CB304835

Overview
NameCB304835
Unique NameCB304835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304835_ssr36 microsatellite CB304835_ssr36:36..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: RH11_ARATH (DEAD-box ATP-dependent RNA helicase 11 OS=Arabidopsis thaliana GN=RH11 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.439e-14
Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = -2
Query:  426 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWI 650
            ATDV ARG+D   V  V+N+D P+    Y+HRIGRTGRAG+SG A   + E++    R++A LM+ +  EVP W+
Sbjct:  464 ATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEANQEVPEWL 538          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DBP2_CANGA (ATP-dependent RNA helicase DBP2 OS=Candida glabrata GN=DBP2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.439e-14
Identity = 35/76 (46.05%), Postives = 53/76 (69.74%), Query Frame = -2
Query:  423 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWIL 650
            ATDV ARG+D KG+N V+NYD P +   Y+HRIGRTGRAG +G AI+ +TED+     ++ ++M+ +   +P  ++
Sbjct:  413 ATDVAARGIDVKGINFVVNYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEDNKSLGASLISIMREAKQNIPEELM 488          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: RH40_ARATH (DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana GN=RH40 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.103e-14
Identity = 35/72 (48.61%), Postives = 48/72 (66.67%), Query Frame = -2
Query:  435 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVP 650
            ATDV ARG+D K +  VINYDFP     Y+HRIGRTGRAG +G A T +TE D  +  ++  +++ +  +VP
Sbjct:  735 ATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPDLIKVLEGANQQVP 806          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: RH20_ORYSJ (DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp. japonica GN=Os01g0197200 PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.103e-14
Identity = 37/71 (52.11%), Postives = 49/71 (69.01%), Query Frame = -2
Query:  438 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEV 650
            ATDV ARG+D K V  VINYDFP S   Y+HRIGRTGRAG  G A T +T  +  F +++ N+++ +G +V
Sbjct:  392 ATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKDLINILEEAGQKV 462          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: RH52A_ORYSJ (DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa subsp. japonica GN=Os06g0602400 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 9.277e-14
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = -2
Query:  423 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWIL 650
            ATDV +RG+D   V  VINYD P S   Y+HRIGRTGRAG++G A   +TE D    + +  LM  +  +VP W++
Sbjct:  407 ATDVASRGLDVPNVAHVINYDLPKSIEDYVHRIGRTGRAGKAGSATAFFTESDHSLAKGLLELMTEAKQDVPDWLV 482          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: RH20_ARATH (DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana GN=RH20 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.277e-14
Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = -2
Query:  438 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEV 650
            ATDV ARG+D K V  VINYDFP S   Y+HRIGRTGRAG  G A T +T  +  F + + N+++ +G +V
Sbjct:  400 ATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKELTNILQEAGQKV 470          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DRS1_MAGGR (ATP-dependent RNA helicase DRS1 OS=Magnaporthe grisea GN=DRS1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.277e-14
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = -2
Query:  423 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWIL 650
            ATD+ +RG+D KGV+ VINY+ P S   Y+HR+GRT RAGRSG AITL  E D   ++      KA G ++ S I+
Sbjct:  556 ATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKAGKAQGAKISSRII 631          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DBP3_ASPCL (ATP-dependent RNA helicase dbp3 OS=Aspergillus clavatus GN=dbp3 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.212e-13
Identity = 43/87 (49.43%), Postives = 54/87 (62.07%), Query Frame = -2
Query:  393 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTL-PKLKGKKH 650
            ATDV ARG+D   V  VIN  FP +   Y+HRIGRTGRAG  G AITL+TE D      + N++KA+  EVP  +L     +K K+H
Sbjct:  394 ATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGRTGRAGAEGRAITLFTETDKAQSGALINVLKAAKQEVPQELLKFGTTVKKKQH 480          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DBP2_CRYNE (ATP-dependent RNA helicase DBP2-A OS=Cryptococcus neoformans GN=DBP2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.212e-13
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = -2
Query:  435 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVP 650
            ATDV +RG+D + +  VINYDFP++   YIHRIGRTGRAGR G + T +T D+    R +  +++ S  ++P
Sbjct:  412 ATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNSKAARELVQILRESKADIP 483          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: RH40_ORYSJ (DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica GN=Os01g0549400 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.582e-13
Identity = 37/100 (37.00%), Postives = 55/100 (55.00%), Query Frame = -2
Query:  351 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLKGKKHRPRRESISTKPKDG 650
            ATDV ARG+D K +  VINYDFP     Y+HRIGRTGRAG +G A T + + D  +  ++  +++ +   VP  +  +    G+  R R    +   + G
Sbjct:  450 ATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTFFCDQDSKYAADLIKILEGANQRVPRDLADMASRGGRGGRKRNRWATRSDRGG 549          
The following BLAST results are available for this feature:
BLAST of CB304835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 351
Match NameE-valueIdentityDescription
RH11_ARATH5.439e-1448.00DEAD-box ATP-dependent RNA helicase 11 OS=Arabidop... [more]
DBP2_CANGA5.439e-1446.05ATP-dependent RNA helicase DBP2 OS=Candida glabrat... [more]
RH40_ARATH7.103e-1448.61DEAD-box ATP-dependent RNA helicase 40 OS=Arabidop... [more]
RH20_ORYSJ7.103e-1452.11DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sa... [more]
RH52A_ORYSJ9.277e-1447.37DEAD-box ATP-dependent RNA helicase 52A OS=Oryza s... [more]
RH20_ARATH9.277e-1452.11DEAD-box ATP-dependent RNA helicase 20 OS=Arabidop... [more]
DRS1_MAGGR9.277e-1450.00ATP-dependent RNA helicase DRS1 OS=Magnaporthe gri... [more]
DBP3_ASPCL1.212e-1349.43ATP-dependent RNA helicase dbp3 OS=Aspergillus cla... [more]
DBP2_CRYNE1.212e-1347.22ATP-dependent RNA helicase DBP2-A OS=Cryptococcus ... [more]
RH40_ORYSJ1.582e-1337.00DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_F11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_F11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304835 ID=CB304835; Name=CB304835; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAACAATAAATAAATAAAT
CATCCTCAAACAAGTAAATGATTCCAGAATTTTTCTGGTCCTATGAGAAT
ATAAGGGATTTTTTGTTCTGTGGTTGTATCACTAGCTTATGTAAAACCGT
GGAAATTTATGCTTCTTTTATGGATGGTGTTGGCCTTGTAGCTGGCTGGA
TGTCAAAAATAGATTGAACCAATGAGAACCCAGACAGTGTCTGGAACTGG
AACAGTACTAGTTTCTATGGACTTGATAAAGGAAACAAATAAAGCCAACA
ACAAAAAACTCTTTCAAGAAAAATGAAGGTGATTTGCAGCTTTACTCTTC
ACCATCTTTTGGTTTGGTTGAAATTGATTCTCTTCGTGGCCGATGCTTCT
TACCCTTCAGTTTTGGCAAGGTCAAGATCCAGGATGGAACCTCGCAACCA
GAGGCTTTCATTAAATTAGCTATGTTACGCAAAAATGGAATATCGTCTTC
AGTGTAAAGTGTTATCGCTTCTCCACTCCTACCTGCCCTGCCAGTGCGAC
CTATTCTGTGAATGTATGCAGCACCAGAATCGGGGAAGTCATAATTAATC
ACGCAGTTTACACCCTTGAAATCCATGCCTCGGGCAATAACATCAGTGGC
A
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