CB304793 | Citrus Genome Database

Overview


Name	CB304793
Unique Name	CB304793
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	585

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig11598	contig	Csv1_Contig11598:259..843.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP72_YEAST (Heat shock protein SSA2 OS=Saccharomyces cerevisiae GN=SSA2 PE=1 SV=3)

HSP 1 Score: 265.774 bits (678), Expect = 1.142e-70
Identity = 134/186 (72.04%), Postives = 153/186 (82.26%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ+L+ D+FNGKE  +S NPDE          AIL+G+ + K QDLLLLDV P SLG+ETAGGVMT LIPRN+TIP KK +VFSTY DNQPGVLIQV+EGER +T+DNNLLGKFELSGIPPAPRGVPQI V FD+D+NGILNVSA +K  G+ NKITI NDKGRLSK++IEKMV EAE
Sbjct:  335 GGSTRIPKVQKLVTDYFNGKEPNRSINPDEAVAYGAAVQAAILTGDESSKTQDLLLLDVAPLSLGIETAGGVMTKLIPRNSTIPTKKSEVFSTYADNQPGVLIQVFEGERAKTKDNNLLGKFELSGIPPAPRGVPQIEVTFDVDSNGILNVSAVEKGTGKSNKITITNDKGRLSKEDIEKMVAEAE 520

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP71_SCHPO (Probable heat shock protein ssa1 OS=Schizosaccharomyces pombe GN=ssa1 PE=1 SV=2)

HSP 1 Score: 265.774 bits (678), Expect = 1.142e-70
Identity = 135/186 (72.58%), Postives = 151/186 (81.18%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIP++Q+L+ DFFNGKE CKS NPDE          AIL G+ +EK QDLLLLDV P SLG+ETAGGVMT LI RNTTIP KK +VFSTY DNQPGVLIQV+EGER RT+D NLLGKFELSGIPPAPRGVPQI V FD+DANGILNVSA +K  G+  KITI NDKGRLSK+EI++MV EAE
Sbjct:  336 GGSTRIPRIQKLVSDFFNGKEPCKSINPDEAVAYGAAVQAAILVGDTSEKTQDLLLLDVAPLSLGIETAGGVMTPLIKRNTTIPTKKSEVFSTYADNQPGVLIQVFEGERARTKDCNLLGKFELSGIPPAPRGVPQIEVTFDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVSEAE 521

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP72_SCHPO (Probable heat shock protein ssa2 OS=Schizosaccharomyces pombe GN=ssa2 PE=1 SV=3)

HSP 1 Score: 265.388 bits (677), Expect = 1.492e-70
Identity = 133/186 (71.51%), Postives = 152/186 (81.72%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIP+VQ+L+ DFFNGKE CKS NPDE          A+L+G+ +EK QDLLLLDV P S+G+ETAGGVMT LI RNTTIP KK ++FSTY DNQPGVLIQV+EGER RT+D NLLGKFELSGIPPAPRGVPQI V FD+DANGILNVSA +K  G+  KITI NDKGRLSK+EI++MV EAE
Sbjct:  336 GGSTRIPRVQKLVSDFFNGKEPCKSINPDEAVAYGAAVQAAVLTGDTSEKTQDLLLLDVAPLSMGIETAGGVMTPLIKRNTTIPTKKSEIFSTYSDNQPGVLIQVFEGERARTKDCNLLGKFELSGIPPAPRGVPQIEVTFDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVAEAE 521

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP71_YEAST (Heat shock protein SSA1 OS=Saccharomyces cerevisiae GN=SSA1 PE=1 SV=4)

HSP 1 Score: 265.388 bits (677), Expect = 1.492e-70
Identity = 133/186 (71.51%), Postives = 153/186 (82.26%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ+L+ D+FNGKE  +S NPDE          AIL+G+ + K QDLLLLDV P SLG+ETAGGVMT LIPRN+TIP KK ++FSTY DNQPGVLIQV+EGER +T+DNNLLGKFELSGIPPAPRGVPQI V FD+D+NGILNVSA +K  G+ NKITI NDKGRLSK++IEKMV EAE
Sbjct:  335 GGSTRIPKVQKLVTDYFNGKEPNRSINPDEAVAYGAAVQAAILTGDESSKTQDLLLLDVAPLSLGIETAGGVMTKLIPRNSTIPTKKSEIFSTYADNQPGVLIQVFEGERAKTKDNNLLGKFELSGIPPAPRGVPQIEVTFDVDSNGILNVSAVEKGTGKSNKITITNDKGRLSKEDIEKMVAEAE 520

