CB304801

Overview
NameCB304801
Unique NameCB304801
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig738 contig Csv1_Contig738:87..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_SALCH (Crotonobetainyl-CoA dehydrogenase OS=Salmonella choleraesuis GN=caiA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.431e-18
Identity = 53/171 (30.99%), Postives = 82/171 (47.95%), Query Frame = -3
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F++  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S ++ +   A   DNG +   D A      A  A +V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLLEAAWKADNGTITSGDAAMCKYFCANAAFEVVDTAMQVLGGVGIAGNHRITRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_SALA4 (Crotonobetainyl-CoA dehydrogenase OS=Salmonella agona (strain SL483) GN=caiA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.431e-18
Identity = 53/171 (30.99%), Postives = 82/171 (47.95%), Query Frame = -3
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F++  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S ++ +   A   DNG +   D A      A  A +V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLLEAAWKADNGTITSGDAAMCKYFCANAAFEVVDTAMQVLGGVGIAGNHRITRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACADV_HUMAN (Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADVL PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.431e-18
Identity = 57/168 (33.93%), Postives = 88/168 (52.38%), Query Frame = -3
Query:  194 SDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVI-LCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMII 694
            S+T E+ F+   VP+ENVLG+ G G  V M  L+  R  +AA   G M+  I   + +   R QFG  +  F  IQ K A M      + S  Y V+ + D G  D +  A +  +  +E A +V  + IQ +GG G++ E    R+LRD +++ I  GT++I R+ +
Sbjct:  305 SNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGEKIHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQGATDFQIEAAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFV 472          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_SALTI (Crotonobetainyl-CoA dehydrogenase OS=Salmonella typhi GN=caiA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 53/171 (30.99%), Postives = 82/171 (47.95%), Query Frame = -3
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F++  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S ++ +   A   DNG +   D A      A  A +V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCTFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLLEAAWKADNGTITSGDAAMCKYFCANAAFEVVDTAMQVLGGVGIAGNHRITRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACADL_HUMAN (Long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADL PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.417e-18
Identity = 53/171 (30.99%), Postives = 91/171 (53.22%), Query Frame = -3
Query:  179 DTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLL 691
            DT EL FE+  +P   +LG+E KG Y +M  L  ERL++A   +   +   +    YV+QR+ FG+ +   Q +Q K A++ T +  +R++V +  +  +  ++D          A+E    VA   +Q  GG GY+ EY   +   DA++  I  GT+EI + +I R+++
Sbjct:  257 DTAELFFEDIRLPASALLGEENKGFYYIMKELPQERLLIADVAISASEFMFEETRNYVKQRKAFGKTVAHLQTVQHKLAELKTHICVTRAFVDNCLQLHEAKRLDSATACMAKYWASELQNSVAYDCVQLHGGWGYMWEYPIAKAYVDARVQPIYGGTNEIMKELIAREIV 427          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_CITK8 (Crotonobetainyl-CoA dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=caiA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.074e-18
Identity = 53/171 (30.99%), Postives = 81/171 (47.37%), Query Frame = -3
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F++  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S ++ +   A   DNG +   D A      A  A  V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEINFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGETIGRFQLIQEKFAHMAIKLNSMKNMLLEAAWKADNGTITSGDAAMCKYFCANAAFDVVDSAMQVLGGVGIAGNHRITRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACADL_MACFA (Long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=ACADL PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.074e-18
Identity = 53/171 (30.99%), Postives = 91/171 (53.22%), Query Frame = -3
Query:  179 DTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLL 691
            DT EL FE+  +P   +LG+E KG Y +M  L  ERL++A   +   +   +    YV+QR+ FG+ +   Q +Q K A++ T +  +R++V +  +  +  ++D          A+E    VA   +Q  GG GY+ EY   +   DA++  I  GT+EI + +I R+++
