CB304830

Overview
NameCB304830
Unique NameCB304830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RB43L_HUMAN (Putative Rab-43-like protein ENSP00000330714 OS=Homo sapiens PE=5 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 9.685e-11
Identity = 35/77 (45.45%), Postives = 55/77 (71.43%), Query Frame = -3
Query:  343 TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAER-EGLSFIETSALEAINVEKAFQTILSEI 570
            ++F +V  W++++R +A SNIV ++IGNK+DL  LR V+  +AQS AE  + L  IETSA ++ NVE+AF  + +E+
Sbjct:   73 SSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 149          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.685e-11
Identity = 34/93 (36.56%), Postives = 54/93 (58.06%), Query Frame = -3
Query:  289 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSN 567
            +F+N+  W++ + +HA +++  M++GNK D+   R V+ E  +  A   G+ F+ETSA   INVE AF T+  +I   + KK L    P  SN
Sbjct:   95 SFDNIRNWIRNIEEHASADVEKMILGNKRDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK-LEGNSPQGSN 186          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.685e-11
Identity = 34/93 (36.56%), Postives = 54/93 (58.06%), Query Frame = -3
Query:  289 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSN 567
            +F+N+  W++ + +HA +++  M++GNK D+   R V+ E  +  A   G+ F+ETSA   INVE AF T+  +I   + KK L    P  SN
Sbjct:   95 SFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK-LEGNSPQGSN 186          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.685e-11
Identity = 34/93 (36.56%), Postives = 54/93 (58.06%), Query Frame = -3
Query:  289 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSN 567
            +F+N+  W++ + +HA +++  M++GNK D+   R V+ E  +  A   G+ F+ETSA   INVE AF T+  +I   + KK L    P  SN
Sbjct:   95 SFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK-LEGNSPQGSN 186          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.685e-11
Identity = 34/93 (36.56%), Postives = 54/93 (58.06%), Query Frame = -3
Query:  289 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSN 567
            +F+N+  W++ + +HA +++  M++GNK D+   R V+ E  +  A   G+ F+ETSA   INVE AF T+  +I   + KK L    P  SN
Sbjct:   95 SFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK-LEGNSPQGSN 186          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB5A_PIG (Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.685e-11
Identity = 33/75 (44.00%), Postives = 47/75 (62.67%), Query Frame = -3
Query:  343 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 567
            +F     W+KEL+  A  NIVI + GNK DL + RAV  ++AQSYA+   L F+ETSA  ++NV + F  I  ++
Sbjct:  107 SFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB5A_MOUSE (Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.685e-11
Identity = 33/75 (44.00%), Postives = 47/75 (62.67%), Query Frame = -3
Query:  343 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 567
            +F     W+KEL+  A  NIVI + GNK DL + RAV  ++AQSYA+   L F+ETSA  ++NV + F  I  ++
Sbjct:  107 SFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB43_HUMAN (Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.685e-11
Identity = 35/77 (45.45%), Postives = 55/77 (71.43%), Query Frame = -3
Query:  343 TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAER-EGLSFIETSALEAINVEKAFQTILSEI 570
            ++F +V  W++++R +A SNIV ++IGNK+DL  LR V+  +AQS AE  + L  IETSA ++ NVE+AF  + +E+
Sbjct:  104 SSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 180          
The following BLAST results are available for this feature:
BLAST of CB304830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
RB43L_HUMAN9.685e-1145.45Putative Rab-43-like protein ENSP00000330714 OS=Ho... [more]
RAB8A_PONAB9.685e-1136.56Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8... [more]
RAB8A_MACFA9.685e-1136.56Ras-related protein Rab-8A OS=Macaca fascicularis ... [more]
RAB8A_HUMAN9.685e-1136.56Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8... [more]
RAB8A_CANFA9.685e-1136.56Ras-related protein Rab-8A OS=Canis familiaris GN=... [more]
RAB5A_PIG9.685e-1144.00Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A ... [more]
RAB5A_MOUSE9.685e-1144.00Ras-related protein Rab-5A OS=Mus musculus GN=Rab5... [more]
RAB43_HUMAN9.685e-1145.45Ras-related protein Rab-43 OS=Homo sapiens GN=RAB4... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_F05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_F05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304830 ID=CB304830; Name=CB304830; organism=Citrus sinensis; type=EST; length=575bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCAAAAGTAATTCTGATAT
CACAACAACAAATGAGGAGAATAATTCAAATTTGACATTGTTAACAACAA
ATAATAAAAGCTTAAACAATAAACCATTGAGAGAATGAAAGATTTAACTT
GGAAGCCCGACACGACAAAATGGGAAGAAATTGAGATAAACAAAGAAGAC
AGACCCATCTTTAGGATGAAAAGCAACAAGGTTTCTTTGTGTTGGCCTCT
GATGCCCCTCCTACTACGATAGTCTGTCCTTCTTTGATGTTTGAAGGAGC
TGGCTCCCCTGAAGAGAGGGACTTCTTGCTGATTATCCGGTATATCTCTG
AGAGAATTGTCTGGAAAGCCTTCTCGACATTTATTGCTTCAAGAGCTGAG
GTTTCAATGAAGGAAAGCCCTTCTCTCTCAGCATAGCTTTGGGCATCCTC
TGTGGCAACAGCTCGGAGGTGTTTCAGATCAGTCTTATTGCCAATCATCA
TGATCACAATGTTGGAGTCTGCGTGGTCCCTCAGTTCCTTCAGCCATCGG
CTCACATTTTCAAATGTTGTTGGTT
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