CB304801

Overview
NameCB304801
Unique NameCB304801
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig738 contig Csv1_Contig738:87..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_ECOL6 (Crotonobetainyl-CoA dehydrogenase OS=Escherichia coli O6 GN=caiA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 54/171 (31.58%), Postives = 83/171 (48.54%), Query Frame = -3 
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F++  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S ++ +Y  A   DNG +   D A      A  A +V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378
[Close]
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_ECOL5 (Crotonobetainyl-CoA dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=caiA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 54/171 (31.58%), Postives = 83/171 (48.54%), Query Frame = -3 
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F++  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S ++ +Y  A   DNG +   D A      A  A +V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378
[Close]
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_ECOK1 (Crotonobetainyl-CoA dehydrogenase OS=Escherichia coli O1:K1 / APEC GN=caiA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 54/171 (31.58%), Postives = 83/171 (48.54%), Query Frame = -3 
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F++  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S ++ +Y  A   DNG +   D A      A  A +V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378
[Close]
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_ECOHS (Crotonobetainyl-CoA dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=caiA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 54/171 (31.58%), Postives = 83/171 (48.54%), Query Frame = -3 
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F++  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S ++ +Y  A   DNG +   D A      A  A +V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378
[Close]
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_ECODH (Crotonobetainyl-CoA dehydrogenase OS=Escherichia coli (strain K12 / DH10B) GN=caiA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 54/171 (31.58%), Postives = 83/171 (48.54%), Query Frame = -3 
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F++  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S ++ +Y  A   DNG +   D A      A  A +V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378
[Close]
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_ECOBW (Crotonobetainyl-CoA dehydrogenase OS=Escherichia coli (strain K12 / BW2952) GN=caiA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 54/171 (31.58%), Postives = 83/171 (48.54%), Query Frame = -3 
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F++  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S ++ +Y  A   DNG +   D A      A  A +V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378
[Close]
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_ECO8A (Crotonobetainyl-CoA dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=caiA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 54/171 (31.58%), Postives = 83/171 (48.54%), Query Frame = -3 
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F++  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S ++ +Y  A   DNG +   D A      A  A +V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378
[Close]
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_ECO81 (Crotonobetainyl-CoA dehydrogenase OS=Escherichia coli O81 (strain ED1a) GN=caiA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 54/171 (31.58%), Postives = 83/171 (48.54%), Query Frame = -3 
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F++  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S ++ +Y  A   DNG +   D A      A  A +V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378
[Close]
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_ECO7I (Crotonobetainyl-CoA dehydrogenase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=caiA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 54/171 (31.58%), Postives = 83/171 (48.54%), Query Frame = -3 
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F++  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S ++ +Y  A   DNG +   D A      A  A +V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378
[Close]
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_ECO5E (Crotonobetainyl-CoA dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=caiA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 54/171 (31.58%), Postives = 83/171 (48.54%), Query Frame = -3 
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F++  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S ++ +Y  A   DNG +   D A      A  A +V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378
The following BLAST results are available for this feature:
BLAST of CB304801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
CAIA_ECOL61.289e-1931.58Crotonobetainyl-CoA dehydrogenase OS=Escherichia c... [more]
CAIA_ECOL51.289e-1931.58Crotonobetainyl-CoA dehydrogenase OS=Escherichia c... [more]
CAIA_ECOK11.289e-1931.58Crotonobetainyl-CoA dehydrogenase OS=Escherichia c... [more]
CAIA_ECOHS1.289e-1931.58Crotonobetainyl-CoA dehydrogenase OS=Escherichia c... [more]
CAIA_ECODH1.289e-1931.58Crotonobetainyl-CoA dehydrogenase OS=Escherichia c... [more]
CAIA_ECOBW1.289e-1931.58Crotonobetainyl-CoA dehydrogenase OS=Escherichia c... [more]
CAIA_ECO8A1.289e-1931.58Crotonobetainyl-CoA dehydrogenase OS=Escherichia c... [more]
CAIA_ECO811.289e-1931.58Crotonobetainyl-CoA dehydrogenase OS=Escherichia c... [more]
CAIA_ECO7I1.289e-1931.58Crotonobetainyl-CoA dehydrogenase OS=Escherichia c... [more]
CAIA_ECO5E1.289e-1931.58Crotonobetainyl-CoA dehydrogenase OS=Escherichia c... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_B03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_B03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304801 ID=CB304801; Name=CB304801; organism=Citrus sinensis; type=EST; length=699bp
TTTTNNNTTTTTTTTTTTTTTTTTTTCTTTGTAAAGTTGATAAACCGGTA
AATTTTATAATTCAGCACTTGTTCGTGCGTTCCCTGTTTCAAACCAAGGG
AATTTCACAATTTAAAATGAATATAAAAAGTATGTGCAAGTGAGAATCCT
ACAAAACGGCCATCTCTCACTGTTGCTTTAAAAGCTTGCGACCTATAATC
ATTCTTCTTATCTCGCTGGTGCCTGCCCCAATTTCATATAGTTTGGCATC
TCGAAGGAGACGTCCAGTGGCATACTCATTTACATAACCATTACCACCTA
AACATTGAATAGCCTGCAAAGCAACTTGGGTGGCTCTTTCAGCTGCACAA
AGTATCACTCCAGCACAGTCCTTAGGGTCAACTTTTCCGTTGTCACAGTC
CCTGGCAACAGAATAAACATAGGACCTTGATGATTGTAAAGCAGTATACA
TGTCAGCAGTTTTTCCCTGGATAAACTGAAATTCCCCAAGTGGACGGCCA
AATTGCTCCCGCTGACGAACATAAGGAAGAACAACATCAATGCATGCCTG
CATAATACCCAGGGGCCCAGCTGCCAAAACAAGCCTCTCCAAATCTAGTC
CTGACATCATAACATAAACTCCTTTTCCTTCCTGCCCAAGAACATTCTCA
TTTGGAACAAAGCAATTCTCAAACACAAGCTCACATGTATCACTTCCTC
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