CB304801

Overview
NameCB304801
Unique NameCB304801
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig738 contig Csv1_Contig738:87..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACDP_MYCBO (Probable acyl-CoA dehydrogenase fadE25 OS=Mycobacterium bovis GN=fadE25 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.680e-27
Identity = 62/175 (35.43%), Postives = 100/175 (57.14%), Query Frame = -3
Query:  176 GSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILC-AAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLK 697
            GS T EL FENC +P + ++G+ G G    ++ LD  R  + A  +GI Q  +D  + Y + R+QFG  +  FQ +Q   ADM   ++++R  VYS A   + G+ D    +    C A++ A +V   A+Q  GG GY  ++   R +RDAK+ +I  GT++I+R+++ R LL+
Sbjct:  215 GSPTTELYFENCRIPGDRIIGEPGTGFKTALATLDHTRPTIGAQAVGIAQGALDAAIAYTKDRKQFGESISTFQAVQFMLADMAMKVEAARLMVYSAAARAERGEPDLGFISAASKCFASDVAMEVTTDAVQLFGGAGYTTDFPVERFMRDAKITQIYEGTNQIQRVVMSRALLR 389          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACDA_BACSU (Acyl-CoA dehydrogenase OS=Bacillus subtilis GN=acdA PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.194e-27
Identity = 69/171 (40.35%), Postives = 98/171 (57.31%), Query Frame = -3
Query:  182 SDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKL 694
            S T E++FE+C VP    LG+EG+G  + M  LD  R  +AA  +GI Q  +D  L Y ++R+QFG+ + E Q I  K ADM T +++SR   Y  A    +G    K  A   L A + A +V  +A+Q  GG GY  +Y   R +RDAK+ +I  GT EI+R++I R L
Sbjct:  207 SPTTEIMFEDCVVPASKRLGEEGEGFKIAMKTLDGGRNGIAAQAVGIAQGALDAALQYAKERKQFGKSIAEQQGIAFKLADMATMIEASRLLTYQAAWLESSGLPYGKASAMSKLMAGDTAMKVTTEAVQIFGGYGYTKDYPVERYMRDAKITQIYEGTQEIQRLVISRML 377          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACADM_DROME (Probable medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Drosophila melanogaster GN=CG12262 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.422e-26
Identity = 67/171 (39.18%), Postives = 99/171 (57.89%), Query Frame = -3
Query:  182 SDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKL 694
            SDT  + FE+  VP ENVL  EG G  + M   D  R  +AAG +G+ Q C+D  L Y  +R+ FG P+   Q +Q   ADM   +++SR      A + D G+ +    +     AA+ A ++A  A+Q  GGNG+ +EY   +L+RDAK+Y+I  GTS+I+R+II R +
Sbjct:  241 SDTRGITFEDVRVPKENVLIGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRCLDEALKYALERKTFGVPIAYHQAVQFMLADMAIGVETSRLAWRLSAWEIDQGRRNSYYASIAKCHAADMANKIASDAVQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRLIISRNM 411          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACDP_MYCLE (Probable acyl-CoA dehydrogenase fadE25 OS=Mycobacterium leprae GN=fadE25 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.168e-26
Identity = 60/175 (34.29%), Postives = 100/175 (57.14%), Query Frame = -3
Query:  176 GSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILC-AAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLK 697
            GS T EL F+ C +P + ++G+ G G    ++ LD  R  + A  +GI Q  +D  + Y + R+QFG  +  FQ IQ   ADM   ++++R  VY+ A   + G+ D    +    C A++ A +V   A+Q  GG GY +++   R +RDAK+ +I  GT++I+R+++ R LL+
Sbjct:  215 GSPTTELYFDKCRIPGDRIIGEPGTGFKTALATLDHTRPTIGAQAVGIAQGALDAAIVYTKDRKQFGESISTFQSIQFMLADMAMKVEAARLIVYAAAARAERGEPDLGFISAASKCFASDIAMEVTTDAVQLFGGAGYTSDFPVERFMRDAKITQIYEGTNQIQRVVMSRALLR 389          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACADM_PANTR (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Pan troglodytes GN=ACADM PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.682e-25
Identity = 66/170 (38.82%), Postives = 98/170 (57.65%), Query Frame = -3
Query:  185 SDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRK 694
            SDT  +VFE+  VP ENVL  +G G  V M   D  R V+AAG +G+ Q  +D    Y  +R+ FG+ L E Q I    A+M   ++ +R      A + D+G+ +    +     A + A Q+A  A+Q LGGNG+  EY   +L+RDAK+Y+I  GTS+I+R+I+ R+
Sbjct:  245 SDTRGIVFEDVKVPRENVLIGDGAGFKVAMGAFDKTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIVARE 414          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACADM_HUMAN (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADM PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.682e-25
Identity = 66/170 (38.82%), Postives = 98/170 (57.65%), Query Frame = -3
Query:  185 SDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRK 694
            SDT  +VFE+  VP ENVL  +G G  V M   D  R V+AAG +G+ Q  +D    Y  +R+ FG+ L E Q I    A+M   ++ +R      A + D+G+ +    +     A + A Q+A  A+Q LGGNG+  EY   +L+RDAK+Y+I  GTS+I+R+I+ R+
Sbjct:  245 SDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIVARE 414          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACDSB_BOVIN (Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACADSB PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.575e-25
