CB304800

Overview
NameCB304800
Unique NameCB304800
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304800 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 2.995e-13
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = -3
Query:  394 TAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 594
            TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM    +   A    V+I+  PV Q  G C
Sbjct:  138 TAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGC 204          
BLAST of CB304800 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 2.995e-13
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = -3
Query:  394 TAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 594
            TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM    +   A    V+I+  PV Q  G C
Sbjct:  138 TAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGC 204          
BLAST of CB304800 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.912e-13
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = -3
Query:  394 TAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPV-AQKSGCC 594
            TAK +AD++GIPF+ETSAK++TNVEQAFM MAA IK+RM    + ++++P        PV A K GCC
Sbjct:  138 TAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEIKNRMGPITAASDSKPSVKINSSTPVSANKGGCC 205          
BLAST of CB304800 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.487e-12
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = -3
Query:  394 TAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 594
            TAK FAD +GIPF+ETSAK++TNVEQAFM MAA IK RM    +   +    V I+  PV    G C
Sbjct:  135 TAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATSGGSEKSNVNIQSTPVKSSGGGC 201          
BLAST of CB304800 vs. ExPASy Swiss-Prot
Match: RAB1B_PIG (Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.487e-12
Identity = 38/67 (56.72%), Postives = 45/67 (67.16%), Query Frame = -3
Query:  394 TAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 594
            TAK FAD +GIPF+ETSAK++TNVEQAFM MAA IK RM    +    R P ++I   PV Q  G C
Sbjct:  135 TAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPVKQAGGGC 200          
BLAST of CB304800 vs. ExPASy Swiss-Prot
Match: RAB1B_BOVIN (Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.487e-12
Identity = 38/67 (56.72%), Postives = 45/67 (67.16%), Query Frame = -3
Query:  394 TAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 594
            TAK FAD +GIPF+ETSAK++TNVEQAFM MAA IK RM    +    R P ++I   PV Q  G C
Sbjct:  135 TAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPVKQAGGGC 200          
BLAST of CB304800 vs. ExPASy Swiss-Prot
Match: RAB1B_RAT (Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.536e-12
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = -3
Query:  394 TAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 594
            TAK FAD +G+PF+ETSAK++TNVEQAFM MAA IK RM    +    R P ++I   PV   SG C
Sbjct:  135 TAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPVKSASGGC 200          
BLAST of CB304800 vs. ExPASy Swiss-Prot
Match: RAB1B_MOUSE (Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.312e-12
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = -3
Query:  394 TAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 594
            TAK FAD +G+PF+ETSAK++TNVEQAFM MAA IK RM    +    R P ++I   PV   SG C
Sbjct:  135 TAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPVKPASGGC 200          
BLAST of CB304800 vs. ExPASy Swiss-Prot
Match: RAB1B_PONAB (Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.378e-12
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = -3
Query:  394 TAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 594
            TAK FAD +GIPF+ETSAK++TNVEQAFM MAA IK RM    +    R P ++I   PV    G C
Sbjct:  135 TAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPVKPAGGGC 200          
BLAST of CB304800 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.378e-12
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = -3
Query:  394 TAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 594
            TAK FAD +GIPF+ETSAK++TNVEQAFM MAA IK RM    +    R P ++I   PV    G C
Sbjct:  135 TAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPVKPAGGGC 200          
The following BLAST results are available for this feature:
BLAST of CB304800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RAB1A_HUMAN2.995e-1355.22Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]
RAB1A_CANFA2.995e-1355.22Ras-related protein Rab-1A OS=Canis familiaris GN=... [more]
RAB1A_LYMST3.912e-1354.41Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
RAB1_DISOM1.487e-1253.73Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]
RAB1B_PIG1.487e-1256.72Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B ... [more]
RAB1B_BOVIN1.487e-1256.72Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B ... [more]
RAB1B_RAT2.536e-1255.22Ras-related protein Rab-1B OS=Rattus norvegicus GN... [more]
RAB1B_MOUSE3.312e-1255.22Ras-related protein Rab-1B OS=Mus musculus GN=Rab1... [more]
RAB1B_PONAB7.378e-1255.22Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1... [more]
RAB1B_MACFA7.378e-1255.22Ras-related protein Rab-1B OS=Macaca fascicularis ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_B01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_B01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304800 ID=CB304800; Name=CB304800; organism=Citrus sinensis; type=EST; length=599bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGGAAAAAACAAATTCCAA
TTAAATACGCTCTCTATACCAAACAATGTAGCATACAATTAAACAAATTA
TTGGTTCAAGTCTTCAATAACCGCTGTCAAAACGGACAATAGTAGTGCTA
TTGACAGTATTCAAACATGCTATTAAGGCCAATTCACAATAAAGAATAGG
ACAGAAAGAAAAATACTAACATCAAATTAGCATTTCTACTTTGTACAGGC
CTTTTCATAAACCACAAAGGGAGAACAATTTTTGATGAGGTTGGTCCAAA
TGACATAGCTTTCAACTGAAAAGATGAAAAGCATTACACACCATTAGGTC
CAGCAAACCCACGACAGATATATTACAATGATACTTAAGTAAAGCAGCAG
CCACTCTTCTGTGCAACAGGCTGCCCTTTGATCTGTACAGTTGGAGGCCT
TGCATTGTTCATGGATGGTTGACTTGCCATTCTATCCTTGATTGAAGCAG
CCATGGCCATGAATGCCTGTTCCACGTTGGTAGAATCTTTTGCACTAGTT
TCCATGAAAGGTATTCCAATTTCATCTGCAAATGCCTTGGCTGTTTCAT
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