CB304834

Overview
NameCB304834
Unique NameCB304834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig84 contig Csv1_Contig84:517..1151. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_GEMAT (60 kDa chaperonin OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=groL PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.356e-30
Identity = 73/144 (50.69%), Postives = 104/144 (72.22%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKD-KLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTT-GYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATE E++++K R+EDA +AT AA+EEGIVPGGG AL+  + HV  +KD K+ + DE++G  IV++A+  P  +I  NA           + ++ T+ GYNA+TD YE+++QAGVIDP KVTR ALQNAAS+AG++L T+A+
Sbjct:  381 VGAATEAEMKEKKARVEDALHATRAAVEEGIVPGGGVALIR-AQHV--LKDVKVAERDEQIGVDIVRRAIEEPLRMIVQNAGGEGSIVVEKIRTAKETSFGYNALTDVYEDLVQAGVIDPTKVTRTALQNAASIAGLLLTTEAL 521          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_ODOSI (60 kDa chaperonin, chloroplastic OS=Odontella sinensis GN=groL PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.771e-30
Identity = 69/142 (48.59%), Postives = 91/142 (64.08%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG  TETE++D+KLR+EDA NAT AA+EEGIVPGGGA L HL++++          DE +GA I+ +A+VAP   IA NA           +  E+  GYNA  + + NM   G++DPAKVTR  LQNA S+A M+L T+ I
Sbjct:  381 VGAVTETEMKDKKLRLEDAINATRAAVEEGIVPGGGATLAHLAENLLTWAKINLKEDELIGAMIISRAIVAPLKRIAENAGINGPVIIEKVQQQEFEIGYNAAKNVFGNMYDEGIVDPAKVTRSGLQNATSIASMILTTECI 522          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_EXIS2 (60 kDa chaperonin OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=groL PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.771e-30
Identity = 75/142 (52.82%), Postives = 93/142 (65.49%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETEL++RKLRIEDA NAT AA+EEGIV GGG A +H++  V +I   +   DE  G  IV +AL AP   IA NA           K      GYNA TD+Y +M++ G++DPAKVTR ALQNAASV+ M L T+A+
Sbjct:  379 VGAATETELKERKLRIEDALNATRAAVEEGIVAGGGTAFIHVTKAVESIL-AVTTGDEATGVNIVLRALEAPLRQIAENAGQEGSVIVERLKHEAQGMGYNAATDEYVDMIETGIVDPAKVTRSALQNAASVSAMFLTTEAV 519          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_EUBE2 (60 kDa chaperonin OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=groL PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.771e-30
Identity = 71/142 (50.00%), Postives = 97/142 (68.31%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETE+++ KLR+EDA NAT AA+EEG+V GGG+A +H S  V  +   L   DE++GA I+ KAL AP   IA+NA           ++SE  TG++A  ++Y NM+ AG++DPAKVTR ALQNA SVA  +L T+++
Sbjct:  379 VGAATETEMKEAKLRMEDALNATRAAVEEGVVSGGGSAYIHASKKVAELVKTLS-GDEKIGAQIILKALEAPLFHIAYNAGLEGAVIINKVRESEVGTGFDAYKEEYVNMIDAGILDPAKVTRSALQNATSVASTLLTTESV 519          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_ALKMQ (60 kDa chaperonin OS=Alkaliphilus metalliredigens (strain QYMF) GN=groL PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.313e-30
Identity = 72/143 (50.35%), Postives = 98/143 (68.53%), Query Frame = -3
Query:  212 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDA--DERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQA 634
            VG ATETEL++RKLRIEDA NAT AA+EEGIV GGG ALV++   +PA++  LE +  DE+ G  I+++AL  P   IA NA             S+   GY+ + +KY NM++AG++DP KVTR ALQNAAS++ M+L T++
Sbjct:  379 VGAATETELKERKLRIEDALNATRAAVEEGIVAGGGTALVNV---IPAVEALLEGSQGDEKTGIQIIRRALEEPLRQIAENAGLEGSVIVNKVMSSDKGIGYDVLNNKYVNMIEAGIVDPTKVTRSALQNAASISAMLLTTES 518          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_CYAPA (60 kDa chaperonin, cyanelle OS=Cyanophora paradoxa GN=groL-A PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.021e-30
Identity = 70/142 (49.30%), Postives = 91/142 (64.08%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETE++D+KLR+EDA NAT AA+EEGIVPGGG  L HL+  +        + +E +G  IV ++L AP   I  NA           KD  +  GYNA   ++ +M +AG++DPAKVTR  LQNAAS+AGMVL T+ I
Sbjct:  379 VGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAIELENWVQSNLEHEELIGGMIVARSLTAPLKRIVENAGQNGAVIAEQVKDKPFNIGYNAANAQFVDMFEAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_BACLD (60 kDa chaperonin OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=groL PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.021e-30
