CB304801

Overview
NameCB304801
Unique NameCB304801
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig738 contig Csv1_Contig738:87..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACDSB_RAT (Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Acadsb PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.127e-23
Identity = 60/171 (35.09%), Postives = 96/171 (56.14%), Query Frame = -3
Query:  182 SDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKL 694
            S TC+L FEN  VP  +VLG+ G G    +  L+  R+ +AA  LG+ Q C D  +PY+++R QFG+ + +FQ +Q + A + T L+++R   Y+ AR  + G+   K+ +     A+E A     + I+ +GG GY  +Y   +  RDAK+  I  GTS I+   I + +
Sbjct:  258 SSTCQLTFENVKVPETSVLGKIGHGYKYAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERMQFGKRIFDFQGLQHQVAHVATQLEAARLLTYNAARLVEAGRPFIKEASMAKYYASEVAGLTTSKCIEWMGGVGYTKDYPVEKFFRDAKIGTIYEGTSNIQLNTIAKHI 428          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACDSB_MOUSE (Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acadsb PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.127e-23
Identity = 59/171 (34.50%), Postives = 95/171 (55.56%), Query Frame = -3
Query:  182 SDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKL 694
            S TC+L FEN  VP  N+LG+ G G    +  L+  R+ +AA  LG+ Q C D  +PY+++R QFG+ + +FQ +Q + A + T L+++R   Y+ AR  + G+   K+ +     A+E A     + I+ +GG GY  +Y   +  RDAK+  I  G S I+   I + +
Sbjct:  258 SSTCQLTFENVKVPETNILGKIGHGYKYAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERMQFGKRIFDFQGLQHQVAQVATQLEATRLLTYNAARLVEAGRPFIKEASMAKYYASEVAGLTTSKCIEWMGGVGYTKDYPVEKFFRDAKIGTIYEGASNIQLNTIAKHI 428          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACAD8_BOVIN (Isobutyryl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACAD8 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.592e-23
Identity = 60/173 (34.68%), Postives = 100/173 (57.80%), Query Frame = -3
Query:  173 TCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDP-KDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 688
            T  ++FE+C VP  N +G EG+G  + M GL+  R+ +A+  LG   A I +   Y++ R+QFG PL   Q++Q + ADM   L +SR  + + A      + D    C+   L A +    +  QA+Q  GG GY+ +YA  + +RD+++++I  G++E+ RM+I R LL++
Sbjct:  244 TQAVIFEDCAVPVANRIGDEGQGFLIAMKGLNGGRINVASCSLGAAHASIVLARDYLKVRKQFGEPLANSQYLQFQLADMAARLVASRLMIRTAATALQEEREDAIVLCSMAKLFATDECFAICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRMLISRSLLQE 416          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACADM_BOVIN (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACADM PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.304e-23
Identity = 63/170 (37.06%), Postives = 95/170 (55.88%), Query Frame = -3
Query:  185 SDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRK 694
            SDT  +VFE+  VP ENVL  EG G  + M   D  R  +AA  +G+ Q  +D    Y  +R+ FG+ L E Q I    A+M   ++ +R      A + D+G+ +    +     A + A Q+A  A+Q  GGNG+  EY   +L+RDAK+Y+I  GT++I+R+II R+
Sbjct:  245 SDTRGIVFEDVRVPKENVLIGEGAGFKIAMGAFDKTRPPVAAAAVGLAQRALDEATKYALERKTFGKLLIEHQGISFLLAEMAMKVELARLSYQRAAWEVDSGRRNTYYASIAKAYAGDIANQLASDAVQIFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRLIIARE 414          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACAD8_MOUSE (Isobutyryl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acad8 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 7.304e-23
