CB304801

Overview
NameCB304801
Unique NameCB304801
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig738 contig Csv1_Contig738:87..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACADV_MOUSE (Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acadvl PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.334e-16
Identity = 57/169 (33.73%), Postives = 91/169 (53.85%), Query Frame = -3
Query:  194 SDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGV--ILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMII 694
            S+T E+ F+   VP+ENVLG+ G G  V ++ L+  R  +AA   G M++ I   + +   R QFG  +  F  IQ K A M      + S  Y ++ + D G  D +  A +  I C +E A +VA + IQ +GG G++ E    R+LRD +++ I  G ++I R+ +
Sbjct:  306 SNTSEVYFDGVKVPSENVLGEVGDGFKVAVNILNNGRFGMAATLAGTMKSLIAKAVDHATNRTQFGDKIHNFGVIQEKLARMAILQYVTESMAYMLSANMDQGFKDFQIEAAISKIFC-SEAAWKVADECIQIMGGMGFMKEPGVERVLRDIRIFRIFEGANDILRLFV 473          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACADV_RAT (Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Acadvl PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.742e-16
Identity = 56/168 (33.33%), Postives = 89/168 (52.98%), Query Frame = -3
Query:  194 SDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVI-LCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMII 694
            S+T E+ F+   VP ENVLG+ G G  V ++ L+  R  +AA   G M+A I   + +   R QFG  +  F  IQ K A M      + S  Y ++ + D G  D +  A +  +  +E A +V  + IQ +GG G++ E    R+LRD +++ I  GT++I R+ +
Sbjct:  305 SNTSEVYFDGVKVPAENVLGEVGDGFKVAVNILNNGRFGMAATLAGTMKAIIAKAVDHATNRTQFGDKIHNFGVIQEKLARMAILQYVTESMAYMLSANMDQGFKDFQIEAAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDIRIFRIFEGTNDILRLFV 472          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: GCDH_CAEEL (Probable glutaryl-CoA dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=F54D5.7 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.070e-16
Identity = 55/171 (32.16%), Postives = 87/171 (50.88%), Query Frame = -3
Query:  182 SDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKL 694
            S T ++  ++  VP EN+L    +G+      L+  RL +A G LG  + C  +   Y   R+QFGRPL + Q +Q K ADM T +         V+R  D GKV  +  + +   +  +A +VA +A   LGGNG V+EY   R + + +      GT ++  +I+GR +
Sbjct:  233 SITGQIAMDDVPVPEENLL-PNAEGLQGPFGCLNNARLGIAWGALGAAEECFHLARQYTLDRQQFGRPLAQNQLMQLKMADMLTEISLGLQGCLRVSRLKDEGKVQSEQISIIKRNSCGKALEVARKARDMLGGNGIVDEYHIMRHMVNLETVNTYEGTHDVHALILGRAI 402          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: BBSG_THAAR ((R)-benzylsuccinyl-CoA dehydrogenase OS=Thauera aromatica GN=bbsG PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.057e-13
Identity = 53/171 (30.99%), Postives = 83/171 (48.54%), Query Frame = -3
Query:  179 TCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPK-DCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLL 688
            T  +  +N  V +E VLG+ G     + +   + R+ LAA   G+ +  I +++     R+ FG  L + Q +Q   AD    L+  R  +Y  A   D G  D + + A + + A E  T+VA +AIQ  GG G   E     + R  +++ +  G SEI RM I +KLL
