CB304838

Overview
NameCB304838
Unique NameCB304838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: CBPA_SALCH (Curved DNA-binding protein OS=Salmonella choleraesuis GN=cbpA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.483e-13
Identity = 33/63 (52.38%), Postives = 47/63 (74.60%), Query Frame = -2
Query:  184 DYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDR 372
            DYY+ + V     L+ IKT YR+LA KYHPD++K P AE +FKE++ A+EVLSD+++R  YD+
Sbjct:    5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPNAEARFKEVAEAWEVLSDEQRRAEYDQ 67          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: MDJ1_SCHPO (DnaJ homolog 1, mitochondrial OS=Schizosaccharomyces pombe GN=mdj1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.160e-13
Identity = 38/93 (40.86%), Postives = 52/93 (55.91%), Query Frame = -2
Query:  115 TDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMT------GEYDGLSNTSQGVDPF 375
            TD Y TL V ++A+  EIK+ Y KLA +YHPD N    A++KF EI  AYEVL D +K+  +D +G           G+++G  N   G   F
Sbjct:   85 TDPYKTLGVSKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFVEIKQAYEVLQDPKKKKAFDTYGAGAFKNGEFTGGDFEGFQNGFAGASSF 177          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_WIGBR (Chaperone protein dnaJ OS=Wigglesworthia glossinidia brevipalpis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.160e-13
Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = -2
Query:  136 AGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPG---AEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDGLSNT 381
            A +DYY  L + +NA+ +EIKT Y++LA K+HPD  ++PG   AE KFKEI  AYEVL D +KR  Y+++G    T    G SNT
Sbjct:    2 AKSDYYDILGISKNASDREIKTAYKRLAVKFHPD--RNPGNLEAESKFKEIKEAYEVLLDPKKRAAYNQYGH---TAFDQGSSNT 81          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_SYNFM (Chaperone protein dnaJ OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.160e-13
Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = -2
Query:  160 DYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPG---AEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTG 372
            DYY  L V + A+ +EIK  YRKLA KYHPD  ++PG   +EE FKE + AYEVL D +K+ +YD +G  G+ G
Sbjct:    5 DYYEILGVTRQASEEEIKKAYRKLALKYHPD--RNPGDKDSEELFKEAAEAYEVLHDAQKKRIYDTYGHEGLRG 76          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_RICFE (Chaperone protein dnaJ OS=Rickettsia felis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.160e-13
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = -2
Query:  178 DYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFG 372
            DYY  L V + A+  ++K  Y KLA +YHPD   +  AE+KFKEI+ AY+VL D++KR  YDRFG
Sbjct:    4 DYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINSAYDVLKDEQKRAAYDRFG 68          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_RHILO (Chaperone protein dnaJ OS=Rhizobium loti GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.160e-13
Identity = 39/83 (46.99%), Postives = 52/83 (62.65%), Query Frame = -2
Query:  127 DYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSP-GAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDGLSNTSQG 372
            D+Y TL V + A  +E+K+ +RKLA ++HPD N      E KFKEI+ AYE L D +KR  YDRFG A    E  G++  +QG
Sbjct:    4 DFYETLGVQKGADEKELKSAFRKLAMQFHPDRNPGDHSCEHKFKEINEAYETLKDPQKRAAYDRFGHAAF--EQGGMNGGAQG 84          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_ORITB (Chaperone protein dnaJ OS=Orientia tsutsugamushi (strain Boryong) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.160e-13
Identity = 38/94 (40.43%), Postives = 53/94 (56.38%), Query Frame = -2
Query:  106 DYYSTLNVCQNATLQEIKTFYRKLACKYHPDINK-SPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMT----GEYDGLSNTSQGVDPFELY 372