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP76_SAGOE (Heat shock 70 kDa protein 6 OS=Saguinus oedipus GN=HSPA6 PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 1.948e-70
Identity = 134/186 (72.04%), Postives = 152/186 (81.72%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIP+VQ+LLQDFFNGKEL KS NPDE          A+L G+  EKV+DLLLLDV P SLGLETAGGVMT LI RN TIP K+ Q F+TY DNQPGV IQVYEGER  T+DNNLLG+FELSGIPPAPRGVPQI V FDIDANGIL+V+A D++ G+ NKITI NDKGRLSK+E+E+MV+EAE
Sbjct:  340 GGSTRIPRVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAVLMGDKCEKVRDLLLLDVAPLSLGLETAGGVMTTLIQRNATIPTKQTQTFTTYSDNQPGVFIQVYEGERAMTKDNNLLGRFELSGIPPAPRGVPQIEVTFDIDANGILSVTATDRSTGKANKITITNDKGRLSKEEVERMVREAE 525

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP72_CANAL (Heat shock protein SSA2 OS=Candida albicans GN=SSA2 PE=1 SV=3)

HSP 1 Score: 265.003 bits (676), Expect = 1.948e-70
Identity = 135/186 (72.58%), Postives = 151/186 (81.18%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ+L+ D+FNGKE  +S NPDE          AILSG+ + K QDLLLLDV P SLG+ETAGG+MT LIPRN+TIP KK + FSTY DNQPGVLIQV+EGER +T+DNNLLGKFELSGIPPAPRGVPQI V FDIDANGILNVSA +K  G+  KITI NDKGRLSK+EIEKMV EAE
Sbjct:  336 GGSTRIPKVQKLVSDYFNGKEPNRSINPDEAVAYGAAVQAAILSGDTSSKTQDLLLLDVAPLSLGIETAGGIMTKLIPRNSTIPTKKSETFSTYADNQPGVLIQVFEGERAQTKDNNLLGKFELSGIPPAPRGVPQIEVTFDIDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIEKMVSEAE 521

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP71_CERAE (Heat shock 70 kDa protein 1 OS=Cercopithecus aethiops GN=HSPA1 PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 5.668e-70
Identity = 136/186 (73.12%), Postives = 153/186 (82.26%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ+LLQDFFNG++L KS NPDE          AIL G+ +E VQDLLLLDV P SLGLET GGVMT LI RN+TIP K+ Q+F+TY DNQPGVLIQVYEGER  T+DNNLLG+FELSGIPPAP GVPQI V F+IDANGILNV+A DK+ G+ NKITI NDKGRLSK+EIE+MVQEAE
Sbjct:  336 GGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSENVQDLLLLDVAPLSLGLETPGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTKDNNLLGRFELSGIPPAP-GVPQIEVTFEIDANGILNVTATDKSTGKANKITITNDKGRLSKEEIERMVQEAE 520

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP70_HYDMA (Heat shock 70 kDa protein OS=Hydra magnipapillata GN=HSP70.1 PE=3 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 5.668e-70
Identity = 136/186 (73.12%), Postives = 152/186 (81.72%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ LLQ+FFNGKEL KS NPDE          AIL+G+ +E VQDLLLLDV P SLG+ETAGGV T LI RNTT+P K  QVF+TY DNQPGVLIQV+EGER+ T  NNLLGKFELSGIP APRGVPQI V FD+DANGILNVSA DK+ G++NKITI NDKGRLSK++IE+MVQEAE
Sbjct:  345 GGSTRIPKVQSLLQEFFNGKELNKSINPDEAVAYGAAVQAAILAGDKHEAVQDLLLLDVAPLSLGIETAGGVFTPLIKRNTTVPTKYSQVFTTYSDNQPGVLIQVFEGERSMTAHNNLLGKFELSGIPLAPRGVPQIEVTFDVDANGILNVSALDKSTGKENKITITNDKGRLSKEDIERMVQEAE 530

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP72_USTMA (Heat shock 70 kDa protein 2 OS=Ustilago maydis GN=UMS2 PE=3 SV=2)