Sbjct:  224 TWSVYLDNVRVGDEAVLGEVGDAFIPLQNRFGVRRIELAAHCTGMAERLIQMMIDQANLRKTFGVALADRQTVQNWIADSTIELEQVRLQLYFTAWKSDQGHKDLRLEAASLKIAATEMLTRVADRAIQLHGGLGLSREMGIEYVARMVRIWRVVEGASEIHRMSIAKKLL 394          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: MBTN_MYCSS (Acyl-[acyl-carrier-protein] dehydrogenase mbtN OS=Mycobacterium sp. (strain MCS) GN=mbtN PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 47/152 (30.92%), Postives = 78/152 (51.32%), Query Frame = -3
Query:  209 FVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYV-NEYATGRLLRDAKLYEIGAGTSEI 661
            +VP + ++ + G G+  +  GL  ERL +A    G  Q  I + L  + +R QFG  L E Q ++ + AD+   +   R   Y++A     G++D +  A + + AA    +V  + +   GG+GY+ +E   GR  RD KL  +G GT E+
Sbjct:  214 WVPGDALIARPGTGLAAISWGLAHERLSIAGQVAGASQRVIGITLARMMKRRQFGHTLYEHQALRMRMADLQARVDMLR---YALAGIAAGGRLDLRAAAAIKVTAARLGEEVLSECMHIFGGSGYLTDETPLGRWWRDMKLARVGGGTDEV 362          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: GCDH_DICDI (Glutaryl-CoA dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=gcdh PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 53/171 (30.99%), Postives = 78/171 (45.61%), Query Frame = -3
Query:  182 SDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKL 694
            S T  +V E+  VP    +  E KG+    S L+  R  +  G LG  + C      Y   R+QFG+PL   Q  Q K ADM T +       Y V R  D GK  P+  + +   +  ++  +A Q+   LGGNG  +EY   R   + +      GT +I  +I+GR +
Sbjct:  245 SITGMIVMEDVEVP-PTAMFPEVKGLRGPFSCLNKARYGIGWGSLGAAEFCYSTARQYGLDRKQFGKPLAANQLYQKKLADMATEISLGLQACYQVGRLIDAGKATPERISLIKRNSCGKSLDIARQSRDMLGGNGIADEYHVIRHAANLETVNTYEGTHDIHALILGRAI 414          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: GCDH_PIG (Glutaryl-CoA dehydrogenase, mitochondrial (Fragment) OS=Sus scrofa GN=GCDH PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 53/171 (30.99%), Postives = 79/171 (46.20%), Query Frame = -3
Query:  182 SDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKL 694
            S T  ++ ++  VP ENVL  +   + V    L+  R  ++ G LG  + C+     Y   R QFG PL + Q IQ K ADM T +         + R  D  KV P+  + +      +A  +A QA   LGGNG  +EY   R   + +      GT +I  +I+GR +
Sbjct:  229 SATGMIIMDDVEVPEENVL-PKASSLAVPFGCLNNARYGISWGVLGAAEFCLHTARQYTLDRIQFGVPLAKNQLIQRKLADMLTEITLGLHACLQLGRLKDQDKVTPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAI 398          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: MBTN_MYCPA (Acyl-[acyl-carrier-protein] dehydrogenase mbtN OS=Mycobacterium paratuberculosis GN=mbtN PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 47/152 (30.92%), Postives = 75/152 (49.34%), Query Frame = -3
Query:  209 FVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGY-VNEYATGRLLRDAKLYEIGAGTSEI 661
            +VP + ++ + G G+  +  GL  ER+ +A       Q  I + L  +  R QFGR L E Q ++ + AD+   +   +  +  +A     G++D +  AGV + AA    +V  + +   GG GY V E   GR  RD KL  +G GT E+
Sbjct:  215 WVPADALVARAGTGLAAISWGLAHERMSIAGQIAASCQRAIGITLARMMTRRQFGRTLFEHQALRLRMADLQARVDLLQHGLNGIAA---QGRLDLRAAAGVKVTAARLGEEVMSECMHIFGGAGYLVEETPLGRWWRDMKLARVGGGTDEV 363          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: MBTN_MYCTU (Acyl-[acyl-carrier-protein] dehydrogenase mbtN OS=Mycobacterium tuberculosis GN=mbtN PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 44/152 (28.95%), Postives = 77/152 (50.66%), Query Frame = -3
