CB304830

Overview
NameCB304830
Unique NameCB304830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.004e-20
Identity = 43/87 (49.43%), Postives = 68/87 (78.16%), Query Frame = -3
Query:  310 TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSS 570
            TTFE+V RWL EL+ H+D+ +  M++GNK DL+++RAV+ E+ ++ AE EGL F+ETSAL++ NV+ AF+ ++ +IY  +S+K L+S
Sbjct:   98 TTFESVGRWLDELKIHSDTTVARMLVGNKCDLENIRAVSVEEGKALAEEEGLFFVETSALDSTNVKTAFEMVILDIYNNVSRKQLNS 184          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: YPT31_YEAST (GTP-binding protein YPT31/YPT8 OS=Saccharomyces cerevisiae GN=YPT31 PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 2.543e-19
Identity = 42/98 (42.86%), Postives = 70/98 (71.43%), Query Frame = -3
Query:  277 TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEG 570
            +++EN + WL ELR++AD N+ + +IGNK+DL HLRAV TE+++++A+   L F ETSAL + NV+KAF+ +++ IY+ +SK  +  G+ + +    G
Sbjct:   99 SSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSANGNANG 196          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.663e-19
Identity = 41/82 (50.00%), Postives = 66/82 (80.49%), Query Frame = -3
Query:  322 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK 567
            +F+NV+RWL ELR+ A+ +I+IMM+GNK+DL+  R V T++AQ++AE   +SF+ETSAL + NV ++F+ +L++IY ++S K
Sbjct:   97 SFKNVTRWLNELREMAEQDILIMMVGNKSDLEMSREVPTKEAQAFAESNKISFLETSALNSTNVNQSFERLLTDIYHLVSSK 178          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: YPT32_YEAST (GTP-binding protein YPT32/YPT11 OS=Saccharomyces cerevisiae GN=YPT32 PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 2.811e-18
Identity = 47/124 (37.90%), Postives = 79/124 (63.71%), Query Frame = -3
Query:  223 TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNI-----KEGQTIVVGGASEANTKKP---CC 570
            +++EN + WL ELR++AD N+ + +IGNK+DL HLRAV T++A+++A    + F ETSAL + NV+KAF+ ++  I++++SK  +       +N+      +G TI +  A + + KK    CC
Sbjct:   99 SSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSKHQVDLSGSGTNNMGSNGAPKGPTISLTPAPKEDKKKKSSNCC 222          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.180e-18
Identity = 50/128 (39.06%), Postives = 72/128 (56.25%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIIS-------------KKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 567
            TF +++ WL++ R HA+ N+ IM+IGNK DL H RAV TE+ + +A+  GL F+ETSA  A NVE+AF     EIY+ I              K     G   P  +K G+    GGA+++++   CC
Sbjct:   93 TFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNESYGIKVGYGGGNAGPQTVKPGE----GGAAKSSS---CC 213          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.543e-16
Identity = 48/128 (37.50%), Postives = 66/128 (51.56%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIIS-------------KKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 567
            TF +++ WL++ R HA+ N+ IM+IGNK DL H RAV TE+ + +A+  GL F+ETSA  A NVE+AF     EIY+ I              K    +G   P   K G+        +A     CC
Sbjct:   93 TFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNESYGIKVGYGAGNAGPQAAKPGE-------GDARKSSSCC 213          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.862e-16
Identity = 48/121 (39.67%), Postives = 69/121 (57.02%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPA------PSNIKEGQTIVVGGASEANTKKPCC 567
            TF +++ WL++ R H++SN+VIM+IGNK+DL+  R V  E+ +++A   GL F+ETSA  A NVE+AF     EIY+ I          A      P +    Q++ VGG S  N    CC
Sbjct:   93 TFNHLTTWLEDARQHSNSNMVIMLIGNKSDLEARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAFINTAKEIYQKIQDGVFDINNEANGIKIGPQHSPASQSLNVGG-SGGNQGGNCC 212          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.909e-15
Identity = 48/116 (41.38%), Postives = 70/116 (60.34%), Query Frame = -3
Query:  235 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEG-----QTIVVGGASEANTK 567
            TF +++ WL++ R H+ SN+VIM+IGNK+DL+  R V  E+ +++A   GL F+ETSA  A NVE+AF     EIYR I ++ L       + IK G      T V   AS+ N++
Sbjct:   93 TFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI-QQGLFDVHNEANGIKIGPQQSISTSVGPSASQRNSR 207          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.482e-15
Identity = 44/117 (37.61%), Postives = 66/117 (56.41%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTI--VVGGASEANTKKPCC 567
            TF +++ WL++ R HA++N+ IM++GNK DL H RAV+ E+ + +A+  GL F+E SA  A NVE+AF      IY+ I          +   IK G  +    GGA  ++    CC
Sbjct:   93 TFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSNES-YGIKVGYVVPGQSGGAGSSSQGGGCC 208          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.465e-15
Identity = 38/81 (46.91%), Postives = 56/81 (69.14%), Query Frame = -3
Query:  325 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISK 567
            TF +++ WL++ R H+ SN+VIM+IGNK+DL+  R V  E+ +++A   GL F+ETSA  A NVE+A+     EIYR I +
Sbjct:   93 TFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAYINTAKEIYRKIQQ 173          
The following BLAST results are available for this feature:
BLAST of CB304830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
ARA1_ARATH3.004e-2049.43Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]
YPT31_YEAST2.543e-1942.86GTP-binding protein YPT31/YPT8 OS=Saccharomyces ce... [more]
RB11C_DICDI9.663e-1950.00Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
YPT32_YEAST2.811e-1837.90GTP-binding protein YPT32/YPT11 OS=Saccharomyces c... [more]
YPTC4_CHLRE8.180e-1839.06GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]
YPTV4_VOLCA1.543e-1637.50GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
RAB2_LYMST5.862e-1639.67Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=... [more]
RAB2B_HUMAN2.909e-1541.38Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
RAB2A_MAIZE6.482e-1537.61Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A P... [more]
RAB2B_MOUSE8.465e-1546.91Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_F05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_F05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304830 ID=CB304830; Name=CB304830; organism=Citrus sinensis; type=EST; length=575bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCAAAAGTAATTCTGATAT
CACAACAACAAATGAGGAGAATAATTCAAATTTGACATTGTTAACAACAA
ATAATAAAAGCTTAAACAATAAACCATTGAGAGAATGAAAGATTTAACTT
GGAAGCCCGACACGACAAAATGGGAAGAAATTGAGATAAACAAAGAAGAC
AGACCCATCTTTAGGATGAAAAGCAACAAGGTTTCTTTGTGTTGGCCTCT
GATGCCCCTCCTACTACGATAGTCTGTCCTTCTTTGATGTTTGAAGGAGC
TGGCTCCCCTGAAGAGAGGGACTTCTTGCTGATTATCCGGTATATCTCTG
AGAGAATTGTCTGGAAAGCCTTCTCGACATTTATTGCTTCAAGAGCTGAG
GTTTCAATGAAGGAAAGCCCTTCTCTCTCAGCATAGCTTTGGGCATCCTC
TGTGGCAACAGCTCGGAGGTGTTTCAGATCAGTCTTATTGCCAATCATCA
TGATCACAATGTTGGAGTCTGCGTGGTCCCTCAGTTCCTTCAGCCATCGG
CTCACATTTTCAAATGTTGTTGGTT
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