CB304835

Overview
NameCB304835
Unique NameCB304835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304835_ssr36 microsatellite CB304835_ssr36:36..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: ROK1_KLULA (ATP-dependent RNA helicase ROK1 OS=Kluyveromyces lactis GN=ROK1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.168e-24
Identity = 59/106 (55.66%), Postives = 72/106 (67.92%), Query Frame = -2
Query:  357 TDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKL---------KGKKHRPRRESISTKPK 647
            TDV+ARG+DFKGVN VINYD P S  AY+HRIGRTGR GRSG+AIT YT+ D   ++ I N+MK SGCEV  W+  +  +         KGK H  R++ IST PK
Sbjct:  440 TDVLARGVDFKGVNLVINYDVPRSAQAYVHRIGRTGRGGRSGKAITFYTKQDSLAIKPIINVMKQSGCEVSEWMQKISSMSKREKESLKKGKGHVERKQ-ISTVPK 544          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DDX52_DICDI (Probable ATP-dependent RNA helicase ddx52 OS=Dictyostelium discoideum GN=ddx52 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.526e-24
Identity = 60/102 (58.82%), Postives = 72/102 (70.59%), Query Frame = -2
Query:  360 TDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLKGKKHRP------RRESISTKP 647
            T+++ARGMDFKGVN VIN+DFP + A+YIHRIGRTGRAGR G A TLYT+ D P L  I + MK SG  VP W+L L K++GKK +        RES ST P
Sbjct:  497 TELMARGMDFKGVNFVINFDFPHTLASYIHRIGRTGRAGRPGVAYTLYTDADTPMLPTIVHAMKQSGSHVPDWMLNL-KVQGKKKQQYRLKGVERESFSTIP 597          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: ROK1_DEBHA (ATP-dependent RNA helicase ROK1 OS=Debaryomyces hansenii GN=ROK1 PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 9.889e-24
Identity = 56/105 (53.33%), Postives = 72/105 (68.57%), Query Frame = -2
Query:  357 TDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCE--VPSWILTLPKLKG------KKHRPRRESISTKPK 647
            TDVIARG+DFKGVN VINYD P S  AY+HRIGRTGR G++G+A+T +T++D   ++ I N+MK SGCE     W+  + KL        KKH  +R+ IST PK
Sbjct:  418 TDVIARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKAGKAVTFFTKEDDKAVKPIINVMKQSGCESGYSGWLEDMHKLSKNEKKDVKKHEIKRKQISTVPK 522          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: ROK1_VANPO (ATP-dependent RNA helicase ROK1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=ROK1 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.687e-23
Identity = 55/106 (51.89%), Postives = 73/106 (68.87%), Query Frame = -2
Query:  357 TDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKL---------KGKKHRPRRESISTKPK 647
            TDV+ARG+DFKGVN VINYD P +  AY+HRIGRTGR GRSG+A+T YT++D   ++ I N+MK SG E+  W+  + K+         KG+ H  R++ IST PK
Sbjct:  438 TDVLARGVDFKGVNLVINYDVPRTAQAYVHRIGRTGRGGRSGKAVTFYTKEDSIAIKPIINVMKQSGSEISEWMEKVSKMTKKEKELVKKGRAHSERKQ-ISTVPK 542          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: ROK1_CRYNE (ATP-dependent RNA helicase ROK1 OS=Cryptococcus neoformans GN=ROK1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.203e-23
Identity = 53/104 (50.96%), Postives = 76/104 (73.08%), Query Frame = -2
Query:  354 TDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPK-LKGKKHR-----PRRESISTKPKD 647
            T+V+ARGMDF+GV  VINYDFP +  +YIHRIGRTGRAGR G+AIT +  +D P+LR IAN++++SGC VP ++L + K  K +K +     P+R+++    +D
Sbjct:  479 TEVLARGMDFRGVKVVINYDFPQTVPSYIHRIGRTGRAGRPGKAITFFNIEDGPYLRTIANVLRSSGCPVPEYMLDMKKPTKNEKKKLAKAPPKRKAVGGGGRD 582          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: ROK1_ASHGO (ATP-dependent RNA helicase ROK1 OS=Ashbya gossypii GN=ROK1 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.758e-23
Identity = 55/106 (51.89%), Postives = 71/106 (66.98%), Query Frame = -2
Query:  357 TDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKL---------KGKKHRPRRESISTKPK 647
            TDV+ARG+DFKG+N VINYD P S  AY+HRIGRTGR GR G A+T +T+ D   ++ I N+MK SGCEV +W+  + K+         KGK    R++ IST PK
Sbjct:  431 TDVLARGIDFKGINLVINYDVPRSAQAYVHRIGRTGRGGRKGTAVTFFTKQDAIAVKPIVNVMKQSGCEVAAWMENIAKMTKREKEMIKKGKAFVDRKQ-ISTVPK 535          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: ROK1_YARLI (ATP-dependent RNA helicase ROK1 OS=Yarrowia lipolytica GN=ROK1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.908e-23
Identity = 53/101 (52.48%), Postives = 73/101 (72.28%), Query Frame = -2
