +GER +   N  LGKF+L+ IPPAPRGVPQI V FDIDANGIL+VSA+DK  G++  I I  + G LS++EI++MV++AE
Sbjct:  341 GGQTRMPLVQKTVAEFF-GKEPRKDVNPDEAVAMGAAIQGAVLAGD----VKDVLLLDVSPLTLGIETMGGVMTALIEKNTTIPTKKSQVFSTADDNQSAVTIHVLQGERKQAAQNKSLGKFDLAEIPPAPRGVPQIEVTFDIDANGILHVSAKDKATGKQQSIVIKANSG-LSEEEIQQMVRDAE 520
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_PROVI (Chaperone protein dnaK OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=dnaK PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.027e-47
Identity = 104/186 (55.91%), Postives = 127/186 (68.28%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ L++DFF GKE  KS NPDE           +L G+    V D+LLLDVTP SLG+ET GGVMT LI  NTTIP KK++VFST  DNQ  V + V +GER+   DN  LG+F L  IPPAPRG+PQI V FDID+NGIL+VSA+DK  G++  I I     +L+  EIEKM ++A+
Sbjct:  334 GGSTRIPKVQALVKDFF-GKEPNKSVNPDEVVAVGAAIQGGVLKGD----VTDVLLLDVTPLSLGIETLGGVMTKLIDANTTIPTKKQEVFSTAGDNQTSVEVHVLQGERSMATDNKTLGRFHLGDIPPAPRGLPQIEVAFDIDSNGILHVSAKDKATGKEQSIKI-EASSKLTDAEIEKMKEDAK 513
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_PROMH (Chaperone protein dnaK OS=Proteus mirabilis (strain HI4320) GN=dnaK PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.027e-47
Identity = 104/186 (55.91%), Postives = 129/186 (69.35%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ + +FF GKE  K  NPDE           +L+G+    V+D+LLLDVTP SLG+ET GGVMT LI +NTTIP K  QVFST  DNQ  V I V +GER R  DN  LG+F L GI PAPRG+PQI V FDIDA+GIL+VSA+DK  G++  ITI    G L+++EI+KMV++AE
Sbjct:  341 GGQTRMPMVQKTVAEFF-GKEPRKDVNPDEAVAMGAAVQGGVLAGD----VKDVLLLDVTPLSLGIETMGGVMTSLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRASDNKSLGQFNLDGIQPAPRGMPQIEVTFDIDADGILHVSAKDKNSGREQNITIKASSG-LNEEEIQKMVRDAE 520
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_POLNA (Chaperone protein dnaK OS=Polaromonas naphthalenivorans (strain CJ2) GN=dnaK PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.027e-47
Identity = 103/186 (55.38%), Postives = 130/186 (69.89%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+PKVQ+ +++FF GKE  K  NPDE           +LSG+ +    D+LLLDVTP SLG+ET GGVMT +I +NTTIP K  Q FST  DNQP V I+V++GER     N  LG+F L GIPPA RG PQI V FDIDANGIL+V A+DK  G++NKITI  + G L++ EI++MV++AE
Sbjct:  342 GGMTRMPKVQEKVKEFF-GKEPRKDVNPDEAVAVGAAIQGQVLSGDRS----DVLLLDVTPLSLGIETMGGVMTKMIKKNTTIPTKFAQTFSTAEDNQPAVTIKVFQGEREIASGNKALGEFNLEGIPPASRGTPQIEVSFDIDANGILHVGAKDKGTGKENKITIKANSG-LTEAEIQQMVKDAE 521
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_LEIXX (Chaperone protein dnaK OS=Leifsonia xyli subsp. xyli GN=dnaK PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.027e-47
Identity = 99/186 (53.23%), Postives = 127/186 (68.28%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P V +L++    G+E  K  NPDE           +L GE     +D+LL+DVTP SLG+ET GG+MT LI RNT IP K+ + F+T  DNQP V IQV++GER  TRDN  LG FEL+GI PAPRG+PQ+ V FDIDANGI++VSA+DK  G++  +TI      L KD+IE+MV+EAE
Sbjct:  318 GGSTRMPAVSELVKQETGGQEPNKGVNPDEVVAVGAALQAGVLKGER----KDVLLIDVTPLSLGIETKGGIMTKLIERNTAIPTKRSETFTTADDNQPSVAIQVFQGEREFTRDNKPLGTFELTGIAPAPRGIPQVEVTFDIDANGIVHVSAKDKGTGKEQSMTITGGSS-LPKDDIERMVREAE 498
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_HALHL (Chaperone protein dnaK OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.027e-47
