CB304801

Overview
NameCB304801
Unique NameCB304801
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig738 contig Csv1_Contig738:87..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_SALSV (Crotonobetainyl-CoA dehydrogenase OS=Salmonella schwarzengrund (strain CVM19633) GN=caiA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.431e-18
Identity = 53/171 (30.99%), Postives = 82/171 (47.95%), Query Frame = -3 
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F++  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S ++ +   A   DNG +   D A      A  A +V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLLEAAWKADNGTITSGDAAMCKYFCANAAFEVVDTAMQVLGGVGIAGNHRITRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378
[Close]
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_SALPK (Crotonobetainyl-CoA dehydrogenase OS=Salmonella paratyphi A (strain AKU_12601) GN=caiA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.431e-18
Identity = 53/171 (30.99%), Postives = 82/171 (47.95%), Query Frame = -3 
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F++  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S ++ +   A   DNG +   D A      A  A +V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLLEAAWKADNGTITSGDAAMCKYFCANAAFEVVDTAMQVLGGVGIAGNHRITRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378
[Close]
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_SALPC (Crotonobetainyl-CoA dehydrogenase OS=Salmonella paratyphi C (strain RKS4594) GN=caiA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.431e-18
Identity = 53/171 (30.99%), Postives = 82/171 (47.95%), Query Frame = -3 
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F++  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S ++ +   A   DNG +   D A      A  A +V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLLEAAWKADNGTITSGDAAMCKYFCANAAFEVVDTAMQVLGGVGIAGNHRITRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378
[Close]
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_SALPB (Crotonobetainyl-CoA dehydrogenase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=caiA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.431e-18
Identity = 53/171 (30.99%), Postives = 82/171 (47.95%), Query Frame = -3 
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F++  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S ++ +   A   DNG +   D A      A  A +V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLLEAAWKADNGTITSGDAAMCKYFCANAAFEVVDTAMQVLGGVGIAGNHRITRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378
[Close]
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_SALPA (Crotonobetainyl-CoA dehydrogenase OS=Salmonella paratyphi A GN=caiA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.431e-18
Identity = 53/171 (30.99%), Postives = 82/171 (47.95%), Query Frame = -3 
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F++  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S ++ +   A   DNG +   D A      A  A +V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLLEAAWKADNGTITSGDAAMCKYFCANAAFEVVDTAMQVLGGVGIAGNHRITRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378
[Close]
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_SALNS (Crotonobetainyl-CoA dehydrogenase OS=Salmonella newport (strain SL254) GN=caiA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.431e-18
Identity = 53/171 (30.99%), Postives = 82/171 (47.95%), Query Frame = -3 
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F++  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S ++ +   A   DNG +   D A      A  A +V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLLEAAWKADNGTITSGDAAMCKYFCANAAFEVVDTAMQVLGGVGIAGNHRITRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378
[Close]
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_SALHS (Crotonobetainyl-CoA dehydrogenase OS=Salmonella heidelberg (strain SL476) GN=caiA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.431e-18
Identity = 53/171 (30.99%), Postives = 82/171 (47.95%), Query Frame = -3 
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F++  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S ++ +   A   DNG +   D A      A  A +V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLLEAAWKADNGTITSGDAAMCKYFCANAAFEVVDTAMQVLGGVGIAGNHRITRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378
[Close]
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_SALG2 (Crotonobetainyl-CoA dehydrogenase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=caiA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.431e-18
Identity = 53/171 (30.99%), Postives = 82/171 (47.95%), Query Frame = -3 
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F++  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S ++ +   A   DNG +   D A      A  A +V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLLEAAWKADNGTITSGDAAMCKYFCANAAFEVVDTAMQVLGGVGIAGNHRITRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378
[Close]
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_SALEP (Crotonobetainyl-CoA dehydrogenase OS=Salmonella enteritidis PT4 (strain P125109) GN=caiA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.431e-18
Identity = 53/171 (30.99%), Postives = 82/171 (47.95%), Query Frame = -3 
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F++  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S ++ +   A   DNG +   D A      A  A +V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLLEAAWKADNGTITSGDAAMCKYFCANAAFEVVDTAMQVLGGVGIAGNHRITRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378
[Close]
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_SALDC (Crotonobetainyl-CoA dehydrogenase OS=Salmonella dublin (strain CT_02021853) GN=caiA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.431e-18
Identity = 53/171 (30.99%), Postives = 82/171 (47.95%), Query Frame = -3 
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F++  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S ++ +   A   DNG +   D A      A  A +V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLLEAAWKADNGTITSGDAAMCKYFCANAAFEVVDTAMQVLGGVGIAGNHRITRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378
The following BLAST results are available for this feature:
BLAST of CB304801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
CAIA_SALSV2.431e-1830.99Crotonobetainyl-CoA dehydrogenase OS=Salmonella sc... [more]
CAIA_SALPK2.431e-1830.99Crotonobetainyl-CoA dehydrogenase OS=Salmonella pa... [more]
CAIA_SALPC2.431e-1830.99Crotonobetainyl-CoA dehydrogenase OS=Salmonella pa... [more]
CAIA_SALPB2.431e-1830.99Crotonobetainyl-CoA dehydrogenase OS=Salmonella pa... [more]
CAIA_SALPA2.431e-1830.99Crotonobetainyl-CoA dehydrogenase OS=Salmonella pa... [more]
CAIA_SALNS2.431e-1830.99Crotonobetainyl-CoA dehydrogenase OS=Salmonella ne... [more]
CAIA_SALHS2.431e-1830.99Crotonobetainyl-CoA dehydrogenase OS=Salmonella he... [more]
CAIA_SALG22.431e-1830.99Crotonobetainyl-CoA dehydrogenase OS=Salmonella ga... [more]
CAIA_SALEP2.431e-1830.99Crotonobetainyl-CoA dehydrogenase OS=Salmonella en... [more]
CAIA_SALDC2.431e-1830.99Crotonobetainyl-CoA dehydrogenase OS=Salmonella du... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_B03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_B03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304801 ID=CB304801; Name=CB304801; organism=Citrus sinensis; type=EST; length=699bp
TTTTNNNTTTTTTTTTTTTTTTTTTTCTTTGTAAAGTTGATAAACCGGTA
AATTTTATAATTCAGCACTTGTTCGTGCGTTCCCTGTTTCAAACCAAGGG
AATTTCACAATTTAAAATGAATATAAAAAGTATGTGCAAGTGAGAATCCT
ACAAAACGGCCATCTCTCACTGTTGCTTTAAAAGCTTGCGACCTATAATC
ATTCTTCTTATCTCGCTGGTGCCTGCCCCAATTTCATATAGTTTGGCATC
TCGAAGGAGACGTCCAGTGGCATACTCATTTACATAACCATTACCACCTA
AACATTGAATAGCCTGCAAAGCAACTTGGGTGGCTCTTTCAGCTGCACAA
AGTATCACTCCAGCACAGTCCTTAGGGTCAACTTTTCCGTTGTCACAGTC
CCTGGCAACAGAATAAACATAGGACCTTGATGATTGTAAAGCAGTATACA
TGTCAGCAGTTTTTCCCTGGATAAACTGAAATTCCCCAAGTGGACGGCCA
AATTGCTCCCGCTGACGAACATAAGGAAGAACAACATCAATGCATGCCTG
CATAATACCCAGGGGCCCAGCTGCCAAAACAAGCCTCTCCAAATCTAGTC
CTGACATCATAACATAAACTCCTTTTCCTTCCTGCCCAAGAACATTCTCA
TTTGGAACAAAGCAATTCTCAAACACAAGCTCACATGTATCACTTCCTC
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