HSP 1 Score: 261.536 bits (667), Expect = 2.154e-69
Identity = 131/186 (70.43%), Postives = 151/186 (81.18%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ+LL DFFNG+EL KS NPDE          AILSG+ +EK QDLLLLDV P S+G+ETAGGV T LI RNTT+P KK ++FSTY DNQPGVLIQV+EGER RT+DNNLLGKFELSGIPPAPRGVPQI V FD+DAN ILNVSA +K  G+  KITI NDKGRLS ++IE+M+++AE
Sbjct:  336 GGSTRIPKVQKLLTDFFNGRELNKSINPDEAVAYGAAVQAAILSGDTSEKTQDLLLLDVAPLSMGIETAGGVFTPLIKRNTTVPTKKSEIFSTYADNQPGVLIQVFEGERARTKDNNLLGKFELSGIPPAPRGVPQIEVTFDVDANAILNVSAAEKGTGKSEKITIRNDKGRLSSEQIEEMLKQAE 521

[Close]

BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP70_BLAEM (Heat shock 70 kDa protein OS=Blastocladiella emersonii GN=HSP70 PE=3 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 6.267e-69
Identity = 133/186 (71.51%), Postives = 150/186 (80.65%), Query Frame = -1

Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIP++Q+L+ DFFNGKE  KS NPDE          AIL+G+ +EKVQDLLLLDV P SLG+ETAGGVMT LI RNTTIP KK + FSTY DNQPGVLIQVYEGER RT+DNNLLGKFEL+GIPPAP  VPQI V FD+ A+GILNVSA DK+  + NKITI NDKGRLSK+EIE+MV EAE
Sbjct:  341 GGSTRIPRIQKLVSDFFNGKEPNKSINPDEAVAYGAAVQAAILAGDQSEKVQDLLLLDVAPLSLGIETAGGVMTPLIKRNTTIPAKKSETFSTYADNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPPRVPQIEVSFDVGADGILNVSAVDKSTNRSNKITITNDKGRLSKEEIERMVAEAE 526

The following BLAST results are available for this feature:

BLAST of CB304793 vs. ExPASy Swiss-Prot

BLAST of CB304793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
HSP72_YEAST	1.142e-70	72.04	Heat shock protein SSA2 OS=Saccharomyces cerevisia...	[more]
HSP71_SCHPO	1.142e-70	72.58	Probable heat shock protein ssa1 OS=Schizosaccharo...	[more]
HSP72_SCHPO	1.492e-70	71.51	Probable heat shock protein ssa2 OS=Schizosaccharo...	[more]
HSP71_YEAST	1.492e-70	71.51	Heat shock protein SSA1 OS=Saccharomyces cerevisia...	[more]
HSP76_SAGOE	1.948e-70	72.04	Heat shock 70 kDa protein 6 OS=Saguinus oedipus GN...	[more]
HSP72_CANAL	1.948e-70	72.58	Heat shock protein SSA2 OS=Candida albicans GN=SSA...	[more]
HSP71_CERAE	5.668e-70	73.12	Heat shock 70 kDa protein 1 OS=Cercopithecus aethi...	[more]
HSP70_HYDMA	5.668e-70	73.12	Heat shock 70 kDa protein OS=Hydra magnipapillata ...	[more]
HSP72_USTMA	2.154e-69	70.43	Heat shock 70 kDa protein 2 OS=Ustilago maydis GN=...	[more]
HSP70_BLAEM	6.267e-69	71.51	Heat shock 70 kDa protein OS=Blastocladiella emers...	[more]

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Properties


Property Name	Value
Genbank description	FLAVEDO0002_IVaR_A03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_A03 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB304793 ID=CB304793; Name=CB304793; organism=Citrus sinensis; type=EST; length=585bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGCCTCTTGAACCATCTTCT
CAATTTCATCCTTTGAAAGTCTTCCTTTGTCATTAGCGATGGTGATCTTG
TTCTTTTGACCAGGGGTCTTGTCCTCGGCAGACACATTCAGGATACCATT
GGCATCGATGTCGAAGCACACAGTGATTTGAGGAACACCCCTAGGAGCTG
GGGGAATACCAGAGAGCTCGAATTTACCCAACAAGTTATTGTCCCTGGTT
CTTGTCCTTTCACCTTCATAAACTTGGATCAACACACCAGGTTGGTTGTC
AAAGTAAGTTGAAAAAACCTGCTCCTTCTTGGGGGGAATGGTCGTGTTCC
TTGGAATCAACACAGTCATGACACCACCAGCAGTCTCCAAACCAAGGGAG
AAAGGCGTGACATCCAATAGCAAAAGATCCTGCACCTTCTCATTACCCTC
ACCACTCAAGATAGCAGCTTGCACAGCAGCACCATAGGCAACAGCCTCAT
CGGGGTTGGTGCTCTTGCAAAGCTCCTTCCCATTAAAGAAATCTTGCAAA
AGCTGCTGGACTTTGGGAATCCTAGTAAATCCTCC