CB304793

Overview
NameCB304793
Unique NameCB304793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HS71L_PIG (Heat shock 70 kDa protein 1-like OS=Sus scrofa GN=HSPA1L PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 3.551e-72
Identity = 137/186 (73.66%), Postives = 156/186 (83.87%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ+LLQD+FNG++L KS NPDE          AIL G+ +EKVQDLLLLDV P SLGLETAGGVMTVLI RN+TIP K+ Q+F+TY DNQPGVLIQVYEGER  TRDNNLLG+F+L+GIPPAPRGVPQI V FDIDANGILNV+A DK+ G+ NKITI NDKGRLSK+EIE+MV +AE
Sbjct:  340 GGSTRIPKVQRLLQDYFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSEKVQDLLLLDVAPLSLGLETAGGVMTVLIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFDLTGIPPAPRGVPQIEVTFDIDANGILNVTATDKSTGKANKITITNDKGRLSKEEIERMVLDAE 525
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP72_PICAN (Heat shock protein 70 2 OS=Pichia angusta GN=HSA2 PE=3 SV=2)

HSP 1 Score: 270.396 bits (690), Expect = 4.637e-72
Identity = 138/186 (74.19%), Postives = 152/186 (81.72%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ+L+ DFFNGKE  KS NPDE          AIL+G+ + K QDLLLLDV P SLG+ETAGGVMT LIPRNTTIP KK ++FSTY DNQPGVLIQVYEGER RT+DNNLLGKFELSGIPPAPRGVPQI V FDIDANGILNVSA +K  G+  KITI NDKGRLS++EIE+MV EAE
Sbjct:  336 GGSTRIPKVQKLVSDFFNGKEPNKSINPDEAVAYGAAVQAAILTGDTSSKTQDLLLLDVAPLSLGIETAGGVMTKLIPRNTTIPTKKSEIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGKSEKITITNDKGRLSQEEIERMVSEAE 521
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HS71L_BOVIN (Heat shock 70 kDa protein 1-like OS=Bos taurus GN=HSPA1L PE=3 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 4.637e-72
Identity = 137/186 (73.66%), Postives = 156/186 (83.87%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ+LLQD+FNG++L KS NPDE          AIL G+ +EKVQDLLLLDV P SLGLETAGGVMTVLI RN+TIP K+ Q+F+TY DNQPGVLIQVYEGER  TRDNNLLG+F+L+GIPPAPRGVPQI V FDIDANGILNV+A DK+ G+ NKITI NDKGRLSK+EIE+MV +AE
Sbjct:  340 GGSTRIPKVQRLLQDYFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSEKVQDLLLLDVAPLSLGLETAGGVMTVLIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFDLTGIPPAPRGVPQIEVTFDIDANGILNVTAMDKSTGKANKITITNDKGRLSKEEIERMVLDAE 525
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP7C_ICTPU (Heat shock cognate 71 kDa protein OS=Ictalurus punctatus GN=hsc70 PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 6.056e-72
Identity = 136/186 (73.12%), Postives = 154/186 (82.80%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPK+++LLQDFFNGKEL KS NPDE              G+ +E VQDL+LLDVTP SLG+ETAGGVMTVLI RNTTIP K+ Q F+TY DNQPGVLIQVYEGER  T+DNNLLGKFEL+GIPPAPRGVPQI V FDIDANGI+NVSA DK+ G++NKITI NDKGRLSK++IE+MVQEAE
Sbjct:  338 GGSTRIPKMEKLLQDFFNGKELNKSINPDEAVAYGAAVQAESSLGDKSENVQDLVLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGIMNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAE 523
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP70_ECHGR (Heat shock cognate 70 kDa protein OS=Echinococcus granulosus GN=HSP70 PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 6.056e-72
