CB304793 | Citrus Genome Database

Overview


Name	CB304793
Unique Name	CB304793
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	585

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP71_PICAN (Heat shock protein 70 1 OS=Pichia angusta GN=HSA1 PE=1 SV=2)

HSP 1 Score: 268.855 bits (686), Expect = 1.349e-71
Identity = 136/186 (73.12%), Postives = 152/186 (81.72%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPK+Q+L+ DFFNGKE  KS NPDE          AIL+G+ + K QDLLLLDV P SLG+ETAGGVMT LIPRNTTIP KK ++FSTY DNQPGVLIQVYEGER +T+DNNLLGKFELSGIPPAPRGVPQI V FDIDANGILNVSA +K  G+  KITI NDKGRLSK+EI++MV EAE
Sbjct:  338 GGSTRIPKIQKLVSDFFNGKEPNKSINPDEAVAYGAAVQAAILTGDTSSKTQDLLLLDVAPLSLGIETAGGVMTKLIPRNTTIPTKKSEIFSTYSDNQPGVLIQVYEGERAKTKDNNLLGKFELSGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGKSQKITITNDKGRLSKEEIDRMVAEAE 523

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP73_YEAST (Heat shock protein SSA3 OS=Saccharomyces cerevisiae GN=SSA3 PE=1 SV=3)

HSP 1 Score: 268.47 bits (685), Expect = 1.762e-71
Identity = 135/186 (72.58%), Postives = 153/186 (82.26%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPK+Q+L+ DFFNGKE  +S NPDE          AIL+G+ + K QDLLLLDV P SLG+ETAGG+MT LIPRN+TIP KK + FSTY DNQPGVLIQV+EGERTRT+DNNLLGKFELSGIPPAPRGVPQI V FDIDANGILNVSA +K  G+ NKITI NDKGRLSKD+I++MV EAE
Sbjct:  336 GGSTRIPKIQKLVSDFFNGKEPNRSINPDEAVAYGAAVQAAILTGDQSTKTQDLLLLDVAPLSLGIETAGGIMTKLIPRNSTIPTKKSETFSTYADNQPGVLIQVFEGERTRTKDNNLLGKFELSGIPPAPRGVPQIDVTFDIDANGILNVSALEKGTGKSNKITITNDKGRLSKDDIDRMVSEAE 521

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP74_YEAST (Heat shock protein SSA4 OS=Saccharomyces cerevisiae GN=SSA4 PE=1 SV=3)

HSP 1 Score: 268.085 bits (684), Expect = 2.301e-71
Identity = 136/186 (73.12%), Postives = 153/186 (82.26%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ+L+ DFFNGKE  +S NPDE          AIL+G+ +   QDLLLLDV P SLG+ETAGG+MT LIPRN+TIP KK +VFSTY DNQPGVLIQV+EGERTRT+DNNLLGKFELSGIPPAPRGVPQI V FDIDANGILNVSA +K  G+ NKITI NDKGRLSK++I+KMV EAE
Sbjct:  336 GGSTRIPKVQKLVSDFFNGKEPNRSINPDEAVAYGAAVQAAILTGDQSSTTQDLLLLDVAPLSLGIETAGGIMTKLIPRNSTIPTKKSEVFSTYADNQPGVLIQVFEGERTRTKDNNLLGKFELSGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGKSNKITITNDKGRLSKEDIDKMVAEAE 521

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP76_PIG (Heat shock 70 kDa protein 6 OS=Sus scrofa GN=HSPA6 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.006e-71
Identity = 135/186 (72.58%), Postives = 153/186 (82.26%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPK+Q+LLQDFFNG+EL KS NPDE          A+L G+  EKVQDLLLLDV P SLGLETAGGVMT LI RN TIP K+ Q F+TY DNQPGVLIQVYEGER  TRDNNLLG+FELSGIPPAPRGVPQI V FDIDANGIL+V+A D++ G+ NKITI NDKGRLSK+E+E+MV+EA+
Sbjct:  340 GGSTRIPKIQKLLQDFFNGRELNKSINPDEAVAYGAAVQAAVLMGDKCEKVQDLLLLDVAPLSLGLETAGGVMTTLIQRNATIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFELSGIPPAPRGVPQIEVTFDIDANGILSVTATDRSTGRANKITITNDKGRLSKEEVERMVREAD 525