Sbjct:  257 DTAELFFEDVRLPASALLGEENKGFYYIMKELPQERLLIADMAVSASEFMFEETRNYVKQRKAFGKTVAHLQTVQHKLAELKTHICVTRAFVDNCLQLHEAKRLDSATACMAKYWASELQNSVAYDCVQLHGGWGYMWEYPIAKAYVDARVQPIYGGTNEIMKELIAREIV 427          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_SALAR (Crotonobetainyl-CoA dehydrogenase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=caiA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.239e-18
Identity = 52/171 (30.41%), Postives = 80/171 (46.78%), Query Frame = -3
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F+   +  ++  G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L + ++ +   A   DNG +   D A      A  A +V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDEVELDEKDRFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGETIGRFQLIQEKFAHMAIKLNAMKNMLLEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACADV_BOVIN (Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACADVL PE=2 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 9.239e-18
Identity = 57/168 (33.93%), Postives = 87/168 (51.79%), Query Frame = -3
Query:  194 SDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVI-LCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMII 694
            S+T E+ F+   VP ENVLG+ G G  V M  L+  R  +AA   G M+  I   + +   R QFG  +  F  IQ K A M      + S  Y V+ + D G  D +  A +  +  +E A +V  + IQ +GG G++ E    R+LRD +++ I  GT++I R+ +
Sbjct:  305 SNTAEVYFDGVRVPAENVLGEVGGGFKVAMHILNNGRFGMAAALAGTMKGIIAKAVDHAANRTQFGEKIHNFGLIQEKLARMAMLQYVTESMAYMVSANMDQGSTDFQIEAAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFV 472          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: FADE_BACSU (Probable acyl-CoA dehydrogenase OS=Bacillus subtilis GN=fadE PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.058e-17
Identity = 58/194 (29.90%), Postives = 91/194 (46.91%), Query Frame = -3
Query:  173 GSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYS------------VARDCDNGKVDPK-------DCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 697
            GS T  L+ +   VP EN+LG+ GKG  +  + L++ R  LA G +G  +  I++   Y  QR QF  P+  F   Q K   M + L +  S VY              A D  +G+   K       +C+   +  +E    +  + +Q  GG G++ EY   R  RD+++  I  GT+EI R+I+    LK+
Sbjct:  229 GSSTRTLILDQAEVPKENLLGEIGKGHVIAFNILNIGRYKLAVGTIGASKRVIELSAAYANQRRQFKTPIAGFSLTQEKIGTMASRLYAMESSVYRTVGLFEDNMSQFTAEDLKDGRQIAKSIAEYAIECSLNKVFGSETLDYIVDEGVQIHGGYGFMQEYEVERAYRDSRINRIFEGTNEINRLIVPSTFLKK 422          
The following BLAST results are available for this feature:
BLAST of CB304801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
CAIA_SALCH2.431e-1830.99Crotonobetainyl-CoA dehydrogenase OS=Salmonella ch... [more]
CAIA_SALA42.431e-1830.99Crotonobetainyl-CoA dehydrogenase OS=Salmonella ag... [more]
ACADV_HUMAN2.431e-1833.93Very long-chain specific acyl-CoA dehydrogenase, m... [more]
CAIA_SALTI3.176e-1830.99Crotonobetainyl-CoA dehydrogenase OS=Salmonella ty... [more]
ACADL_HUMAN5.417e-1830.99Long-chain specific acyl-CoA dehydrogenase, mitoch... [more]
CAIA_CITK87.074e-1830.99Crotonobetainyl-CoA dehydrogenase OS=Citrobacter k... [more]
ACADL_MACFA7.074e-1830.99Long-chain specific acyl-CoA dehydrogenase, mitoch... [more]
CAIA_SALAR9.239e-1830.41Crotonobetainyl-CoA dehydrogenase OS=Salmonella ar... [more]
ACADV_BOVIN9.239e-1833.93Very long-chain specific acyl-CoA dehydrogenase, m... [more]
FADE_BACSU2.058e-1729.90Probable acyl-CoA dehydrogenase OS=Bacillus subtil... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_B03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_B03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304801 ID=CB304801; Name=CB304801; organism=Citrus sinensis; type=EST; length=699bp
TTTTNNNTTTTTTTTTTTTTTTTTTTCTTTGTAAAGTTGATAAACCGGTA
AATTTTATAATTCAGCACTTGTTCGTGCGTTCCCTGTTTCAAACCAAGGG
AATTTCACAATTTAAAATGAATATAAAAAGTATGTGCAAGTGAGAATCCT
ACAAAACGGCCATCTCTCACTGTTGCTTTAAAAGCTTGCGACCTATAATC
ATTCTTCTTATCTCGCTGGTGCCTGCCCCAATTTCATATAGTTTGGCATC
TCGAAGGAGACGTCCAGTGGCATACTCATTTACATAACCATTACCACCTA
AACATTGAATAGCCTGCAAAGCAACTTGGGTGGCTCTTTCAGCTGCACAA
AGTATCACTCCAGCACAGTCCTTAGGGTCAACTTTTCCGTTGTCACAGTC
CCTGGCAACAGAATAAACATAGGACCTTGATGATTGTAAAGCAGTATACA
TGTCAGCAGTTTTTCCCTGGATAAACTGAAATTCCCCAAGTGGACGGCCA
AATTGCTCCCGCTGACGAACATAAGGAAGAACAACATCAATGCATGCCTG
CATAATACCCAGGGGCCCAGCTGCCAAAACAAGCCTCTCCAAATCTAGTC
CTGACATCATAACATAAACTCCTTTTCCTTCCTGCCCAAGAACATTCTCA
TTTGGAACAAAGCAATTCTCAAACACAAGCTCACATGTATCACTTCCTC
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