Identity = 60/172 (34.88%), Postives = 100/172 (58.14%), Query Frame = -3
Query:  176 TCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKD-CAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLK 688
            T  ++FE+C VP  N +G EG+G  + M GL+  R+ +A+  LG   A + +   +++ R+QFG PL   Q++Q + ADM T L +SR  + + A      + D    C+   L A E    +  QA+Q  GG GY+ +YA  + +RD+++++I  G++E+ RM+I R LL+
Sbjct:  241 TRAVIFEDCAVPVANRIGTEGQGFLIAMKGLNGGRINVASCSLGAAHASVILTQEHLKVRKQFGAPLARSQYLQFQLADMATKLVASRLMIRTAAVALQEEREDAVALCSMAKLFATEECFAICNQALQMHGGYGYLKDYAVQQYMRDSRVHQILEGSNEVMRMLISRNLLQ 412          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACDSB_DICDI (Probable short/branched chain specific acyl-CoA dehydrogenase OS=Dictyostelium discoideum GN=acadsb PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 56/173 (32.37%), Postives = 96/173 (55.49%), Query Frame = -3
Query:  176 SDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLK 694
            S TCE++ +NC V   ++LG+ G+G  + + GL+  R+ +AA  LG+ Q   D  +PY+ +R+QFG+P+  FQ +Q   AD+   +++ R   Y+ AR  + G       +   L  +  A + A   I  LGG G+  E+   +  RD+K+ +I  GTS I+   I ++++K
Sbjct:  237 SSTCEVILDNCVVKPTDILGELGRGYKIAIEGLNEGRIGIAAQMLGLAQGVFDSTIPYLMERKQFGKPIATFQGMQFTYADLAVDIEAGRLLTYNAARIKEAGLPFVFQASMAKLHCSRVAEKAASACISMLGGVGFTKEFPAEKFFRDSKVGQIYEGTSNIQLQTIAKEIVK 409          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACADM_RAT (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Acadm PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.125e-22
Identity = 61/174 (35.06%), Postives = 96/174 (55.17%), Query Frame = -3
Query:  173 SDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 694
            SDT  + FE+  VP ENVL  EG G  + M   D  R  +AAG +G+ Q  +D    Y   R+ FG+ L E Q +    A+M   ++ +R      A + D+G+ +    +     A + A Q+A  A+Q  GG G+  EY   +L+RDAK+Y+I  GT++I+R+II R+ +++
Sbjct:  245 SDTRGITFEDVRVPKENVLIGEGAGFKIAMGAFDRTRPTVAAGAVGLAQRALDEATKYALDRKTFGKLLVEHQGVSFLLAEMAMKVELARLSYQRAAWEVDSGRRNTYFASIAKAFAGDIANQLATDAVQIFGGYGFNTEYPVEKLMRDAKIYQIYEGTAQIQRLIIAREHIEK 418          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACADM_MOUSE (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acadm PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.125e-22
Identity = 61/174 (35.06%), Postives = 96/174 (55.17%), Query Frame = -3
Query:  173 SDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 694
            SDT  + FE+  VP ENVL  EG G  + M   D  R  +AAG +G+ Q  +D    Y   R+ FG+ L E Q +    A+M   ++ +R      A + D+G+ +    +     A + A Q+A  A+Q  GG G+  EY   +L+RDAK+Y+I  GT++I+R+II R+ +++
Sbjct:  245 SDTRGIAFEDVRVPKENVLIGEGAGFKIAMGAFDRTRPTVAAGAVGLAQRALDEATKYALDRKTFGKLLVEHQGVSFLLAEMAMKVELARLSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQIFGGYGFNTEYPVEKLMRDAKIYQIYEGTAQIQRLIIAREHIEK 418          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACADM_MACFA (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=ACADM PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.125e-22
Identity = 61/170 (35.88%), Postives = 95/170 (55.88%), Query Frame = -3