Query:  363 TDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLKGK-----KHRP-RRESISTK 647
            TDV+ARG+DF+G+N VINYD P S  +Y+HRIGRTGRAGR G+A+T +T++D   ++ + N+MK SG EVP W+  L  L  K     K+RP +R+ IST+
Sbjct:  421 TDVLARGIDFRGINLVINYDVPQSAQSYVHRIGRTGRAGRLGKAVTFFTKEDATNVKVVVNVMKQSGQEVPDWLNNLAPLTQKERDNIKNRPIKRKKISTQ 521          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: ROK1_LODEL (ATP-dependent RNA helicase ROK1 OS=Lodderomyces elongisporus GN=ROK1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.436e-22
Identity = 55/104 (52.88%), Postives = 69/104 (66.35%), Query Frame = -2
Query:  360 TDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCE--VPSWILTLPKLKG------KKHRPRRESISTKP 647
            TDV+ARG+DFKGVN VINYD P S  AY+HRIGRTGR GRSG+A+T +T++D   ++ I N+MK SGC   +  W+  L KL        K H   R+ IST P
Sbjct:  423 TDVLARGVDFKGVNMVINYDVPQSAQAYVHRIGRTGRGGRSGKAVTFFTKEDDKAVKPIINVMKQSGCTDGLSDWMEDLGKLSKREKRAVKTHEIERKKISTVP 526          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: ROK1_CANAL (ATP-dependent RNA helicase CHR1 OS=Candida albicans GN=CHR1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.436e-22
Identity = 53/105 (50.48%), Postives = 71/105 (67.62%), Query Frame = -2
Query:  357 TDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCE--VPSWILTLPKLKGKK------HRPRRESISTKPK 647
            TDV+ARG+DFKGVN VINYD P S  AY+HRIGRTGR G++G+A+T +T++D   ++ I N+MK SGC      W+  + KL  K+      H  +R+ IST PK
Sbjct:  435 TDVLARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKAGKAVTFFTKEDDKAIKPILNVMKQSGCNDGYSQWMEDMGKLSKKEKKQIKTHEIQRKKISTVPK 539          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: ROK1_PICST (ATP-dependent RNA helicase ROK1 OS=Pichia stipitis GN=ROK1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.579e-21
Identity = 53/105 (50.48%), Postives = 71/105 (67.62%), Query Frame = -2
Query:  357 TDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEV--PSWILTLPKL-----KGKKHRP-RRESISTKPK 647
            TDV+ARG+DFKGVN VINYD P +  AY+HRIGRTGR G++G A+T +T++D   ++ I N+MK SGCE     W+  + K+     K  KH+   R+ IST PK
Sbjct:  425 TDVLARGVDFKGVNMVINYDVPQTAQAYVHRIGRTGRGGKAGRAVTFFTKEDDQAVKPIINVMKQSGCEAGFSGWMENMTKMSKNEKKKVKHKEIDRKDISTVPK 529          
The following BLAST results are available for this feature:
BLAST of CB304835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 351
Match NameE-valueIdentityDescription
ROK1_KLULA1.168e-2455.66ATP-dependent RNA helicase ROK1 OS=Kluyveromyces l... [more]
DDX52_DICDI1.526e-2458.82Probable ATP-dependent RNA helicase ddx52 OS=Dicty... [more]
ROK1_DEBHA9.889e-2453.33ATP-dependent RNA helicase ROK1 OS=Debaryomyces ha... [more]
ROK1_VANPO1.687e-2351.89ATP-dependent RNA helicase ROK1 OS=Vanderwaltozyma... [more]
ROK1_CRYNE2.203e-2350.96ATP-dependent RNA helicase ROK1 OS=Cryptococcus ne... [more]
ROK1_ASHGO3.758e-2351.89ATP-dependent RNA helicase ROK1 OS=Ashbya gossypii... [more]
ROK1_YARLI4.908e-2352.48ATP-dependent RNA helicase ROK1 OS=Yarrowia lipoly... [more]
ROK1_LODEL2.436e-2252.88ATP-dependent RNA helicase ROK1 OS=Lodderomyces el... [more]
ROK1_CANAL2.436e-2250.48ATP-dependent RNA helicase CHR1 OS=Candida albican... [more]
ROK1_PICST1.579e-2150.48ATP-dependent RNA helicase ROK1 OS=Pichia stipitis... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_F11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_F11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304835 ID=CB304835; Name=CB304835; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAACAATAAATAAATAAAT
CATCCTCAAACAAGTAAATGATTCCAGAATTTTTCTGGTCCTATGAGAAT
ATAAGGGATTTTTTGTTCTGTGGTTGTATCACTAGCTTATGTAAAACCGT
GGAAATTTATGCTTCTTTTATGGATGGTGTTGGCCTTGTAGCTGGCTGGA
TGTCAAAAATAGATTGAACCAATGAGAACCCAGACAGTGTCTGGAACTGG
AACAGTACTAGTTTCTATGGACTTGATAAAGGAAACAAATAAAGCCAACA
ACAAAAAACTCTTTCAAGAAAAATGAAGGTGATTTGCAGCTTTACTCTTC
ACCATCTTTTGGTTTGGTTGAAATTGATTCTCTTCGTGGCCGATGCTTCT
TACCCTTCAGTTTTGGCAAGGTCAAGATCCAGGATGGAACCTCGCAACCA
GAGGCTTTCATTAAATTAGCTATGTTACGCAAAAATGGAATATCGTCTTC
AGTGTAAAGTGTTATCGCTTCTCCACTCCTACCTGCCCTGCCAGTGCGAC
CTATTCTGTGAATGTATGCAGCACCAGAATCGGGGAAGTCATAATTAATC
ACGCAGTTTACACCCTTGAAATCCATGCCTCGGGCAATAACATCAGTGGC
A
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