CB304835
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: ROK1_KLULA (ATP-dependent RNA helicase ROK1 OS=Kluyveromyces lactis GN=ROK1 PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.168e-24 Identity = 59/106 (55.66%), Postives = 72/106 (67.92%), Query Frame = -2 Query: 357 TDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKL---------KGKKHRPRRESISTKPK 647 TDV+ARG+DFKGVN VINYD P S AY+HRIGRTGR GRSG+AIT YT+ D ++ I N+MK SGCEV W+ + + KGK H R++ IST PK Sbjct: 440 TDVLARGVDFKGVNLVINYDVPRSAQAYVHRIGRTGRGGRSGKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKISSMSKREKESLKKGKGHVERKQ-ISTVPK 544
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DDX52_DICDI (Probable ATP-dependent RNA helicase ddx52 OS=Dictyostelium discoideum GN=ddx52 PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.526e-24 Identity = 60/102 (58.82%), Postives = 72/102 (70.59%), Query Frame = -2 Query: 360 TDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLKGKKHRP------RRESISTKP 647 T+++ARGMDFKGVN VIN+DFP + A+YIHRIGRTGRAGR G A TLYT+ D P L I + MK SG VP W+L L K++GKK + RES ST P Sbjct: 497 TELMARGMDFKGVNFVINFDFPHTLASYIHRIGRTGRAGRPGVAYTLYTDADTPMLPTIVHAMKQSGSHVPDWMLNL-KVQGKKKQQYRLKGVERESFSTIP 597
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: ROK1_DEBHA (ATP-dependent RNA helicase ROK1 OS=Debaryomyces hansenii GN=ROK1 PE=3 SV=2) HSP 1 Score: 110.153 bits (274), Expect = 9.889e-24 Identity = 56/105 (53.33%), Postives = 72/105 (68.57%), Query Frame = -2 Query: 357 TDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCE--VPSWILTLPKLKG------KKHRPRRESISTKPK 647 TDVIARG+DFKGVN VINYD P S AY+HRIGRTGR G++G+A+T +T++D ++ I N+MK SGCE W+ + KL KKH +R+ IST PK Sbjct: 418 TDVIARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKAGKAVTFFTKEDDKAVKPIINVMKQSGCESGYSGWLEDMHKLSKNEKKDVKKHEIKRKQISTVPK 522
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: ROK1_VANPO (ATP-dependent RNA helicase ROK1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=ROK1 PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.687e-23 Identity = 55/106 (51.89%), Postives = 73/106 (68.87%), Query Frame = -2 Query: 357 TDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKL---------KGKKHRPRRESISTKPK 647 TDV+ARG+DFKGVN VINYD P + AY+HRIGRTGR GRSG+A+T YT++D ++ I N+MK SG E+ W+ + K+ KG+ H R++ IST PK Sbjct: 438 TDVLARGVDFKGVNLVINYDVPRTAQAYVHRIGRTGRGGRSGKAVTFYTKEDSIAIKPIINVMKQSGSEISEWMEKVSKMTKKEKELVKKGRAHSERKQ-ISTVPK 542
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: ROK1_CRYNE (ATP-dependent RNA helicase ROK1 OS=Cryptococcus neoformans GN=ROK1 PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.203e-23 Identity = 53/104 (50.96%), Postives = 76/104 (73.08%), Query Frame = -2 Query: 354 TDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPK-LKGKKHR-----PRRESISTKPKD 647 T+V+ARGMDF+GV VINYDFP + +YIHRIGRTGRAGR G+AIT + +D P+LR IAN++++SGC VP ++L + K K +K + P+R+++ +D Sbjct: 479 TEVLARGMDFRGVKVVINYDFPQTVPSYIHRIGRTGRAGRPGKAITFFNIEDGPYLRTIANVLRSSGCPVPEYMLDMKKPTKNEKKKLAKAPPKRKAVGGGGRD 582
