CB304835

Overview
NameCB304835
Unique NameCB304835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: EXP9_STRR6 (Probable ATP-dependent RNA helicase exp9 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=exp9 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.582e-13
Identity = 41/96 (42.71%), Postives = 55/96 (57.29%), Query Frame = -2
Query:  363 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLKGKKHRPRRESISTK 650
            ATDV ARG+D  GV  V NYD P    +Y+HRIGRTGRAG+SG++IT    +++ +L+ I NL K              ++KG K     ES  +K
Sbjct:  295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQIIENLTK-------------KRMKGLKPASVEESFQSK 377          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: EXP9_STRPN (Probable ATP-dependent RNA helicase exp9 OS=Streptococcus pneumoniae GN=exp9 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.582e-13
Identity = 41/96 (42.71%), Postives = 55/96 (57.29%), Query Frame = -2
Query:  363 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLKGKKHRPRRESISTK 650
            ATDV ARG+D  GV  V NYD P    +Y+HRIGRTGRAG+SG++IT    +++ +L+ I NL K              ++KG K     ES  +K
Sbjct:  295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQIIENLTK-------------KRMKGLKPASVEESFQSK 377          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DRS1_ASPOR (ATP-dependent RNA helicase drs1 OS=Aspergillus oryzae GN=drs1 PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.582e-13
Identity = 37/76 (48.68%), Postives = 48/76 (63.16%), Query Frame = -2
Query:  423 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWIL 650
            ATD+ ARG+D KGV  VINY+ P S   Y+HR+GRT RAGRSG A T+  E D   ++      KA G +V S ++
Sbjct:  603 ATDLAARGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKASKAQGAKVASRVV 678          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DDX3_DICDI (Probable ATP-dependent RNA helicase ddx3 OS=Dictyostelium discoideum GN=ddx3 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.582e-13
Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = -2
Query:  429 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSW 650
            ATD+ +RG+    VN VIN+D P     Y+HRIGRTGRAG+ G AI+ + E + P    +  LMKAS  ++P W
Sbjct:  560 ATDIASRGLHIGNVNLVINFDLPTDIHIYVHRIGRTGRAGKKGLAISFFNEKNKPVGAELLKLMKASNQDIPDW 633          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DBP3_EMENI (ATP-dependent RNA helicase dbp3 OS=Emericella nidulans GN=dbp3 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.582e-13
Identity = 42/87 (48.28%), Postives = 54/87 (62.07%), Query Frame = -2
Query:  393 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTL-PKLKGKKH 650
            ATDV ARG+D   V  V+N  FP +   Y+HRIGRTGRAG  G AITL+TE D      + N++KA+  EVP  +L     +K K+H
Sbjct:  379 ATDVAARGLDIPHVKLVVNVTFPLTVEDYVHRIGRTGRAGADGHAITLFTETDKAQSGALINVLKAANQEVPEALLKFGSTVKKKQH 465          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DBP2_YEAST (ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae GN=DBP2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.582e-13
Identity = 36/76 (47.37%), Postives = 51/76 (67.11%), Query Frame = -2
Query:  423 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWIL 650
            ATDV ARG+D KG+N VINYD P +   Y+HRIGRTGRAG +G AI+ +TE +      + ++M+ +   +P  +L
Sbjct:  416 ATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLISIMREANQNIPPELL 491          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DBP2_YEAS7 (ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.582e-13
Identity = 36/76 (47.37%), Postives = 51/76 (67.11%), Query Frame = -2
Query:  423 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWIL 650
