CB304801

Overview
NameCB304801
Unique NameCB304801
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig738 contig Csv1_Contig738:87..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACADS_PONAB (Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Pongo abelii GN=ACADS PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.608e-32
Identity = 76/174 (43.68%), Postives = 104/174 (59.77%), Query Frame = -3
Query:  176 GSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLK 697
            GS T  L+FE+C +P +++LG+ G G  + M  LD+ R+ +A+  LGI Q  +D  + Y   R  FG PL + Q IQ K ADM  AL+S+R   +  A   DN K   K+ A   L A+E AT ++ QAIQ LGG GYV E    R  RDA++ EI  GTSEI+R++I   LL+
Sbjct:  235 GSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMGRIGIASQALGIAQTALDCAVNYAENRMAFGAPLTKLQVIQFKLADMALALESARLLTWRAAMLKDNKKPFIKEAAMAKLAASEAATAISHQAIQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLLR 408          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACADS_HUMAN (Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADS PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.608e-32
Identity = 76/174 (43.68%), Postives = 104/174 (59.77%), Query Frame = -3
Query:  176 GSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLK 697
            GS T  L+FE+C +P +++LG+ G G  + M  LD+ R+ +A+  LGI Q  +D  + Y   R  FG PL + Q IQ K ADM  AL+S+R   +  A   DN K   K+ A   L A+E AT ++ QAIQ LGG GYV E    R  RDA++ EI  GTSEI+R++I   LL+
Sbjct:  235 GSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMGRIGIASQALGIAQTALDCAVNYAENRMAFGAPLTKLQVIQFKLADMALALESARLLTWRAAMLKDNKKPFIKEAAMAKLAASEAATAISHQAIQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLLR 408          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACADS_MOUSE (Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acads PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.468e-31
Identity = 77/173 (44.51%), Postives = 103/173 (59.54%), Query Frame = -3
Query:  176 SDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLK 694
            S T  L+FE+C +P EN+LG+ G G  + M  LD+ R+ +A+  LGI QA +D  + Y   R  FG PL + Q IQ K ADM  AL+S+R   +  A   DN K   K+ A   L A+E AT ++ QAIQ LG  GYV E    R  RDA++ EI  GTSEI+R++I   LL+
Sbjct:  236 SSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQASLDCAVKYAENRNAFGAPLTKLQNIQFKLADMALALESARLLTWRAAMLKDNKKPFTKESAMRKLAASEAATAISHQAIQILGSMGYVTEMPAERYYRDARITEIYEGTSEIQRLVIAGHLLR 408          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACDB_BACSU (Acyl-CoA dehydrogenase OS=Bacillus subtilis GN=mmgC PE=2 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 4.272e-31
Identity = 73/173 (42.20%), Postives = 109/173 (63.01%), Query Frame = -3
Query:  179 GSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLL 697
            GS+T EL+F+N  VP  N+LG+EG G ++ M+ L++ R+ +AA  LGI +A ++  + Y +QR QFGRP+   Q I  K ADM T  +++R  VY  A   + G    K+ +     A++ A + AL A+Q  GG GY+ +Y   RLLRDAK+ +I  GT+EI+R+II + LL
Sbjct:  204 GSNTTELIFDNAEVPEANLLGKEGDGFHIAMANLNVGRIGIAAQALGIAEAALEHAVDYAKQRVQFGRPIAANQGISFKLADMATRAEAARHLVYHAADLHNRGLNCGKEASMAKQFASDAAVKAALDAVQIYGGYGYMKDYPVERLLRDAKVTQIYEGTNEIQRLIISKYLL 376          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACADS_PIG (Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Sus scrofa GN=ACADS PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.287e-31