Identity = 139/186 (74.73%), Postives = 152/186 (81.72%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ+LLQDFFNG+EL KS NPDE          AIL+G+ +E VQDLLLLDV P SLGLETAGGVMT LI RNTTIP K+ Q F+TY DNQPGVLIQVYEGER   RDNNLLGKFELSGIPP PRGVPQI V FDIDANGILNVSA DK+ G++NKITI  DKGRLSK+EIE+MV +AE
Sbjct:  340 GGSTRIPKVQKLLQDFFNGRELNKSINPDEAVAYGAAVQAAILTGDKSEAVQDLLLLDVAPLSLGLETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMKRDNNLLGKFELSGIPPGPRGVPQIEVTFDIDANGILNVSAVDKSTGKQNKITITRDKGRLSKEEIERMVNDAE 525
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP72_RAT (Heat shock-related 70 kDa protein 2 OS=Rattus norvegicus GN=Hspa2 PE=2 SV=2)

HSP 1 Score: 268.855 bits (686), Expect = 1.349e-71
Identity = 136/186 (73.12%), Postives = 154/186 (82.80%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPK+Q+LLQDFFNGKEL KS NPDE          AIL G+ +E VQDLLLLDVTP SLG+ETAGGVMT LI RNTTIP K+ Q F+TY DNQ  VL+QVYEGER  T+DNNLLGKF+L+GIPPAPRGVPQI V FDIDANGILNV+A DK+ G++NKITI NDKGRLSKD+I++MVQEAE
Sbjct:  341 GGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIGDKSENVQDLLLLDVTPLSLGIETAGGVMTPLIKRNTTIPTKQTQTFTTYSDNQSSVLVQVYEGERAMTKDNNLLGKFDLTGIPPAPRGVPQIEVTFDIDANGILNVTAADKSTGKENKITITNDKGRLSKDDIDRMVQEAE 526
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP72_MOUSE (Heat shock-related 70 kDa protein 2 OS=Mus musculus GN=Hspa2 PE=1 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.349e-71
Identity = 136/186 (73.12%), Postives = 154/186 (82.80%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPK+Q+LLQDFFNGKEL KS NPDE          AIL G+ +E VQDLLLLDVTP SLG+ETAGGVMT LI RNTTIP K+ Q F+TY DNQ  VL+QVYEGER  T+DNNLLGKF+L+GIPPAPRGVPQI V FDIDANGILNV+A DK+ G++NKITI NDKGRLSKD+I++MVQEAE
Sbjct:  341 GGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIGDKSENVQDLLLLDVTPLSLGIETAGGVMTPLIKRNTTIPTKQTQTFTTYSDNQSSVLVQVYEGERAMTKDNNLLGKFDLTGIPPAPRGVPQIEVTFDIDANGILNVTAADKSTGKENKITITNDKGRLSKDDIDRMVQEAE 526
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP72_HUMAN (Heat shock-related 70 kDa protein 2 OS=Homo sapiens GN=HSPA2 PE=1 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.349e-71
Identity = 136/186 (73.12%), Postives = 154/186 (82.80%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPK+Q+LLQDFFNGKEL KS NPDE          AIL G+ +E VQDLLLLDVTP SLG+ETAGGVMT LI RNTTIP K+ Q F+TY DNQ  VL+QVYEGER  T+DNNLLGKF+L+GIPPAPRGVPQI V FDIDANGILNV+A DK+ G++NKITI NDKGRLSKD+I++MVQEAE
Sbjct:  341 GGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIGDKSENVQDLLLLDVTPLSLGIETAGGVMTPLIKRNTTIPTKQTQTFTTYSDNQSSVLVQVYEGERAMTKDNNLLGKFDLTGIPPAPRGVPQIEVTFDIDANGILNVTAADKSTGKENKITITNDKGRLSKDDIDRMVQEAE 526
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP72_CAPHI (Heat shock-related 70 kDa protein 2 OS=Capra hircus GN=HSPA2 PE=3 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.349e-71