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: ROK1_ASHGO (ATP-dependent RNA helicase ROK1 OS=Ashbya gossypii GN=ROK1 PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 3.758e-23 Identity = 55/106 (51.89%), Postives = 71/106 (66.98%), Query Frame = -2 Query: 357 TDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKL---------KGKKHRPRRESISTKPK 647 TDV+ARG+DFKG+N VINYD P S AY+HRIGRTGR GR G A+T +T+ D ++ I N+MK SGCEV +W+ + K+ KGK R++ IST PK Sbjct: 431 TDVLARGIDFKGINLVINYDVPRSAQAYVHRIGRTGRGGRKGTAVTFFTKQDAIAVKPIVNVMKQSGCEVAAWMENIAKMTKREKEMIKKGKAFVDRKQ-ISTVPK 535
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: ROK1_YARLI (ATP-dependent RNA helicase ROK1 OS=Yarrowia lipolytica GN=ROK1 PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 4.908e-23 Identity = 53/101 (52.48%), Postives = 73/101 (72.28%), Query Frame = -2 Query: 363 TDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLKGK-----KHRP-RRESISTK 647 TDV+ARG+DF+G+N VINYD P S +Y+HRIGRTGRAGR G+A+T +T++D ++ + N+MK SG EVP W+ L L K K+RP +R+ IST+ Sbjct: 421 TDVLARGIDFRGINLVINYDVPQSAQSYVHRIGRTGRAGRLGKAVTFFTKEDATNVKVVVNVMKQSGQEVPDWLNNLAPLTQKERDNIKNRPIKRKKISTQ 521
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: ROK1_LODEL (ATP-dependent RNA helicase ROK1 OS=Lodderomyces elongisporus GN=ROK1 PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.436e-22 Identity = 55/104 (52.88%), Postives = 69/104 (66.35%), Query Frame = -2 Query: 360 TDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCE--VPSWILTLPKLKG------KKHRPRRESISTKP 647 TDV+ARG+DFKGVN VINYD P S AY+HRIGRTGR GRSG+A+T +T++D ++ I N+MK SGC + W+ L KL K H R+ IST P Sbjct: 423 TDVLARGVDFKGVNMVINYDVPQSAQAYVHRIGRTGRGGRSGKAVTFFTKEDDKAVKPIINVMKQSGCTDGLSDWMEDLGKLSKREKRAVKTHEIERKKISTVP 526
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: ROK1_CANAL (ATP-dependent RNA helicase CHR1 OS=Candida albicans GN=CHR1 PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.436e-22 Identity = 53/105 (50.48%), Postives = 71/105 (67.62%), Query Frame = -2 Query: 357 TDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCE--VPSWILTLPKLKGKK------HRPRRESISTKPK 647 TDV+ARG+DFKGVN VINYD P S AY+HRIGRTGR G++G+A+T +T++D ++ I N+MK SGC W+ + KL K+ H +R+ IST PK Sbjct: 435 TDVLARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKAGKAVTFFTKEDDKAIKPILNVMKQSGCNDGYSQWMEDMGKLSKKEKKQIKTHEIQRKKISTVPK 539
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: ROK1_PICST (ATP-dependent RNA helicase ROK1 OS=Pichia stipitis GN=ROK1 PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.579e-21 Identity = 53/105 (50.48%), Postives = 71/105 (67.62%), Query Frame = -2 Query: 357 TDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEV--PSWILTLPKL-----KGKKHRP-RRESISTKPK 647 TDV+ARG+DFKGVN VINYD P + AY+HRIGRTGR G++G A+T +T++D ++ I N+MK SGCE W+ + K+ K KH+ R+ IST PK Sbjct: 425 TDVLARGVDFKGVNMVINYDVPQTAQAYVHRIGRTGRGGKAGRAVTFFTKEDDQAVKPIINVMKQSGCEAGFSGWMENMTKMSKNEKKKVKHKEIDRKDISTVPK 529 The following BLAST results are available for this feature:
BLAST of CB304835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 351
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CB304835 ID=CB304835; Name=CB304835; organism=Citrus sinensis; type=EST; length=651bpback to top |