Identity = 75/142 (52.82%), Postives = 94/142 (66.20%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETEL++RKLRIEDA N+T AA+EEGIV GGG ALV++ + V A++    + DE  G  IV +AL  P   IAHNA           K+ E   GYNA T ++ NM+  G++DP KVTR ALQNAASVA M L T+A+
Sbjct:  379 VGAATETELKERKLRIEDALNSTRAAVEEGIVSGGGTALVNVYNKVAALE---AEGDELTGINIVLRALEEPIRQIAHNAGLEGSVIVERLKNEEIGVGYNAATGEWVNMIDKGIVDPTKVTRSALQNAASVAAMFLTTEAV 517          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH601_SYNS9 (60 kDa chaperonin 1 OS=Synechococcus sp. (strain CC9902) GN=groL1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.021e-30
Identity = 74/142 (52.11%), Postives = 89/142 (62.68%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETE++D+KLR+EDA NAT AA+EEGIVPGGG  L HL+  +    +     +E +GA IV  AL AP   IA NA           K      GYNA    Y +ML AG++DPAKVTR  LQNAAS+AGMVL T+ I
Sbjct:  379 VGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPALEEWANGNLSGEELIGANIVAAALTAPLMRIAENAGANGAVVAENVKSRSNNEGYNAANGDYVDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_DICT6 (60 kDa chaperonin OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=groL PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.946e-30
Identity = 71/143 (49.65%), Postives = 99/143 (69.23%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKD-KLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATE EL+++K RIEDA +AT AA+EEGIVPGGG AL+     + A+ D K+++ DER+G  IV+++L  P  LIA+NA           K+ +   GY+A  D++ NM +AG++DPAKVTR ALQNAAS+A +VL T+ +
Sbjct:  381 VGAATEVELKEKKHRIEDALSATKAAVEEGIVPGGGVALLRT---IKALDDVKVDNEDERIGVEIVRRSLDVPLKLIANNAGKEGSIIAEKVKEMDGPMGYDAANDRFVNMFEAGIVDPAKVTRSALQNAASIAALVLTTEGL 520          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH601_CHLCV (60 kDa chaperonin 1 OS=Chlamydophila caviae GN=groL1 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.946e-30
Identity = 68/142 (47.89%), Postives = 96/142 (67.61%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATE E++++K R++DA++AT AA+EEGI+PGGG ALV     + A    L + DE++GA IV KAL AP   IA NA                + GY+A+ D Y +M++AG++DP KVTRCAL++AASVAG++L T+A+
Sbjct:  381 VGAATEIEMKEKKDRVDDAQHATLAAVEEGILPGGGTALVRCIPTLEAFIPILTNEDEQIGARIVLKALSAPLKQIAANAGKEGAIICQQVLSRSSSEGYDALRDAYTDMIEAGILDPTKVTRCALESAASVAGLLLTTEAL 522          
The following BLAST results are available for this feature:
BLAST of CB304834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_GEMAT1.356e-3050.6960 kDa chaperonin OS=Gemmatimonas aurantiaca (stra... [more]
CH60_ODOSI1.771e-3048.5960 kDa chaperonin, chloroplastic OS=Odontella sine... [more]
CH60_EXIS21.771e-3052.8260 kDa chaperonin OS=Exiguobacterium sibiricum (st... [more]
CH60_EUBE21.771e-3050.0060 kDa chaperonin OS=Eubacterium eligens (strain A... [more]
CH60_ALKMQ2.313e-3050.3560 kDa chaperonin OS=Alkaliphilus metalliredigens ... [more]
CH60_CYAPA3.021e-3049.3060 kDa chaperonin, cyanelle OS=Cyanophora paradoxa... [more]
CH60_BACLD3.021e-3052.8260 kDa chaperonin OS=Bacillus licheniformis (strai... [more]
CH601_SYNS93.021e-3052.1160 kDa chaperonin 1 OS=Synechococcus sp. (strain C... [more]
CH60_DICT63.946e-3049.6560 kDa chaperonin OS=Dictyoglomus thermophilum (st... [more]
CH601_CHLCV3.946e-3047.8960 kDa chaperonin 1 OS=Chlamydophila caviae GN=gro... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_F10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_F10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304834 ID=CB304834; Name=CB304834; organism=Citrus sinensis; type=EST; length=636bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAAAAAGACACGATTTTA
TATCAATTAAGTAAAACTTGTCTTTTTCAGTTCACCGCAATAAAACCACT
CTTTCATCTATAAAACTCCTAACTAAATCTGGAGAGTCCTAAAGATTACA
CCATAAGACCTTGTGGCGGAGCGGCTACCGGAGTTTTGGGCTTTGGCTTC
TCCACGACAATAGCCTGAGTGGGCAGGACCATTCCTGCAACTGAAGCCGC
ATTCTGCAATGCACATCTTGTCACCTTTGCAGGATCAATAACTCCAGCCT
GAAGCATGTTCTCATACTTGTCTGTCATTGCATTGTAACCAGTCGTCCAT
TCACTATCTTTCACCTTCTCCACAACAACCTCACCTTCAACTCCAGCATT
GTGAGCTATCAGTGATGCAGGTGCTACCAGTGCCTTCTGCACAATGGCAG
CACCTAATCGCTCATCTGCATCTTCAAGCTTGTCCTTGATAGCAGGAACA
TGATCAGACAGATGAACCAGAGCAGCACCACCACCAGGAACAATACCTTC
CTCTATGGCTGCAAAAGTTGCATTCTTGGCATCTTCAATACGGAGTTTAC
GGTCCTCAAGCTCAGTTTCTGTGGCANNNCCAACTC
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