CB304800

Overview
NameCB304800
Unique NameCB304800
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304800 vs. ExPASy Swiss-Prot
Match: RAB1B_HUMAN (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.378e-12
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = -3
Query:  394 TAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 594
            TAK FAD +GIPF+ETSAK++TNVEQAFM MAA IK RM    +    R P ++I   PV    G C
Sbjct:  135 TAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPVKPAGGGC 200          
BLAST of CB304800 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.258e-11
Identity = 36/73 (49.32%), Postives = 52/73 (71.23%), Query Frame = -3
Query:  388 AKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI-KDRMASQPSMNNARPPTVQIKGQPVAQK----SGCCFT 591
            A+A+A E+GIPF+ETSAK+S NVE+AF+AM+A+I K +  SQ ++       VQ+KG+P+ Q+    S CC T
Sbjct:  136 AQAYAQEVGIPFLETSAKESINVEEAFLAMSAAIKKSKAGSQAALERKPSNVVQMKGRPIQQEQQKSSRCCST 208          
BLAST of CB304800 vs. ExPASy Swiss-Prot
Match: YPT1_NEUCR (GTP-binding protein ypt1 OS=Neurospora crassa GN=ypt-1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.147e-11
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = -3
Query:  394 AKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKS--GCC 591
            AK FAD +GIPF+ETSAK+++NVEQAF+ MA  IK+RM S  + NN +       G  V+  S  GCC
Sbjct:  136 AKEFADSLGIPFLETSAKNASNVEQAFLTMARQIKERMGSSIATNNTKASVNVSPGHGVSNNSSGGCC 203          
BLAST of CB304800 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.147e-11
Identity = 36/67 (53.73%), Postives = 44/67 (65.67%), Query Frame = -3
Query:  394 TAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 594
            TAK FAD +GIPF+ETSAK++TNVEQAFM MAA IK +M    +    R P ++I   PV    G C
Sbjct:  135 TAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKQMGPGAASGGER-PNLKIDSTPVKPAGGGC 200          
The following BLAST results are available for this feature:
BLAST of CB304800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RAB1B_HUMAN7.378e-1255.22Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1... [more]
YPTM1_MAIZE1.258e-1149.32GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
YPT1_NEUCR2.147e-1151.47GTP-binding protein ypt1 OS=Neurospora crassa GN=y... [more]
RAB1C_HUMAN2.147e-1153.73Putative Ras-related protein Rab-1C OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_B01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_B01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304800 ID=CB304800; Name=CB304800; organism=Citrus sinensis; type=EST; length=599bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGGAAAAAACAAATTCCAA
TTAAATACGCTCTCTATACCAAACAATGTAGCATACAATTAAACAAATTA
TTGGTTCAAGTCTTCAATAACCGCTGTCAAAACGGACAATAGTAGTGCTA
TTGACAGTATTCAAACATGCTATTAAGGCCAATTCACAATAAAGAATAGG
ACAGAAAGAAAAATACTAACATCAAATTAGCATTTCTACTTTGTACAGGC
CTTTTCATAAACCACAAAGGGAGAACAATTTTTGATGAGGTTGGTCCAAA
TGACATAGCTTTCAACTGAAAAGATGAAAAGCATTACACACCATTAGGTC
CAGCAAACCCACGACAGATATATTACAATGATACTTAAGTAAAGCAGCAG
CCACTCTTCTGTGCAACAGGCTGCCCTTTGATCTGTACAGTTGGAGGCCT
TGCATTGTTCATGGATGGTTGACTTGCCATTCTATCCTTGATTGAAGCAG
CCATGGCCATGAATGCCTGTTCCACGTTGGTAGAATCTTTTGCACTAGTT
TCCATGAAAGGTATTCCAATTTCATCTGCAAATGCCTTGGCTGTTTCAT
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