CB304801

Overview
NameCB304801
Unique NameCB304801
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig738 contig Csv1_Contig738:87..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_SHISS (Crotonobetainyl-CoA dehydrogenase OS=Shigella sonnei (strain Ss046) GN=caiA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 54/171 (31.58%), Postives = 83/171 (48.54%), Query Frame = -3 
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F++  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S ++ +Y  A   DNG +   D A      A  A +V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378
[Close]
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_SHIFL (Crotonobetainyl-CoA dehydrogenase OS=Shigella flexneri GN=caiA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 54/171 (31.58%), Postives = 83/171 (48.54%), Query Frame = -3 
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F++  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S ++ +Y  A   DNG +   D A      A  A +V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378
[Close]
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_SHIDS (Crotonobetainyl-CoA dehydrogenase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=caiA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 54/171 (31.58%), Postives = 83/171 (48.54%), Query Frame = -3 
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F++  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S ++ +Y  A   DNG +   D A      A  A +V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378
[Close]
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_ESCF3 (Crotonobetainyl-CoA dehydrogenase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=caiA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 54/171 (31.58%), Postives = 83/171 (48.54%), Query Frame = -3 
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F++  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S ++ +Y  A   DNG +   D A      A  A +V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378
[Close]
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_ECOUT (Crotonobetainyl-CoA dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=caiA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 54/171 (31.58%), Postives = 83/171 (48.54%), Query Frame = -3 
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F++  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S ++ +Y  A   DNG +   D A      A  A +V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378
[Close]
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_ECOSM (Crotonobetainyl-CoA dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=caiA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 54/171 (31.58%), Postives = 83/171 (48.54%), Query Frame = -3 
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F++  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S ++ +Y  A   DNG +   D A      A  A +V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378
[Close]
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_ECOSE (Crotonobetainyl-CoA dehydrogenase OS=Escherichia coli (strain SE11) GN=caiA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 54/171 (31.58%), Postives = 83/171 (48.54%), Query Frame = -3 
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F++  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S ++ +Y  A   DNG +   D A      A  A +V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378
[Close]
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_ECOLU (Crotonobetainyl-CoA dehydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=caiA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 54/171 (31.58%), Postives = 83/171 (48.54%), Query Frame = -3 
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F++  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S ++ +Y  A   DNG +   D A      A  A +V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378
[Close]
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_ECOLI (Crotonobetainyl-CoA dehydrogenase OS=Escherichia coli (strain K12) GN=caiA PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 54/171 (31.58%), Postives = 83/171 (48.54%), Query Frame = -3 
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F++  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S ++ +Y  A   DNG +   D A      A  A +V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378
[Close]
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_ECOLC (Crotonobetainyl-CoA dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=caiA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 54/171 (31.58%), Postives = 83/171 (48.54%), Query Frame = -3 
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F++  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S ++ +Y  A   DNG +   D A      A  A +V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378
The following BLAST results are available for this feature:
BLAST of CB304801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
CAIA_SHISS1.289e-1931.58Crotonobetainyl-CoA dehydrogenase OS=Shigella sonn... [more]
CAIA_SHIFL1.289e-1931.58Crotonobetainyl-CoA dehydrogenase OS=Shigella flex... [more]
CAIA_SHIDS1.289e-1931.58Crotonobetainyl-CoA dehydrogenase OS=Shigella dyse... [more]
CAIA_ESCF31.289e-1931.58Crotonobetainyl-CoA dehydrogenase OS=Escherichia f... [more]
CAIA_ECOUT1.289e-1931.58Crotonobetainyl-CoA dehydrogenase OS=Escherichia c... [more]
CAIA_ECOSM1.289e-1931.58Crotonobetainyl-CoA dehydrogenase OS=Escherichia c... [more]
CAIA_ECOSE1.289e-1931.58Crotonobetainyl-CoA dehydrogenase OS=Escherichia c... [more]
CAIA_ECOLU1.289e-1931.58Crotonobetainyl-CoA dehydrogenase OS=Escherichia c... [more]
CAIA_ECOLI1.289e-1931.58Crotonobetainyl-CoA dehydrogenase OS=Escherichia c... [more]
CAIA_ECOLC1.289e-1931.58Crotonobetainyl-CoA dehydrogenase OS=Escherichia c... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_B03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_B03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304801 ID=CB304801; Name=CB304801; organism=Citrus sinensis; type=EST; length=699bp
TTTTNNNTTTTTTTTTTTTTTTTTTTCTTTGTAAAGTTGATAAACCGGTA
AATTTTATAATTCAGCACTTGTTCGTGCGTTCCCTGTTTCAAACCAAGGG
AATTTCACAATTTAAAATGAATATAAAAAGTATGTGCAAGTGAGAATCCT
ACAAAACGGCCATCTCTCACTGTTGCTTTAAAAGCTTGCGACCTATAATC
ATTCTTCTTATCTCGCTGGTGCCTGCCCCAATTTCATATAGTTTGGCATC
TCGAAGGAGACGTCCAGTGGCATACTCATTTACATAACCATTACCACCTA
AACATTGAATAGCCTGCAAAGCAACTTGGGTGGCTCTTTCAGCTGCACAA
AGTATCACTCCAGCACAGTCCTTAGGGTCAACTTTTCCGTTGTCACAGTC
CCTGGCAACAGAATAAACATAGGACCTTGATGATTGTAAAGCAGTATACA
TGTCAGCAGTTTTTCCCTGGATAAACTGAAATTCCCCAAGTGGACGGCCA
AATTGCTCCCGCTGACGAACATAAGGAAGAACAACATCAATGCATGCCTG
CATAATACCCAGGGGCCCAGCTGCCAAAACAAGCCTCTCCAAATCTAGTC
CTGACATCATAACATAAACTCCTTTTCCTTCCTGCCCAAGAACATTCTCA
TTTGGAACAAAGCAATTCTCAAACACAAGCTCACATGTATCACTTCCTC
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