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HS71L_MACFA (Heat shock 70 kDa protein 1-like OS=Macaca fascicularis GN=HSPA1L PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.006e-71
Identity = 135/186 (72.58%), Postives = 155/186 (83.33%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ+LLQD+FNG++L KS NPDE          AIL G+ +EKVQDLLLLDV P SLGLETAGGVMT LI RN+TIP K+ Q+F+TY DNQPGVLIQVYEGER  T+DNNLLG+F+L+GIPPAPRGVPQI V FDIDANGILNV+A DK+ G+ NKITI NDKGRLSK+EIE+MV +AE
Sbjct:  340 GGSTRIPKVQRLLQDYFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSEKVQDLLLLDVAPLSLGLETAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTKDNNLLGRFDLTGIPPAPRGVPQIEVTFDIDANGILNVTAMDKSTGKANKITITNDKGRLSKEEIERMVLDAE 525

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HS71L_HUMAN (Heat shock 70 kDa protein 1-like OS=Homo sapiens GN=HSPA1L PE=1 SV=2)

HSP 1 Score: 267.7 bits (683), Expect = 3.006e-71
Identity = 135/186 (72.58%), Postives = 155/186 (83.33%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ+LLQD+FNG++L KS NPDE          AIL G+ +EKVQDLLLLDV P SLGLETAGGVMT LI RN+TIP K+ Q+F+TY DNQPGVLIQVYEGER  T+DNNLLG+F+L+GIPPAPRGVPQI V FDIDANGILNV+A DK+ G+ NKITI NDKGRLSK+EIE+MV +AE
Sbjct:  340 GGSTRIPKVQRLLQDYFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSEKVQDLLLLDVAPLSLGLETAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTKDNNLLGRFDLTGIPPAPRGVPQIEVTFDIDANGILNVTATDKSTGKVNKITITNDKGRLSKEEIERMVLDAE 525

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP7D_DROME (Heat shock 70 kDa protein cognate 4 OS=Drosophila melanogaster GN=Hsc70-4 PE=1 SV=3)

HSP 1 Score: 267.314 bits (682), Expect = 3.926e-71
Identity = 136/186 (73.12%), Postives = 155/186 (83.33%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ+LLQD FNGKEL KS NPDE          AIL G+ +++VQDLLLLDVTP SLG+ETAGGVM+VLI RNTTIP K+ Q F+TY DNQPGVLIQVYEGER  T+DNNLLGKFELSGIPPAPRGVPQI V FDIDANGILNV+A +++  ++NKITI NDKGRLSK++IE+MV EAE
Sbjct:  338 GGSTRIPKVQRLLQDLFNGKELNKSINPDEAVAYGAAVQAAILHGDKSQEVQDLLLLDVTPLSLGIETAGGVMSVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQIEVTFDIDANGILNVTALERSTNKENKITITNDKGRLSKEDIERMVNEAE 523

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP76_HUMAN (Heat shock 70 kDa protein 6 OS=Homo sapiens GN=HSPA6 PE=1 SV=2)

HSP 1 Score: 267.314 bits (682), Expect = 3.926e-71
Identity = 136/186 (73.12%), Postives = 151/186 (81.18%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ+LLQDFFNGKEL KS NPDE          A+L G+  EKVQDLLLLDV P SLGLETAGGVMT LI RN TIP K+ Q F+TY DNQPGV IQVYEGER  T+DNNLLG+FELSGIPPAPRGVPQI V FDIDANGIL+V+A D++ G+ NKITI NDKGRLSK+E+E+MV EAE
Sbjct:  340 GGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAVLMGDKCEKVQDLLLLDVAPLSLGLETAGGVMTTLIQRNATIPTKQTQTFTTYSDNQPGVFIQVYEGERAMTKDNNLLGRFELSGIPPAPRGVPQIEVTFDIDANGILSVTATDRSTGKANKITITNDKGRLSKEEVERMVHEAE 525

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP7A_DROME (Heat shock 70 kDa protein cognate 1 OS=Drosophila melanogaster GN=Hsc70-1 PE=1 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 5.127e-71
Identity = 135/186 (72.58%), Postives = 154/186 (82.80%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ+LLQDFFNGKEL KS NPDE          AIL G+ +E VQDLLLLDVTP SLG+ETAGGVMT LI RNTTIP K+ Q+F+TY DNQPGVLIQV+EGER  TRDNN LGKFELS IPPAPRGVPQ+ V FDIDANGILNV+A +K+ G++N+ITI NDKGRLSK++IE+MV +AE
Sbjct:  338 GGSTRIPKVQRLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEAVQDLLLLDVTPLSLGIETAGGVMTTLIKRNTTIPTKQTQIFTTYADNQPGVLIQVFEGERAMTRDNNSLGKFELSAIPPAPRGVPQVEVTFDIDANGILNVTALEKSTGKENRITITNDKGRLSKEDIERMVNDAE 523