Query:  185 SDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRK 694
            SDT  +VFE+  V  ENVL  +G G  + M   D  R  +++G +G+ Q  +D    Y  +R+ FG+ L E Q I    A+M   ++ +R      A + D+G+ +    +     A + A Q+A  A+Q  GGNG+  EY   +L+RDAK+Y+I  GTS+I+R+II R+
Sbjct:  245 SDTRGIVFEDVKVLKENVLIGDGAGFKIAMGAFDKTRPTVSSGAVGLAQRALDEATKYALERKTFGKLLIEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQIFGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIIARE 414          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACAD8_DICDI (Isobutyryl-CoA dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=acad8 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.734e-22
Identity = 62/177 (35.03%), Postives = 99/177 (55.93%), Query Frame = -3
Query:  176 TCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVI------LCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLK 688
            T  L+FE+C VP  N++G+EG+G  + M+ L+  R+ + A  LG  Q+C+     +V+ R+QF +PL  FQ +Q K ADM T L +SR  + + A       +D KD +  +      L A +   +V   ++Q  GG GY+ +Y   R LRD +++ I  G+  + R+II R+L K
Sbjct:  242 TRALIFEDCRVPVGNLIGKEGQGFSIAMNALNGGRINIGACSLGGAQSCLVAARDHVKVRKQFNQPLEHFQAVQFKMADMATKLHASRIMIRNAA-----AMLDAKDPSAHVYIAMAKLFACDECFKVTDDSLQLFGGYGYLKDYPVERYLRDLRVHRILEGSDAVMRLIISRELSK 413          
The following BLAST results are available for this feature:
BLAST of CB304801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
ACDSB_RAT1.127e-2335.09Short/branched chain specific acyl-CoA dehydrogena... [more]
ACDSB_MOUSE1.127e-2334.50Short/branched chain specific acyl-CoA dehydrogena... [more]
ACAD8_BOVIN5.592e-2334.68Isobutyryl-CoA dehydrogenase, mitochondrial OS=Bos... [more]
ACADM_BOVIN7.304e-2337.06Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACAD8_MOUSE7.304e-2334.88Isobutyryl-CoA dehydrogenase, mitochondrial OS=Mus... [more]
ACDSB_DICDI1.627e-2232.37Probable short/branched chain specific acyl-CoA de... [more]
ACADM_RAT2.125e-2235.06Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACADM_MOUSE2.125e-2235.06Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACADM_MACFA2.125e-2235.88Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACAD8_DICDI4.734e-2235.03Isobutyryl-CoA dehydrogenase, mitochondrial OS=Dic... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_B03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_B03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304801 ID=CB304801; Name=CB304801; organism=Citrus sinensis; type=EST; length=699bp
TTTTNNNTTTTTTTTTTTTTTTTTTTCTTTGTAAAGTTGATAAACCGGTA
AATTTTATAATTCAGCACTTGTTCGTGCGTTCCCTGTTTCAAACCAAGGG
AATTTCACAATTTAAAATGAATATAAAAAGTATGTGCAAGTGAGAATCCT
ACAAAACGGCCATCTCTCACTGTTGCTTTAAAAGCTTGCGACCTATAATC
ATTCTTCTTATCTCGCTGGTGCCTGCCCCAATTTCATATAGTTTGGCATC
TCGAAGGAGACGTCCAGTGGCATACTCATTTACATAACCATTACCACCTA
AACATTGAATAGCCTGCAAAGCAACTTGGGTGGCTCTTTCAGCTGCACAA
AGTATCACTCCAGCACAGTCCTTAGGGTCAACTTTTCCGTTGTCACAGTC
CCTGGCAACAGAATAAACATAGGACCTTGATGATTGTAAAGCAGTATACA
TGTCAGCAGTTTTTCCCTGGATAAACTGAAATTCCCCAAGTGGACGGCCA
AATTGCTCCCGCTGACGAACATAAGGAAGAACAACATCAATGCATGCCTG
CATAATACCCAGGGGCCCAGCTGCCAAAACAAGCCTCTCCAAATCTAGTC
CTGACATCATAACATAAACTCCTTTTCCTTCCTGCCCAAGAACATTCTCA
TTTGGAACAAAGCAATTCTCAAACACAAGCTCACATGTATCACTTCCTC
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