CB304830

Overview
NameCB304830
Unique NameCB304830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.494e-11
Identity = 37/114 (32.46%), Postives = 62/114 (54.39%), Query Frame = -3
Query:  226 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPC 567
            +F NV +W++E++ +A  ++  +++GNK DL   + V T  A+ YA+  G+ F+ETSA  + NVE+AF  + SEI     KK     +P  ++      +   G +    KK C
Sbjct:   95 SFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMIMASEI-----KKLQGGIQPNNNSTYNAHVVKPTGFTPIGKKKKC 203          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.952e-11
Identity = 37/101 (36.63%), Postives = 61/101 (60.40%), Query Frame = -3
Query:  265 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIV 567
            +F NV +WL E+  +A  N+  +++GNK+DL   + V    A+++A+  G+ F+ETSA  A NVE+AF T+ +EI      K+  + +P P+  K G  +V
Sbjct:   95 SFNNVKQWLNEIDRYASENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEI------KNRMASQPIPT--KAGGPVV 187          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RB39B_MOUSE (Ras-related protein Rab-39B OS=Mus musculus GN=Rab39b PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.952e-11
Identity = 34/89 (38.20%), Postives = 54/89 (60.67%), Query Frame = -3
Query:  304 TFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE 567
            +F+NV  WL+E + H     IV +++G+K DL   R V   +A+  A   G+ +IETSA +AINVEKAF  +  +IY ++ +  ++  E
Sbjct:   96 SFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKRGEITIQE 184          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RB39B_HUMAN (Ras-related protein Rab-39B OS=Homo sapiens GN=RAB39B PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.952e-11
Identity = 34/89 (38.20%), Postives = 54/89 (60.67%), Query Frame = -3
Query:  304 TFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE 567
            +F+NV  WL+E + H     IV +++G+K DL   R V   +A+  A   G+ +IETSA +AINVEKAF  +  +IY ++ +  ++  E
Sbjct:   96 SFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKRGEITIQE 184          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RB39B_BOVIN (Ras-related protein Rab-39B OS=Bos taurus GN=RAB39B PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.952e-11
Identity = 34/89 (38.20%), Postives = 54/89 (60.67%), Query Frame = -3
Query:  304 TFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE 567
            +F+NV  WL+E + H     IV +++G+K DL   R V   +A+  A   G+ +IETSA +AINVEKAF  +  +IY ++ +  ++  E
Sbjct:   96 SFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKRGDITIQE 184          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB5A_DICDI (Ras-related protein Rab-5A OS=Dictyostelium discoideum GN=rab5A PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.952e-11
Identity = 43/115 (37.39%), Postives = 58/115 (50.43%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 567
            +FE   +W+KEL+     NIVI + GNK DL   R V T +AQ YAE  GL F+ETSA  + NV + F  I  ++ +  + +   SG  A + I  G T           K  CC
Sbjct:   96 SFERAIKWVKELQRQGSPNIVIALAGNKLDLAAKRKVETAEAQQYAEENGLLFMETSAKTSQNVNELFVEIAKKLPKTPTTRP-GSGRVAIAPIDNGNT---------GKKNKCC 200          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.952e-11
Identity = 32/75 (42.67%), Postives = 51/75 (68.00%), Query Frame = -3
Query:  343 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 567
            +F NV +WL+E+  +A  N+  +++GNK+DL   + V    A+ YA++ G+ F+ETSA  A NVE+AF T+ +EI