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP71_CANAL (Heat shock protein SSA1 OS=Candida albicans GN=SSA1 PE=1 SV=2)

HSP 1 Score: 266.929 bits (681), Expect = 5.127e-71
Identity = 134/186 (72.04%), Postives = 152/186 (81.72%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPK+Q+L+ DFFNGKEL KS NPDE          AIL+G+ + K QD+LLLDV P SLG+ETAGG+MT LIPRN+TIP KK + FSTY DNQPGVLIQV+EGER +T+DNNLLGKFELSGIPPAPRGVPQI V FDIDANGILNVSA +K  G+  KITI NDKGRLSK+EI+KMV EAE
Sbjct:  337 GGSTRIPKIQKLVSDFFNGKELNKSINPDEAVAYGAAVQAAILTGDTSSKTQDILLLDVAPLSLGIETAGGIMTKLIPRNSTIPTKKSETFSTYADNQPGVLIQVFEGERAKTKDNNLLGKFELSGIPPAPRGVPQIEVTFDIDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDKMVSEAE 522

The following BLAST results are available for this feature:

BLAST of CB304793 vs. ExPASy Swiss-Prot

BLAST of CB304793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
HSP71_PICAN	1.349e-71	73.12	Heat shock protein 70 1 OS=Pichia angusta GN=HSA1 ...	[more]
HSP73_YEAST	1.762e-71	72.58	Heat shock protein SSA3 OS=Saccharomyces cerevisia...	[more]
HSP74_YEAST	2.301e-71	73.12	Heat shock protein SSA4 OS=Saccharomyces cerevisia...	[more]
HSP76_PIG	3.006e-71	72.58	Heat shock 70 kDa protein 6 OS=Sus scrofa GN=HSPA6...	[more]
HS71L_MACFA	3.006e-71	72.58	Heat shock 70 kDa protein 1-like OS=Macaca fascicu...	[more]
HS71L_HUMAN	3.006e-71	72.58	Heat shock 70 kDa protein 1-like OS=Homo sapiens G...	[more]
HSP7D_DROME	3.926e-71	73.12	Heat shock 70 kDa protein cognate 4 OS=Drosophila ...	[more]
HSP76_HUMAN	3.926e-71	73.12	Heat shock 70 kDa protein 6 OS=Homo sapiens GN=HSP...	[more]
HSP7A_DROME	5.127e-71	72.58	Heat shock 70 kDa protein cognate 1 OS=Drosophila ...	[more]
HSP71_CANAL	5.127e-71	72.04	Heat shock protein SSA1 OS=Candida albicans GN=SSA...	[more]

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Properties


Property Name	Value
Genbank description	FLAVEDO0002_IVaR_A03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_A03 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB304793 ID=CB304793; Name=CB304793; organism=Citrus sinensis; type=EST; length=585bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGCCTCTTGAACCATCTTCT
CAATTTCATCCTTTGAAAGTCTTCCTTTGTCATTAGCGATGGTGATCTTG
TTCTTTTGACCAGGGGTCTTGTCCTCGGCAGACACATTCAGGATACCATT
GGCATCGATGTCGAAGCACACAGTGATTTGAGGAACACCCCTAGGAGCTG
GGGGAATACCAGAGAGCTCGAATTTACCCAACAAGTTATTGTCCCTGGTT
CTTGTCCTTTCACCTTCATAAACTTGGATCAACACACCAGGTTGGTTGTC
AAAGTAAGTTGAAAAAACCTGCTCCTTCTTGGGGGGAATGGTCGTGTTCC
TTGGAATCAACACAGTCATGACACCACCAGCAGTCTCCAAACCAAGGGAG
AAAGGCGTGACATCCAATAGCAAAAGATCCTGCACCTTCTCATTACCCTC
ACCACTCAAGATAGCAGCTTGCACAGCAGCACCATAGGCAACAGCCTCAT
CGGGGTTGGTGCTCTTGCAAAGCTCCTTCCCATTAAAGAAATCTTGCAAA
AGCTGCTGGACTTTGGGAATCCTAGTAAATCCTCC