CB304826

Overview
NameCB304826
Unique NameCB304826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length467
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 88.1965 bits (217), Expect = 1.896e-17
Identity = 51/123 (41.46%), Postives = 63/123 (51.22%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVLN---------------QGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGPIQL+ N NY  AGRAIG D L +P+ VA D  +SFKTA+WFWMT        H+V+                 GF      +NG  ECG     +V DR+  Y  YC   GV  G+ L+C
Sbjct:  189 RGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDC 311          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.234e-17
Identity = 52/123 (42.28%), Postives = 64/123 (52.03%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVLN---------------QGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGPIQ++ N NY +AG+AIG D +N+P+ VA D VISFKTA WFWMT        H+V+                 GF      ING  ECG     QV DR+  Y  YC    V  G+ L+C
Sbjct:  177 RGPIQISYNYNYGQAGKAIGVDLVNNPDLVATDAVISFKTAFWFWMTPQSPKPSCHNVITGGWTPSGADRSAGRLPGFGVITNIINGGVECGKGVVPQVQDRIGFYKRYCDILRVSYGNNLDC 299          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 9.410e-17
Identity = 51/123 (41.46%), Postives = 62/123 (50.41%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVLN---------------QGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGPIQL+ N NY  AGRAIG D L +P+ VA D  + FKTA+WFWMT        H+V+                 GF      ING  ECG     +V DR+  Y  YC   GV  G+ L+C
Sbjct:  137 RGPIQLSHNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDC 259          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.229e-16
Identity = 48/123 (39.02%), Postives = 64/123 (52.03%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVLN---------------QGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGPIQ++ N NY   GRAIG + LN+P+ VA + V+SFK+A+WFWMT        H V+                 G+      ING  ECG  +  +V DR+  Y  YC   GV PG  ++C
Sbjct:  197 RGPIQISYNYNYGPCGRAIGQNLLNNPDLVATNAVVSFKSAIWFWMTAQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGVSPGDNIDC 319          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.605e-16
Identity = 50/123 (40.65%), Postives = 62/123 (50.41%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVLN---------------QGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGPIQL+ N NY  AGRAIG D L +P+ VA D  +SFKTA+WFWMT        H+V+                 GF      +NG  ECG     +V DR+  Y  YC    V  G+ L+C
Sbjct:  192 RGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILRVGYGNNLDC 314          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.605e-16
Identity = 49/123 (39.84%), Postives = 63/123 (51.22%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVL---------------NQGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGPIQ++ N NY  AG+A+GFDGL +PE VA    I+F+TALWFWMT        H V+                 GF      +NG  EC      +V +R+  Y  YC+  GVD G  L+C
Sbjct:  162 RGPIQISWNFNYGPAGQALGFDGLRNPEIVANCSDIAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVLGVDVGPNLDC 284          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.096e-16
Identity = 51/123 (41.46%), Postives = 62/123 (50.41%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVL---------------NQGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGP+QLT N NY + GRAIG D LN+P+ +A D  ISFK+A WFWMT        H V+                 GF      ING  ECG     +V DR+  Y  YC   GV  G+ L+C
Sbjct:  184 RGPMQLTWNYNYGQCGRAIGVDLLNNPDLLATDPTISFKSAFWFWMTPQSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTLGVGYGNNLDC 306          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.576e-16
Identity = 48/123 (39.02%), Postives = 63/123 (51.22%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVLN---------------QGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGPIQ++ N NY  AG+AIG + L++P+ VA D  +SFKTA WFWMT        H+V+                 G+      ING  ECG     +V DR+  Y  YC   GV  G+ L+C
Sbjct:  193 RGPIQISYNYNYGPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYCDMLGVSYGANLDC 315          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 6.099e-16
Identity = 49/123 (39.84%), Postives = 63/123 (51.22%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVL---------------NQGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGP+QL+ N NY + GRAIG D LN+P+ ++ D  ISFK+A WFWMT        H+V+                 G+      ING  ECG     QV DR+  Y  YC   GV  G+ L+C
Sbjct:  165 RGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRATGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDC 287          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 7.966e-16
Identity = 49/123 (39.84%), Postives = 63/123 (51.22%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVL---------------NQGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGP+QL+ N NY + GRAIG D LN+P+ ++ D  ISFK+A WFWMT        H+V+                 G+      ING  ECG     QV DR+  Y  YC   GV  G+ L+C
Sbjct:  187 RGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRVPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDC 309          
The following BLAST results are available for this feature:
BLAST of CB304826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
CHI1_HORVU1.896e-1741.4626 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIB_VITVI3.234e-1742.28Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI2_HORVU9.410e-1741.4626 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHI3_TOBAC1.229e-1639.02Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHIA_SECCE1.605e-1640.65Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI10_ORYSJ1.605e-1639.84Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI1_THECC2.096e-1641.46Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI1_ORYSJ3.576e-1639.02Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_GOSHI6.099e-1639.84Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_GOSHI7.966e-1639.84Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_F01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_F01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304826 ID=CB304826; Name=CB304826; organism=Citrus sinensis; type=EST; length=467bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGATCAGGTACAAGAAAAT
TATTCCGTCAGAGTTACCAAACAGAGAAAGTTGTTTGAAATAACTCTGGC
TTATTGTGATACAATATAATACATATACTGTAATATTTTTTGTACAAAAT
ATCTATTCAGCATTCAAGACGTGATCCAGGATCAACACCAAATCTTTTGC
AATAATCAGTGTAACGCCTAACACGATCCAGAACTTGGTCGCGGTTTCGG
CCACCGCATTCAGCAGGACCATTAATTTTCCGAATTGTTTCACTAAAACC
TTGGTTTAGTACTGAGTGCACATATGTCATCCAAAACCACAAAGCAGTCT
TGAAAGATATGACACGGTCCCTGGCTACTGTTTCCGGAGAGTTCAGACCG
TCGAAACCGATGGCCCTTCCCGCCTCTATGTAGTTTCCATTTCCGGTGAG
CTGAATCGGTCCCCGGC
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