Identity = 80/175 (45.71%), Postives = 105/175 (60.00%), Query Frame = -3
Query:  176 SDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDP--KDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLK 694
            S T  L+FE+C +P EN+LG+ G G  + M  LD+ R+ +A+  LGI QA +D  + Y   R  FG PL + Q IQ K ADM  AL+S+R   +  A   DN K +P  K+ A   L A+E AT +  QAIQ LGG GYV E    R  RDA++ EI  GTSEI+R++I   LLK
Sbjct:  236 SSTANLIFEDCRIPKENLLGEPGMGFKIAMKTLDMGRIGIASKALGISQAALDCAVNYAENRRAFGVPLTKLQGIQFKLADMALALESARLLTWRAAMLKDN-KKNPFIKEPAMAKLAASEAATAITHQAIQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLLK 409          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACADS_BOVIN (Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACADS PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.052e-29
Identity = 74/173 (42.77%), Postives = 101/173 (58.38%), Query Frame = -3
Query:  176 SDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLK 694
            S T  L+FE+  +P +++LG+ G G  + M  LD  R+ +A+  LGI QA +D  + Y   R  FG PL + Q IQ K ADM  AL+S+R   +  A   DN K   K+ A   L A+E AT +  QA+Q LGG GYV E    R  RDA++ EI  GTSEI+R+++   LLK
Sbjct:  236 SSTANLIFEDRRIPKDSLLGEPGLGFKIAMQTLDTGRIGIASQALGIAQAALDCAVTYAENRSAFGAPLTKLQAIQFKLADMALALESARLLTWRAAMLKDNKKPFTKEAAMAKLAASEAATAITHQAMQILGGMGYVKEMPAERHYRDARITEIYEGTSEIQRLVVAGHLLK 408          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACDS_MEGEL (Acyl-CoA dehydrogenase, short-chain specific OS=Megasphaera elsdenii PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.344e-29
Identity = 73/173 (42.20%), Postives = 104/173 (60.12%), Query Frame = -3
Query:  176 SDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLK 694
            S T ELVF++  VP EN+LG+EGKG  + M  LD  R+ +AA  LGI +A +   + Y +QR QFG+PL +FQ I  K ADM   ++++R+ VY  A     GK    D A     A++ A +V  +A+Q  GG GY  EY   R +RDAK+ +I  GT+E++ M+ G  LL+
Sbjct:  211 SQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQIEAARNLVYKAACKKQEGKPFTVDAAIAKRVASDVAMRVTTEAVQIFGGYGYSEEYPVARHMRDAKITQIYEGTNEVQLMVTGGALLR 383          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACADM_CAEEL (Probable medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=T08G2.3 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.222e-29
Identity = 74/173 (42.77%), Postives = 99/173 (57.23%), Query Frame = -3
Query:  179 SDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILC-AAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLL 694
            SDT  + FE+  VP ENVLG  G G  V M   D+ R  +AAG LG+   C+D    Y  +R+ FG  +   Q +Q   ADM   L+ +R   Y  A D DN KV     A +  C AA+ A Q A  A+Q  GGNG+ +EY   +L+RDAK+Y+I  GTS+I+R++I R LL
Sbjct:  235 SDTRVITFEDVRVPAENVLGAPGAGFKVAMEAFDMTRPGVAAGALGLSWRCLDESAKYALERKAFGTVIANHQAVQFMLADMAVNLELARLITYKSANDVDN-KVRSSYNASIAKCFAADTANQAATNAVQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRIVISRMLL 406          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACDS_CLOAB (Acyl-CoA dehydrogenase, short-chain specific OS=Clostridium acetobutylicum GN=bcd PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.820e-29
Identity = 71/173 (41.04%), Postives = 102/173 (58.96%), Query Frame = -3