Query:  209 FVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGY-VNEYATGRLLRDAKLYEIGAGTSEI 661
            +VP + ++ + G G+  +  GL  ER+ +A       Q  I + L  +  R QFG+ L E Q ++ + AD+   +   R  ++ +A   + G+++ +  A V + AA    +V  + +   GG GY V+E   G+  RD KL  +G GT E+
Sbjct:  213 WVPADALVARAGTGLAAISWGLAHERMSIAGQIAASCQRAIGITLARMMSRRQFGQTLFEHQALRLRMADLQARVDLLRYALHGIA---EQGRLELRTAAAVKVTAARLGEEVISECMHIFGGAGYLVDETTLGKWWRDMKLARVGGGTDEV 361          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: MBTN_MYCBO (Acyl-[acyl-carrier-protein] dehydrogenase mbtN OS=Mycobacterium bovis GN=mbtN PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 44/152 (28.95%), Postives = 77/152 (50.66%), Query Frame = -3
Query:  209 FVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGY-VNEYATGRLLRDAKLYEIGAGTSEI 661
            +VP + ++ + G G+  +  GL  ER+ +A       Q  I + L  +  R QFG+ L E Q ++ + AD+   +   R  ++ +A   + G+++ +  A V + AA    +V  + +   GG GY V+E   G+  RD KL  +G GT E+
Sbjct:  213 WVPADALVARAGTGLAAISWGLAHERMSIAGQIAASCQRAIGITLARMMSRRQFGQTLFEHQALRLRMADLQARVDLLRYALHGIA---EQGRLELRTAAAVKVTAARLGEEVISECMHIFGGAGYLVDETTLGKWWRDMKLARVGGGTDEV 361          
The following BLAST results are available for this feature:
BLAST of CB304801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
ACADV_MOUSE1.334e-1633.73Very long-chain specific acyl-CoA dehydrogenase, m... [more]
ACADV_RAT1.742e-1633.33Very long-chain specific acyl-CoA dehydrogenase, m... [more]
GCDH_CAEEL5.070e-1632.16Probable glutaryl-CoA dehydrogenase, mitochondrial... [more]
BBSG_THAAR1.057e-1330.99(R)-benzylsuccinyl-CoA dehydrogenase OS=Thauera ar... [more]
MBTN_MYCSS2.355e-1330.92Acyl-[acyl-carrier-protein] dehydrogenase mbtN OS=... [more]
GCDH_DICDI4.017e-1330.99Glutaryl-CoA dehydrogenase, mitochondrial OS=Dicty... [more]
GCDH_PIG1.994e-1230.99Glutaryl-CoA dehydrogenase, mitochondrial (Fragmen... [more]
MBTN_MYCPA9.894e-1230.92Acyl-[acyl-carrier-protein] dehydrogenase mbtN OS=... [more]
MBTN_MYCTU1.688e-1128.95Acyl-[acyl-carrier-protein] dehydrogenase mbtN OS=... [more]
MBTN_MYCBO1.688e-1128.95Acyl-[acyl-carrier-protein] dehydrogenase mbtN OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_B03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_B03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304801 ID=CB304801; Name=CB304801; organism=Citrus sinensis; type=EST; length=699bp
TTTTNNNTTTTTTTTTTTTTTTTTTTCTTTGTAAAGTTGATAAACCGGTA
AATTTTATAATTCAGCACTTGTTCGTGCGTTCCCTGTTTCAAACCAAGGG
AATTTCACAATTTAAAATGAATATAAAAAGTATGTGCAAGTGAGAATCCT
ACAAAACGGCCATCTCTCACTGTTGCTTTAAAAGCTTGCGACCTATAATC
ATTCTTCTTATCTCGCTGGTGCCTGCCCCAATTTCATATAGTTTGGCATC
TCGAAGGAGACGTCCAGTGGCATACTCATTTACATAACCATTACCACCTA
AACATTGAATAGCCTGCAAAGCAACTTGGGTGGCTCTTTCAGCTGCACAA
AGTATCACTCCAGCACAGTCCTTAGGGTCAACTTTTCCGTTGTCACAGTC
CCTGGCAACAGAATAAACATAGGACCTTGATGATTGTAAAGCAGTATACA
TGTCAGCAGTTTTTCCCTGGATAAACTGAAATTCCCCAAGTGGACGGCCA
AATTGCTCCCGCTGACGAACATAAGGAAGAACAACATCAATGCATGCCTG
CATAATACCCAGGGGCCCAGCTGCCAAAACAAGCCTCTCCAAATCTAGTC
CTGACATCATAACATAAACTCCTTTTCCTTCCTGCCCAAGAACATTCTCA
TTTGGAACAAAGCAATTCTCAAACACAAGCTCACATGTATCACTTCCTC
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