            ATDV ARG+D KG+N VINYD P +   Y+HRIGRTGRAG +G AI+ +TE +      + ++M+ +   +P  +L
Sbjct:  416 ATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLISIMREANQNIPPELL 491          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DBP2_YARLI (ATP-dependent RNA helicase DBP2 OS=Yarrowia lipolytica GN=DBP2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.582e-13
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = -2
Query:  456 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMK 650
            ATDV +RG+D KG+N VINYD+P +   Y+HRIGRTGRAG  G A T +TED+    R++  +++
Sbjct:  419 ATDVASRGIDVKGINFVINYDYPSNSEDYVHRIGRTGRAGTKGTAYTYFTEDNRKQARDLLVILR 483          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DBP2_COCIM (ATP-dependent RNA helicase DBP2 OS=Coccidioides immitis GN=DBP2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.582e-13
Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = -2
Query:  402 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLKG 650
            ATDV +RG+D + +  V+NYD+P++   Y+HRIGRTGRAG  G AITL+T D+    R++ N++  S  ++   +  + +  G
Sbjct:  428 ATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAKQARDLVNILTESKQQIDPRLAEMARFGG 510          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: RH37_ORYSJ (DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa subsp. japonica GN=PL10A PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.067e-13
Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = -2
Query:  426 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWI 650
            ATDV ARG+D   V  VIN+D P+    Y+HRIGRTGRAG+SG A   + E ++   R +  LM+ +  EVP W+
Sbjct:  489 ATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNEGNLSLARPLCELMQEANQEVPQWL 563          
The following BLAST results are available for this feature:
BLAST of CB304835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 351
Match NameE-valueIdentityDescription
EXP9_STRR61.582e-1342.71Probable ATP-dependent RNA helicase exp9 OS=Strept... [more]
EXP9_STRPN1.582e-1342.71Probable ATP-dependent RNA helicase exp9 OS=Strept... [more]
DRS1_ASPOR1.582e-1348.68ATP-dependent RNA helicase drs1 OS=Aspergillus ory... [more]
DDX3_DICDI1.582e-1347.30Probable ATP-dependent RNA helicase ddx3 OS=Dictyo... [more]
DBP3_EMENI1.582e-1348.28ATP-dependent RNA helicase dbp3 OS=Emericella nidu... [more]
DBP2_YEAST1.582e-1347.37ATP-dependent RNA helicase DBP2 OS=Saccharomyces c... [more]
DBP2_YEAS71.582e-1347.37ATP-dependent RNA helicase DBP2 OS=Saccharomyces c... [more]
DBP2_YARLI1.582e-1352.31ATP-dependent RNA helicase DBP2 OS=Yarrowia lipoly... [more]
DBP2_COCIM1.582e-1340.96ATP-dependent RNA helicase DBP2 OS=Coccidioides im... [more]
RH37_ORYSJ2.067e-1348.00DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_F11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_F11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304835 ID=CB304835; Name=CB304835; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAACAATAAATAAATAAAT
CATCCTCAAACAAGTAAATGATTCCAGAATTTTTCTGGTCCTATGAGAAT
ATAAGGGATTTTTTGTTCTGTGGTTGTATCACTAGCTTATGTAAAACCGT
GGAAATTTATGCTTCTTTTATGGATGGTGTTGGCCTTGTAGCTGGCTGGA
TGTCAAAAATAGATTGAACCAATGAGAACCCAGACAGTGTCTGGAACTGG
AACAGTACTAGTTTCTATGGACTTGATAAAGGAAACAAATAAAGCCAACA
ACAAAAAACTCTTTCAAGAAAAATGAAGGTGATTTGCAGCTTTACTCTTC
ACCATCTTTTGGTTTGGTTGAAATTGATTCTCTTCGTGGCCGATGCTTCT
TACCCTTCAGTTTTGGCAAGGTCAAGATCCAGGATGGAACCTCGCAACCA
GAGGCTTTCATTAAATTAGCTATGTTACGCAAAAATGGAATATCGTCTTC
AGTGTAAAGTGTTATCGCTTCTCCACTCCTACCTGCCCTGCCAGTGCGAC
CTATTCTGTGAATGTATGCAGCACCAGAATCGGGGAAGTCATAATTAATC
ACGCAGTTTACACCCTTGAAATCCATGCCTCGGGCAATAACATCAGTGGC
A
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