Query:  176 SDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLK 694
            S T ELVFE+  VP EN++G+EGKG  + M  LD  R+ +AA  LGI +   +    Y+++R+QFGR L +FQ +    ADM  A++S+R  VY  A     G     D A   L AA  A  V  +A+Q  GG GY  +Y   R++RDAK+ EI  GTSE+++++I  K+ +
Sbjct:  207 SSTTELVFEDMIVPVENMIGKEGKGFPIAMKTLDGGRIGIAAQALGIAEGAFNEARAYMKERKQFGRSLDKFQGLAWMMADMDVAIESARYLVYKAAYLKQAGLPYTVDAARAKLHAANVAMDVTTKAVQLFGGYGYTKDYPVERMMRDAKITEIYEGTSEVQKLVISGKIFR 379          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACDP_MYCTU (Probable acyl-CoA dehydrogenase fadE25 OS=Mycobacterium tuberculosis GN=fadE25 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.680e-27
Identity = 62/175 (35.43%), Postives = 100/175 (57.14%), Query Frame = -3
Query:  176 GSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILC-AAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLK 697
            GS T EL FENC +P + ++G+ G G    ++ LD  R  + A  +GI Q  +D  + Y + R+QFG  +  FQ +Q   ADM   ++++R  VYS A   + G+ D    +    C A++ A +V   A+Q  GG GY  ++   R +RDAK+ +I  GT++I+R+++ R LL+
Sbjct:  215 GSPTTELYFENCRIPGDRIIGEPGTGFKTALATLDHTRPTIGAQAVGIAQGALDAAIAYTKDRKQFGESISTFQAVQFMLADMAMKVEAARLMVYSAAARAERGEPDLGFISAASKCFASDVAMEVTTDAVQLFGGAGYTTDFPVERFMRDAKITQIYEGTNQIQRVVMSRALLR 389          
The following BLAST results are available for this feature:
BLAST of CB304801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
ACADS_PONAB8.608e-3243.68Short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
ACADS_HUMAN8.608e-3243.68Short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
ACADS_MOUSE1.468e-3144.51Short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
ACDB_BACSU4.272e-3142.20Acyl-CoA dehydrogenase OS=Bacillus subtilis GN=mmg... [more]
ACADS_PIG7.287e-3145.71Short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
ACADS_BOVIN1.052e-2942.77Short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
ACDS_MEGEL2.344e-2942.20Acyl-CoA dehydrogenase, short-chain specific OS=Me... [more]
ACADM_CAEEL5.222e-2942.77Probable medium-chain specific acyl-CoA dehydrogen... [more]
ACDS_CLOAB6.820e-2941.04Acyl-CoA dehydrogenase, short-chain specific OS=Cl... [more]
ACDP_MYCTU1.680e-2735.43Probable acyl-CoA dehydrogenase fadE25 OS=Mycobact... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_B03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_B03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304801 ID=CB304801; Name=CB304801; organism=Citrus sinensis; type=EST; length=699bp
TTTTNNNTTTTTTTTTTTTTTTTTTTCTTTGTAAAGTTGATAAACCGGTA
AATTTTATAATTCAGCACTTGTTCGTGCGTTCCCTGTTTCAAACCAAGGG
AATTTCACAATTTAAAATGAATATAAAAAGTATGTGCAAGTGAGAATCCT
ACAAAACGGCCATCTCTCACTGTTGCTTTAAAAGCTTGCGACCTATAATC
ATTCTTCTTATCTCGCTGGTGCCTGCCCCAATTTCATATAGTTTGGCATC
TCGAAGGAGACGTCCAGTGGCATACTCATTTACATAACCATTACCACCTA
AACATTGAATAGCCTGCAAAGCAACTTGGGTGGCTCTTTCAGCTGCACAA
AGTATCACTCCAGCACAGTCCTTAGGGTCAACTTTTCCGTTGTCACAGTC
CCTGGCAACAGAATAAACATAGGACCTTGATGATTGTAAAGCAGTATACA
TGTCAGCAGTTTTTCCCTGGATAAACTGAAATTCCCCAAGTGGACGGCCA
AATTGCTCCCGCTGACGAACATAAGGAAGAACAACATCAATGCATGCCTG
CATAATACCCAGGGGCCCAGCTGCCAAAACAAGCCTCTCCAAATCTAGTC
CTGACATCATAACATAAACTCCTTTTCCTTCCTGCCCAAGAACATTCTCA
TTTGGAACAAAGCAATTCTCAAACACAAGCTCACATGTATCACTTCCTC
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