CB304838

Overview
NameCB304838
Unique NameCB304838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ1_SYNY3 (Chaperone protein dnaJ 1 OS=Synechocystis sp. (strain PCC 6803) GN=dnaJ1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.630e-20
Identity = 47/71 (66.20%), Postives = 56/71 (78.87%), Query Frame = -2
Query:  160 DYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTG 372
            DYY TL V ++A   EIK  YR+LA KYHPD+NK PGAEEKFKEI+ AYEVLS+ E R  YD+FGEAG++G
Sbjct:    4 DYYQTLGVTRDADKDEIKRAYRRLARKYHPDVNKEPGAEEKFKEINRAYEVLSEPEIRQRYDQFGEAGVSG 74          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_THEEB (Chaperone protein dnaJ OS=Thermosynechococcus elongatus (strain BP-1) GN=dnaJ PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 6.048e-20
Identity = 45/71 (63.38%), Postives = 56/71 (78.87%), Query Frame = -2
Query:  160 DYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTG 372
            D+Y  L V ++A  +E+K  YR+LA KYHPD+NK PGAEEKFKEI+ AYEVLSD + R  YDRFGEAG++G
Sbjct:    4 DFYEILGVSRSADAEELKRAYRRLARKYHPDVNKEPGAEEKFKEINRAYEVLSDPQARANYDRFGEAGVSG 74          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_CARHZ (Chaperone protein dnaJ OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.048e-20
Identity = 49/76 (64.47%), Postives = 56/76 (73.68%), Query Frame = -2
Query:  148 DYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKS-PGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDG 372
            DYY  L V +NAT +EIK  YRKLA KYHPD+NK  P A EKFKEI+ AYEVLSD EKR  YD+FG AG+ G + G
Sbjct:    4 DYYEILGVARNATPEEIKKAYRKLARKYHPDVNKDDPNAAEKFKEINEAYEVLSDPEKRARYDQFGHAGVDGNFAG 79          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_METMA (Chaperone protein dnaJ OS=Methanosarcina mazei GN=dnaJ PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.898e-20
Identity = 46/77 (59.74%), Postives = 57/77 (74.03%), Query Frame = -2
Query:  154 AAGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEY 384
            A   DYY  L + +++++++IK  YRKLA +YHPD NK PGAEEKFKEIS AY VLSD EKR  YDRFG AG+  +Y
Sbjct:    2 ATKRDYYEILGLSKDSSVEDIKKTYRKLALQYHPDRNKEPGAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQY 78          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_GEOTN (Chaperone protein dnaJ OS=Geobacillus thermodenitrificans (strain NG80-2) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.898e-20
Identity = 49/78 (62.82%), Postives = 54/78 (69.23%), Query Frame = -2
Query:  148 AGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDG 381
            A  DYY  L V +NAT  EIK  YRKL+ +YHPDINK+P A EKFKEI  AYEVLSDDEKR  YDRFG A     + G
Sbjct:    2 AKRDYYEVLGVSKNATKDEIKKAYRKLSKQYHPDINKAPDAAEKFKEIKEAYEVLSDDEKRARYDRFGHADPNEAFGG 79          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_ROSS1 (Chaperone protein dnaJ OS=Roseiflexus sp. (strain RS-1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.032e-19
Identity = 50/90 (55.56%), Postives = 60/90 (66.67%), Query Frame = -2
Query:  115 AAGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDGLSNTSQGVDPF 384
            A   DYY  L V +NA+  EIK  +R+LA +YHPD+NK+P AE KFKEI+ AYEVLSD EKR +YDRFG AG T         + G DPF
Sbjct:    2 AVKRDYYEVLGVQRNASQDEIKKAFRRLARQYHPDVNKAPDAEAKFKEINEAYEVLSDPEKRSMYDRFGHAGPT--------AAPGFDPF 83          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_ROSCS (Chaperone protein dnaJ OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.032e-19
Identity = 50/90 (55.56%), Postives = 60/90 (66.67%), Query Frame = -2
Query:  115 AAGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDGLSNTSQGVDPF 384
            A   DYY  L V +NA+  EIK  +R+LA +YHPD+NK+P AE KFKEI+ AYEVLSD EKR +YDRFG AG T         + G DPF
Sbjct:    2 AVKRDYYEVLGVQRNASQDEIKKAFRRLARQYHPDVNKAPDAEAKFKEINEAYEVLSDPEKRSMYDRFGHAGPT--------AAPGFDPF 83          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_METAC (Chaperone protein dnaJ OS=Methanosarcina acetivorans GN=dnaJ PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.032e-19
Identity = 46/77 (59.74%), Postives = 57/77 (74.03%), Query Frame = -2
Query:  154 AAGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEY 384
            A   DYY  L + ++A++++IK  YRKLA +YHPD NK PGAE+KFKEIS AY VLSD EKR  YDRFG AG+  +Y
Sbjct:    2 ATKRDYYEILGLPKDASVEDIKKTYRKLALQYHPDRNKDPGAEDKFKEISEAYAVLSDTEKRAQYDRFGHAGIDNQY 78          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_GEOKA (Chaperone protein dnaJ OS=Geobacillus kaustophilus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.032e-19
Identity = 50/87 (57.47%), Postives = 56/87 (64.37%), Query Frame = -2
Query:  121 AGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDGLSNTSQGVD 381
            A  DYY  L V +NAT  EIK  YRKL+ +YHPD+NK+P A EKFKEI  AYEVLSDDEKR  YDRFG A     + G      G D
Sbjct:    2 AKRDYYEILGVSKNATKDEIKKAYRKLSKQYHPDVNKAPDAAEKFKEIKEAYEVLSDDEKRARYDRFGHADPNETFGGGGFQGGGFD 88          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_LACLA (Chaperone protein dnaJ OS=Lactococcus lactis subsp. lactis GN=dnaJ PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.347e-19
Identity = 43/76 (56.58%), Postives = 56/76 (73.68%), Query Frame = -2
Query:  148 TDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDG 375
            T+YY  L V +NA+  EIK  YRK++ KYHPD+NK  GAEEK+KE+  AYE LSD++KR  YD++GEAG  G + G
Sbjct:    4 TEYYERLGVDKNASQDEIKKAYRKMSKKYHPDLNKEEGAEEKYKEVQEAYETLSDEQKRAAYDQYGEAGANGGFGG 79          
The following BLAST results are available for this feature:
BLAST of CB304838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ1_SYNY34.630e-2066.20Chaperone protein dnaJ 1 OS=Synechocystis sp. (str... [more]
DNAJ_THEEB6.048e-2063.38Chaperone protein dnaJ OS=Thermosynechococcus elon... [more]
DNAJ_CARHZ6.048e-2064.47Chaperone protein dnaJ OS=Carboxydothermus hydroge... [more]
DNAJ_METMA7.898e-2059.74Chaperone protein dnaJ OS=Methanosarcina mazei GN=... [more]
DNAJ_GEOTN7.898e-2062.82Chaperone protein dnaJ OS=Geobacillus thermodenitr... [more]
DNAJ_ROSS11.032e-1955.56Chaperone protein dnaJ OS=Roseiflexus sp. (strain ... [more]
DNAJ_ROSCS1.032e-1955.56Chaperone protein dnaJ OS=Roseiflexus castenholzii... [more]
DNAJ_METAC1.032e-1959.74Chaperone protein dnaJ OS=Methanosarcina acetivora... [more]
DNAJ_GEOKA1.032e-1957.47Chaperone protein dnaJ OS=Geobacillus kaustophilus... [more]
DNAJ_LACLA1.347e-1956.58Chaperone protein dnaJ OS=Lactococcus lactis subsp... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_G04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_G04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304838 ID=CB304838; Name=CB304838; organism=Citrus sinensis; type=EST; length=547bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAAAATTGAAGTTAATGC
CTCCGGCCTCACCCACTCCTCCAAAGAGCCCATCTGAACCACCAAAGAAT
GCACTATATAATTCAAAAGGATCCACCCCCTGTGAAGTGTTGCTCAATCC
ATCATATTCTCCAGTCATACCTGCCTCACCAAAGCGATCATATACAAATC
TTTTCTCATCATCTGAAAGGACCTCATACGCAAAACTTATCTCTTTGAAC
TTCTCTTCAGCTCCAGGACTCTTGTTGATATCCGGATGATACTTACAAGC
AAGCTTTCTGTAAAAGGTCTTGATCTCCTGCAACGTGGCATTCTGACAAA
CATTCAAAGTGGAATAGTAATCTGTACCAGCGGCCCTGATCATTCCCCTT
CGATGACTCCGATTATTGCCAAAACAATAATTCCATTTGAAACTGAAACT
CGTACTTAAATGAAGCTTCAAATTGACATAAAATGGACTAGCAATAACGG
GCATACTTCATAAGTTGGGGGCGTTAACAGGAAAAAAAAGGAGTCCC
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