CB304835

Overview
NameCB304835
Unique NameCB304835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304835_ssr36 microsatellite CB304835_ssr36:36..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: PRP5_EMENI (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Emericella nidulans GN=prp5 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.067e-13
Identity = 42/101 (41.58%), Postives = 57/101 (56.44%), Query Frame = -2
Query:  348 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLKGKKHRPRRESISTKPKDGE 650
            AT V ARG+D K +  V+NYD P+    Y+HR GRTGRAG +G A+T  TED   +  +IA  +K SG EVP  +  L     +K +  +E  S     G+
Sbjct:  849 ATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYSVDIAKALKQSGQEVPEAVQKLVDSFLEKVKAGKEKASNSGFGGK 949          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DRS1_NEUCR (ATP-dependent RNA helicase drs-1 OS=Neurospora crassa GN=drs-1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.699e-13
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = -2
Query:  423 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWIL 650
            ATD+ +RG+D KGV+ VINY+ P +   Y+HR+GRT RAGRSG AITL  E D   ++      K+ G ++ S I+
Sbjct:  594 ATDLASRGLDIKGVDTVINYEAPQTPEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKAGKSQGAKISSRII 669          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DBP2_PICGU (ATP-dependent RNA helicase DBP2 OS=Pichia guilliermondii GN=DBP2 PE=3 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 2.699e-13
Identity = 36/76 (47.37%), Postives = 52/76 (68.42%), Query Frame = -2
Query:  423 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWIL 650
            ATDV ARG+D KG++ VINYD P +   Y+HRIGRTGRAG +G A++L+TE +     ++  +M+ +   VP  +L
Sbjct:  428 ATDVAARGIDVKGISYVINYDMPGNIEDYVHRIGRTGRAGTTGTAVSLFTEANSKLGGDLCKIMREANQTVPPELL 503          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DBP2_GIBZE (ATP-dependent RNA helicase DBP2 OS=Gibberella zeae GN=DBP2 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.699e-13
Identity = 34/83 (40.96%), Postives = 56/83 (67.47%), Query Frame = -2
Query:  402 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLKG 650
            ATDV +RG+D + +  V+NYD+P++   YIHRIGRTGRAG  G AITL+T D+    R++ N+++ +  ++   ++ + +  G
Sbjct:  437 ATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAMGTAITLFTTDNQKQARDLVNVLQEAKQQIDPRLVEMTRYGG 519          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DRS1_NEOFI (ATP-dependent RNA helicase drs1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=drs1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.525e-13
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = -2
Query:  423 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWIL 650
            ATD+ +RG+D KGV  VINY+ P S   Y+HR+GRT RAGRSG A T+  E D   +++     KA G ++ S ++
Sbjct:  600 ATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKIVKSAVKAGKAQGAKIVSRVV 675          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DRS1_CHAGB (ATP-dependent RNA helicase DRS1 OS=Chaetomium globosum GN=DRS1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.525e-13
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = -2
Query:  423 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWIL 650
            ATD+ +RG+D KG++ VINY+ P S   Y+HR+GRT RAGRSG AITL  E D   ++      KA G ++ S ++
Sbjct:  571 ATDLASRGLDIKGIDTVINYEAPQSLEIYVHRVGRTARAGRSGVAITLAAEPDRKVVKAAVRAGKAQGAKIISRVI 646          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DRS1_ASPTN (ATP-dependent RNA helicase drs1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=drs1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.525e-13
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = -2
Query:  423 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWIL 650