Identity = 136/186 (73.12%), Postives = 154/186 (82.80%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPK+Q+LLQDFFNGKEL KS NPDE          AIL G+ +E VQDLLLLDVTP SLG+ETAGGVMT LI RNTTIP K+ Q F+TY DNQ  VL+QVYEGER  T+DNNLLGKF+L+GIPPAPRGVPQI V FDIDANGILNV+A DK+ G++NKITI NDKGRLSKD+I++MVQEAE
Sbjct:  341 GGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIGDKSENVQDLLLLDVTPLSLGIETAGGVMTPLIKRNTTIPTKQTQTFTTYSDNQSSVLVQVYEGERAMTKDNNLLGKFDLTGIPPAPRGVPQIEVTFDIDANGILNVTAADKSTGKENKITITNDKGRLSKDDIDRMVQEAE 526
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP72_BOVIN (Heat shock-related 70 kDa protein 2 OS=Bos taurus GN=HSPA2 PE=2 SV=2)

HSP 1 Score: 268.855 bits (686), Expect = 1.349e-71
Identity = 136/186 (73.12%), Postives = 154/186 (82.80%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPK+Q+LLQDFFNGKEL KS NPDE          AIL G+ +E VQDLLLLDVTP SLG+ETAGGVMT LI RNTTIP K+ Q F+TY DNQ  VL+QVYEGER  T+DNNLLGKF+L+GIPPAPRGVPQI V FDIDANGILNV+A DK+ G++NKITI NDKGRLSKD+I++MVQEAE
Sbjct:  341 GGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIGDKSENVQDLLLLDVTPLSLGIETAGGVMTPLIKRNTTIPTKQTQTFTTYSDNQSSVLVQVYEGERAMTKDNNLLGKFDLTGIPPAPRGVPQIEVTFDIDANGILNVTAADKSTGKENKITITNDKGRLSKDDIDRMVQEAE 526
The following BLAST results are available for this feature:
BLAST of CB304793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HS71L_PIG3.551e-7273.66Heat shock 70 kDa protein 1-like OS=Sus scrofa GN=... [more]
HSP72_PICAN4.637e-7274.19Heat shock protein 70 2 OS=Pichia angusta GN=HSA2 ... [more]
HS71L_BOVIN4.637e-7273.66Heat shock 70 kDa protein 1-like OS=Bos taurus GN=... [more]
HSP7C_ICTPU6.056e-7273.12Heat shock cognate 71 kDa protein OS=Ictalurus pun... [more]
HSP70_ECHGR6.056e-7274.73Heat shock cognate 70 kDa protein OS=Echinococcus ... [more]
HSP72_RAT1.349e-7173.12Heat shock-related 70 kDa protein 2 OS=Rattus norv... [more]
HSP72_MOUSE1.349e-7173.12Heat shock-related 70 kDa protein 2 OS=Mus musculu... [more]
HSP72_HUMAN1.349e-7173.12Heat shock-related 70 kDa protein 2 OS=Homo sapien... [more]
HSP72_CAPHI1.349e-7173.12Heat shock-related 70 kDa protein 2 OS=Capra hircu... [more]
HSP72_BOVIN1.349e-7173.12Heat shock-related 70 kDa protein 2 OS=Bos taurus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_A03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_A03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304793 ID=CB304793; Name=CB304793; organism=Citrus sinensis; type=EST; length=585bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGCCTCTTGAACCATCTTCT
CAATTTCATCCTTTGAAAGTCTTCCTTTGTCATTAGCGATGGTGATCTTG
TTCTTTTGACCAGGGGTCTTGTCCTCGGCAGACACATTCAGGATACCATT
GGCATCGATGTCGAAGCACACAGTGATTTGAGGAACACCCCTAGGAGCTG
GGGGAATACCAGAGAGCTCGAATTTACCCAACAAGTTATTGTCCCTGGTT
CTTGTCCTTTCACCTTCATAAACTTGGATCAACACACCAGGTTGGTTGTC
AAAGTAAGTTGAAAAAACCTGCTCCTTCTTGGGGGGAATGGTCGTGTTCC
TTGGAATCAACACAGTCATGACACCACCAGCAGTCTCCAAACCAAGGGAG
AAAGGCGTGACATCCAATAGCAAAAGATCCTGCACCTTCTCATTACCCTC
ACCACTCAAGATAGCAGCTTGCACAGCAGCACCATAGGCAACAGCCTCAT
CGGGGTTGGTGCTCTTGCAAAGCTCCTTCCCATTAAAGAAATCTTGCAAA
AGCTGCTGGACTTTGGGAATCCTAGTAAATCCTCC
back to top