            DYY  L V + A+ +EIK  YRKL  KYHPD N     AE+K K I+ AY++L D++KR  YD+ G         G Y      + G+DP +++
Sbjct:    5 DYYQVLGVSRTASQEEIKRAYRKLVLKYHPDHNPGDKNAEQKIKNINEAYDILKDEKKRSAYDQLGHQAFKNSGGGNYQQHHGFTGGIDPNDIF 98          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_MYCPU (Chaperone protein dnaJ OS=Mycoplasma pulmonis GN=dnaJ PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 7.160e-13
Identity = 39/91 (42.86%), Postives = 58/91 (63.74%), Query Frame = -2
Query:  103 DYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFG-EAGMTGEYDGLSNTSQGVDPFELYS 372
            DYY  L + ++A  +EIK  YRKLA ++HPD + S  +E K +EI+ AYEVLS+ EK+ +YD++G EA     ++G +  S G   F  +S
Sbjct:    6 DYYKILGIDKSANEKEIKKAYRKLAMEHHPDRSSSKESEAKMREINEAYEVLSNPEKKAIYDKYGHEAANNPGFNGFNAGSAGFGNFGGFS 96          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_CLOTH (Chaperone protein dnaJ OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.160e-13
Identity = 40/72 (55.56%), Postives = 48/72 (66.67%), Query Frame = -2
Query:  172 AAGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINK-SPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEA 384
            A   DYY  L V + A+  EIK  YRKLA +YHPD+N     AE KFKEI+ AYEVLSD +KR  YD+FG +
Sbjct:    2 AGKRDYYEILGVDRGASDAEIKKAYRKLAKQYHPDMNPGDKAAEAKFKEINEAYEVLSDPQKRARYDQFGHS 73          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_AGRRK (Chaperone protein dnaJ OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.160e-13
Identity = 40/86 (46.51%), Postives = 51/86 (59.30%), Query Frame = -2
Query:  127 AGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPG-AEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDGLSNTSQG 381
            A  DYY TL V + A  +E+K+ +RKLA ++HPD N     AE KFKEI+ AYE L D  KR  YDR+G A    E+ G+     G
Sbjct:    2 AKADYYETLGVSRTADEKELKSAFRKLAMQFHPDKNPDDNDAERKFKEINEAYETLKDPNKRAAYDRYGHAAF--EHGGMGGGGFG 85          
The following BLAST results are available for this feature:
BLAST of CB304838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CBPA_SALCH5.483e-1352.38Curved DNA-binding protein OS=Salmonella choleraes... [more]
MDJ1_SCHPO7.160e-1340.86DnaJ homolog 1, mitochondrial OS=Schizosaccharomyc... [more]
DNAJ_WIGBR7.160e-1349.41Chaperone protein dnaJ OS=Wigglesworthia glossinid... [more]
DNAJ_SYNFM7.160e-1351.35Chaperone protein dnaJ OS=Syntrophobacter fumaroxi... [more]
DNAJ_RICFE7.160e-1352.31Chaperone protein dnaJ OS=Rickettsia felis GN=dnaJ... [more]
DNAJ_RHILO7.160e-1346.99Chaperone protein dnaJ OS=Rhizobium loti GN=dnaJ P... [more]
DNAJ_ORITB7.160e-1340.43Chaperone protein dnaJ OS=Orientia tsutsugamushi (... [more]
DNAJ_MYCPU7.160e-1342.86Chaperone protein dnaJ OS=Mycoplasma pulmonis GN=d... [more]
DNAJ_CLOTH7.160e-1355.56Chaperone protein dnaJ OS=Clostridium thermocellum... [more]
DNAJ_AGRRK7.160e-1346.51Chaperone protein dnaJ OS=Agrobacterium radiobacte... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_G04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_G04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304838 ID=CB304838; Name=CB304838; organism=Citrus sinensis; type=EST; length=547bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAAAATTGAAGTTAATGC
CTCCGGCCTCACCCACTCCTCCAAAGAGCCCATCTGAACCACCAAAGAAT
GCACTATATAATTCAAAAGGATCCACCCCCTGTGAAGTGTTGCTCAATCC
ATCATATTCTCCAGTCATACCTGCCTCACCAAAGCGATCATATACAAATC
TTTTCTCATCATCTGAAAGGACCTCATACGCAAAACTTATCTCTTTGAAC
TTCTCTTCAGCTCCAGGACTCTTGTTGATATCCGGATGATACTTACAAGC
AAGCTTTCTGTAAAAGGTCTTGATCTCCTGCAACGTGGCATTCTGACAAA
CATTCAAAGTGGAATAGTAATCTGTACCAGCGGCCCTGATCATTCCCCTT
CGATGACTCCGATTATTGCCAAAACAATAATTCCATTTGAAACTGAAACT
CGTACTTAAATGAAGCTTCAAATTGACATAAAATGGACTAGCAATAACGG
GCATACTTCATAAGTTGGGGGCGTTAACAGGAAAAAAAAGGAGTCCC
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