            ATD+ +RG+D KGV  VINY+ P S   Y+HR+GRT RAGRSG A T+  E D   ++      KA G +V S ++
Sbjct:  605 ATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKASKAQGAKVASRVV 680          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DRS1_ASPFU (ATP-dependent RNA helicase drs1 OS=Aspergillus fumigatus GN=drs1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.525e-13
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = -2
Query:  423 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWIL 650
            ATD+ +RG+D KGV  VINY+ P S   Y+HR+GRT RAGRSG A T+  E D   +++     KA G ++ S ++
Sbjct:  611 ATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKIVKSAVKAGKAQGAKIVSRVV 686          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DBP3_ASPNC (ATP-dependent RNA helicase dbp3 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp3 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.525e-13
Identity = 42/87 (48.28%), Postives = 54/87 (62.07%), Query Frame = -2
Query:  393 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTL-PKLKGKKH 650
            ATDV ARG+D   V  VIN  FP +   Y+HRIGRTGRAG  G AITL+TE D      + N++KA+  +VP  +L     +K K+H
Sbjct:  386 ATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGRTGRAGAEGHAITLFTEVDKAQSGALINVLKAANQDVPEDLLKFGATVKKKQH 472          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DBP3_AJECN (ATP-dependent RNA helicase DBP3 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=DBP3 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.525e-13
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = -2
Query:  393 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTL-PKLKGKKH 650
            ATDV ARG+D   V  V+N  FP +   Y+HRIGRTGRAG  G AIT++TE+D      + N++K +  ++P  +L     +K K+H
Sbjct:  378 ATDVAARGLDIPAVKLVLNVTFPLTVEDYVHRIGRTGRAGSDGLAITMFTENDKALSGGLVNILKGANQDIPEALLKFGTTVKKKQH 464          
The following BLAST results are available for this feature:
BLAST of CB304835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 351
Match NameE-valueIdentityDescription
PRP5_EMENI2.067e-1341.58Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
DRS1_NEUCR2.699e-1347.37ATP-dependent RNA helicase drs-1 OS=Neurospora cra... [more]
DBP2_PICGU2.699e-1347.37ATP-dependent RNA helicase DBP2 OS=Pichia guillier... [more]
DBP2_GIBZE2.699e-1340.96ATP-dependent RNA helicase DBP2 OS=Gibberella zeae... [more]
DRS1_NEOFI3.525e-1346.05ATP-dependent RNA helicase drs1 OS=Neosartorya fis... [more]
DRS1_CHAGB3.525e-1347.37ATP-dependent RNA helicase DRS1 OS=Chaetomium glob... [more]
DRS1_ASPTN3.525e-1347.37ATP-dependent RNA helicase drs1 OS=Aspergillus ter... [more]
DRS1_ASPFU3.525e-1346.05ATP-dependent RNA helicase drs1 OS=Aspergillus fum... [more]
DBP3_ASPNC3.525e-1348.28ATP-dependent RNA helicase dbp3 OS=Aspergillus nig... [more]
DBP3_AJECN3.525e-1343.68ATP-dependent RNA helicase DBP3 OS=Ajellomyces cap... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_F11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_F11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304835 ID=CB304835; Name=CB304835; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAACAATAAATAAATAAAT
CATCCTCAAACAAGTAAATGATTCCAGAATTTTTCTGGTCCTATGAGAAT
ATAAGGGATTTTTTGTTCTGTGGTTGTATCACTAGCTTATGTAAAACCGT
GGAAATTTATGCTTCTTTTATGGATGGTGTTGGCCTTGTAGCTGGCTGGA
TGTCAAAAATAGATTGAACCAATGAGAACCCAGACAGTGTCTGGAACTGG
AACAGTACTAGTTTCTATGGACTTGATAAAGGAAACAAATAAAGCCAACA
ACAAAAAACTCTTTCAAGAAAAATGAAGGTGATTTGCAGCTTTACTCTTC
ACCATCTTTTGGTTTGGTTGAAATTGATTCTCTTCGTGGCCGATGCTTCT
TACCCTTCAGTTTTGGCAAGGTCAAGATCCAGGATGGAACCTCGCAACCA
GAGGCTTTCATTAAATTAGCTATGTTACGCAAAAATGGAATATCGTCTTC
AGTGTAAAGTGTTATCGCTTCTCCACTCCTACCTGCCCTGCCAGTGCGAC
CTATTCTGTGAATGTATGCAGCACCAGAATCGGGGAAGTCATAATTAATC
ACGCAGTTTACACCCTTGAAATCCATGCCTCGGGCAATAACATCAGTGGC
A
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