Identity = 62/169 (36.69%), Postives = 95/169 (56.21%), Query Frame = -3
Query:  188 SDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGR 694
            S TC + FEN  VP  N+LGQ G G    +  L+  R+ +AA  LG+ Q C D  +PY+++R+QFGR + +FQ +Q + A M T L+++R   Y+ AR  + G+   K+ +     A+E A  +  + I+ +GG GY   Y   +  RDAK+  I  GTS I+   I +
Sbjct:  258 SSTCPVTFENVKVPKTNILGQVGHGYKYAIGSLNEGRIGIAAQMLGVAQGCFDYTIPYIKERKQFGRRVFDFQGLQHQVAHMATQLEAARLLTYNAARLLEAGRPMIKEASMAKYHASELAGLITSKCIEWMGGVGYTKSYPVEKYFRDAKIGTIYEGTSNIQLNTIAK 426          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACADM_PIG (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Sus scrofa GN=ACADM PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 5.975e-25
Identity = 66/170 (38.82%), Postives = 97/170 (57.06%), Query Frame = -3
Query:  185 SDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRK 694
            SDT  +VFE+  VP ENVL  EG G  + M   D  R  +AAG +G+ Q  +D    Y  +R+ FG+ L E Q I    ADM   ++ +R      A + D+G+ +    +     AA+ A Q+A  A+Q  GGNG+  EY   +L+RDAK+Y+I  GT++I+R+II R+
Sbjct:  245 SDTRGIVFEDVRVPKENVLTGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGISFLLADMAMKVELARLSYQRAAWEIDSGRRNTYYASIAKAYAADIANQLATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRIIIARE 414          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACDSB_PONAB (Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial OS=Pongo abelii GN=ACADSB PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.803e-25
Identity = 63/171 (36.84%), Postives = 95/171 (55.56%), Query Frame = -3
Query:  182 SDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKL 694
            S TC L FEN  VP  N+LGQ G G    +  L+  R+ +AA  LG+ Q C D  +PY+++R QFG+ L +FQ +Q + A + T L+++R   Y+ AR  + GK   K+ +     A+E A Q   + I+ +GG GY  +Y   +  RDAK+  I  G S I+   I + +
Sbjct:  258 SSTCPLTFENVKVPETNILGQIGHGYKYAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARLLTYNAARLLEAGKPFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQLNTIAKHI 428          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACDSB_HUMAN (Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADSB PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.803e-25
Identity = 63/171 (36.84%), Postives = 95/171 (55.56%), Query Frame = -3
Query:  182 SDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKL 694
            S TC L FEN  VP  N+LGQ G G    +  L+  R+ +AA  LG+ Q C D  +PY+++R QFG+ L +FQ +Q + A + T L+++R   Y+ AR  + GK   K+ +     A+E A Q   + I+ +GG GY  +Y   +  RDAK+  I  G S I+   I + +
Sbjct:  258 SSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARLLTYNAARLLEAGKPFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQLNTIAKHI 428          
The following BLAST results are available for this feature:
BLAST of CB304801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
ACDP_MYCBO1.680e-2735.43Probable acyl-CoA dehydrogenase fadE25 OS=Mycobact... [more]
ACDA_BACSU2.194e-2740.35Acyl-CoA dehydrogenase OS=Bacillus subtilis GN=acd... [more]
ACADM_DROME1.422e-2639.18Probable medium-chain specific acyl-CoA dehydrogen... [more]
ACDP_MYCLE3.168e-2634.29Probable acyl-CoA dehydrogenase fadE25 OS=Mycobact... [more]
ACADM_PANTR2.682e-2538.82Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACADM_HUMAN2.682e-2538.82Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACDSB_BOVIN4.575e-2536.69Short/branched chain specific acyl-CoA dehydrogena... [more]
ACADM_PIG5.975e-2538.82Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACDSB_PONAB7.803e-2536.84Short/branched chain specific acyl-CoA dehydrogena... [more]
ACDSB_HUMAN7.803e-2536.84Short/branched chain specific acyl-CoA dehydrogena... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_B03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_B03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304801 ID=CB304801; Name=CB304801; organism=Citrus sinensis; type=EST; length=699bp
TTTTNNNTTTTTTTTTTTTTTTTTTTCTTTGTAAAGTTGATAAACCGGTA
AATTTTATAATTCAGCACTTGTTCGTGCGTTCCCTGTTTCAAACCAAGGG
AATTTCACAATTTAAAATGAATATAAAAAGTATGTGCAAGTGAGAATCCT
ACAAAACGGCCATCTCTCACTGTTGCTTTAAAAGCTTGCGACCTATAATC
ATTCTTCTTATCTCGCTGGTGCCTGCCCCAATTTCATATAGTTTGGCATC
TCGAAGGAGACGTCCAGTGGCATACTCATTTACATAACCATTACCACCTA
AACATTGAATAGCCTGCAAAGCAACTTGGGTGGCTCTTTCAGCTGCACAA
AGTATCACTCCAGCACAGTCCTTAGGGTCAACTTTTCCGTTGTCACAGTC
CCTGGCAACAGAATAAACATAGGACCTTGATGATTGTAAAGCAGTATACA
TGTCAGCAGTTTTTCCCTGGATAAACTGAAATTCCCCAAGTGGACGGCCA
AATTGCTCCCGCTGACGAACATAAGGAAGAACAACATCAATGCATGCCTG
CATAATACCCAGGGGCCCAGCTGCCAAAACAAGCCTCTCCAAATCTAGTC
CTGACATCATAACATAAACTCCTTTTCCTTCCTGCCCAAGAACATTCTCA
TTTGGAACAAAGCAATTCTCAAACACAAGCTCACATGTATCACTTCCTC
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