Identity = 101/186 (54.30%), Postives = 130/186 (69.89%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+PKVQ+ ++++F G++  K  NPDE           +L G+    V+D+LLLDVTP SLG+ET GGVMT +I +NTTIP K  Q FST  DNQ  V + V +GER   +DN  LG+F+L+ IPP+PRGVPQI V FDIDANGILNVSA+DK  G++  I I    G L++DEIE+MV+EAE
Sbjct:  341 GGQTRMPKVQEKVKEYF-GQDPRKDVNPDEAVAVGAAIQAGVLGGD----VKDVLLLDVTPLSLGIETLGGVMTKIIEKNTTIPTKGTQTFSTAEDNQTAVTVHVLQGEREMAKDNKSLGRFDLTDIPPSPRGVPQIEVAFDIDANGILNVSAKDKATGKETGIEIKASSG-LTEDEIERMVKEAE 520
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_GEOSM (Chaperone protein dnaK OS=Geobacter sp. (strain M21) GN=dnaK PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.027e-47
Identity = 105/186 (56.45%), Postives = 127/186 (68.28%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ +QD F GK   +  NPDE           +L G+    V+D+LLLDVTP SLG+ET GGV+T LI +N+TIP +K QVFST  DNQP V I V +GER    DN  LG FELSGIP APRGVPQI V FDIDANGI++VSA+D   G++  I I    G LSK+E+EKMV+EAE
Sbjct:  336 GGMTRMPIVQKKVQDIF-GKVPNRGVNPDEVVAIGAAIQGGVLRGD----VKDVLLLDVTPLSLGIETLGGVLTKLIDKNSTIPCRKSQVFSTAADNQPAVSIHVLQGEREMAADNKTLGNFELSGIPSAPRGVPQIEVTFDIDANGIVHVSAKDLGTGKEQSIRITASSG-LSKEEVEKMVREAE 515
The following BLAST results are available for this feature:
BLAST of CB304793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_YERP33.027e-4756.99Chaperone protein dnaK OS=Yersinia pseudotuberculo... [more]
DNAK_SULDN3.027e-4754.84Chaperone protein dnaK OS=Sulfurimonas denitrifica... [more]
DNAK_PSEU53.027e-4755.91Chaperone protein dnaK OS=Pseudomonas stutzeri (st... [more]
DNAK_PSEMY3.027e-4755.91Chaperone protein dnaK OS=Pseudomonas mendocina (s... [more]
DNAK_PROVI3.027e-4755.91Chaperone protein dnaK OS=Prosthecochloris vibriof... [more]
DNAK_PROMH3.027e-4755.91Chaperone protein dnaK OS=Proteus mirabilis (strai... [more]
DNAK_POLNA3.027e-4755.38Chaperone protein dnaK OS=Polaromonas naphthaleniv... [more]
DNAK_LEIXX3.027e-4753.23Chaperone protein dnaK OS=Leifsonia xyli subsp. xy... [more]
DNAK_HALHL3.027e-4754.30Chaperone protein dnaK OS=Halorhodospira halophila... [more]
DNAK_GEOSM3.027e-4756.45Chaperone protein dnaK OS=Geobacter sp. (strain M2... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_A03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_A03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304793 ID=CB304793; Name=CB304793; organism=Citrus sinensis; type=EST; length=585bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGCCTCTTGAACCATCTTCT
CAATTTCATCCTTTGAAAGTCTTCCTTTGTCATTAGCGATGGTGATCTTG
TTCTTTTGACCAGGGGTCTTGTCCTCGGCAGACACATTCAGGATACCATT
GGCATCGATGTCGAAGCACACAGTGATTTGAGGAACACCCCTAGGAGCTG
GGGGAATACCAGAGAGCTCGAATTTACCCAACAAGTTATTGTCCCTGGTT
CTTGTCCTTTCACCTTCATAAACTTGGATCAACACACCAGGTTGGTTGTC
AAAGTAAGTTGAAAAAACCTGCTCCTTCTTGGGGGGAATGGTCGTGTTCC
TTGGAATCAACACAGTCATGACACCACCAGCAGTCTCCAAACCAAGGGAG
AAAGGCGTGACATCCAATAGCAAAAGATCCTGCACCTTCTCATTACCCTC
ACCACTCAAGATAGCAGCTTGCACAGCAGCACCATAGGCAACAGCCTCAT
CGGGGTTGGTGCTCTTGCAAAGCTCCTTCCCATTAAAGAAATCTTGCAAA
AGCTGCTGGACTTTGGGAATCCTAGTAAATCCTCC
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