Sbjct:   98 SFNNVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEI 172          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB26_MOUSE (Ras-related protein Rab-26 OS=Mus musculus GN=Rab26 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.549e-11
Identity = 30/75 (40.00%), Postives = 48/75 (64.00%), Query Frame = -3
Query:  343 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 567
            +F+N+  WL E++++A  ++V+M++GNK D    R V  ED +  A+  GL F+ETSA   +NV+ AF  I  E+
Sbjct:  155 SFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQDRVVKREDGEKLAKEYGLPFMETSARTGLNVDLAFTAIAKEL 229          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.549e-11
Identity = 38/105 (36.19%), Postives = 61/105 (58.10%), Query Frame = -3
Query:  256 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSG-EPAPSNIKEGQTIVVGG 567
            +F NV +WL+E+  +A  N+  +++GNK DL   + V    A+ +A+  G+ F+ETSA  A NVE+AF T+ +EI + +   + S G E +  NI+       GG
Sbjct:   95 SFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATSGGSEKSNVNIQSTPVKSSGG 199          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB19_MOUSE (Ras-related protein Rab-19 OS=Mus musculus GN=Rab19 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 2.549e-11
Identity = 42/118 (35.59%), Postives = 70/118 (59.32%), Query Frame = -3
Query:  226 TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEIYRIISKKSLS-SGEPAPSNI-KEGQTIVVGGASEANTKKPC 570
            +TFE+V  W+ E+  +  +N+VIM+IGNK+DL   R V  EDA + AE+ G L+ +ETSA E+ N+++ F  +  E   +I++ SL   GE A   + ++   ++V      +T+  C
Sbjct:  103 STFESVPHWIHEIEKYGAANLVIMLIGNKSDLWEKRHVLFEDACTLAEKHGLLAVLETSAKESRNIDEVFVLMAKE---LIARNSLHLYGESAQQGLSQDSSPVLVAQVPNESTRCTC 217          
The following BLAST results are available for this feature:
BLAST of CB304830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
RAB1B_DICDI1.494e-1132.46Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
YPTC1_CHLRE1.952e-1136.63GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]
RB39B_MOUSE1.952e-1138.20Ras-related protein Rab-39B OS=Mus musculus GN=Rab... [more]
RB39B_HUMAN1.952e-1138.20Ras-related protein Rab-39B OS=Homo sapiens GN=RAB... [more]
RB39B_BOVIN1.952e-1138.20Ras-related protein Rab-39B OS=Bos taurus GN=RAB39... [more]
RAB5A_DICDI1.952e-1137.39Ras-related protein Rab-5A OS=Dictyostelium discoi... [more]
RAB1A_LYMST1.952e-1142.67Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
RAB26_MOUSE2.549e-1140.00Ras-related protein Rab-26 OS=Mus musculus GN=Rab2... [more]
RAB1_DISOM2.549e-1136.19Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]
RAB19_MOUSE2.549e-1135.59Ras-related protein Rab-19 OS=Mus musculus GN=Rab1... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_F05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_F05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304830 ID=CB304830; Name=CB304830; organism=Citrus sinensis; type=EST; length=575bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCAAAAGTAATTCTGATAT
CACAACAACAAATGAGGAGAATAATTCAAATTTGACATTGTTAACAACAA
ATAATAAAAGCTTAAACAATAAACCATTGAGAGAATGAAAGATTTAACTT
GGAAGCCCGACACGACAAAATGGGAAGAAATTGAGATAAACAAAGAAGAC
AGACCCATCTTTAGGATGAAAAGCAACAAGGTTTCTTTGTGTTGGCCTCT
GATGCCCCTCCTACTACGATAGTCTGTCCTTCTTTGATGTTTGAAGGAGC
TGGCTCCCCTGAAGAGAGGGACTTCTTGCTGATTATCCGGTATATCTCTG
AGAGAATTGTCTGGAAAGCCTTCTCGACATTTATTGCTTCAAGAGCTGAG
GTTTCAATGAAGGAAAGCCCTTCTCTCTCAGCATAGCTTTGGGCATCCTC
TGTGGCAACAGCTCGGAGGTGTTTCAGATCAGTCTTATTGCCAATCATCA
TGATCACAATGTTGGAGTCTGCGTGGTCCCTCAGTTCCTTCAGCCATCGG
CTCACATTTTCAAATGTTGTTGGTT
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