CB304838

Overview
NameCB304838
Unique NameCB304838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_STAA2 (Chaperone protein dnaJ OS=Staphylococcus aureus (strain JH1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.686e-19
Identity = 46/74 (62.16%), Postives = 53/74 (71.62%), Query Frame = -2
Query:  160 AGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTG 381
            A  DYY  L + ++A+  EIK  YRKL+ KYHPDINK  GA+EKFKEIS AYEVLSDD KR  YD+FG  G  G
Sbjct:    2 AKRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQG 75          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_STAA1 (Chaperone protein dnaJ OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.686e-19
Identity = 46/74 (62.16%), Postives = 53/74 (71.62%), Query Frame = -2
Query:  160 AGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTG 381
            A  DYY  L + ++A+  EIK  YRKL+ KYHPDINK  GA+EKFKEIS AYEVLSDD KR  YD+FG  G  G
Sbjct:    2 AKRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQG 75          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNJB4_MOUSE (DnaJ homolog subfamily B member 4 OS=Mus musculus GN=Dnajb4 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.733e-19
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = -2
Query:  148 GTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDG 378
            G DYY  L + + AT +++K  YRK A K+HPD NKSP AEEKFKE++ AYEVLSD +KR +YD+FGE G+ G   G
Sbjct:    2 GKDYYHILGIDKGATDEDVKKAYRKQALKFHPDKNKSPQAEEKFKEVAEAYEVLSDPKKREIYDQFGEEGLKGGAGG 78          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_LACAC (Chaperone protein dnaJ OS=Lactobacillus acidophilus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.733e-19
Identity = 46/85 (54.12%), Postives = 58/85 (68.24%), Query Frame = -2
Query:  127 AGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDGLSNTSQG 381
            A  DYY  L V ++A+ QEI   YRKLA KYHPD+N  PGAEEK+K+++ AYEVL D +KR  YD+FG AG+ G+  G     QG
Sbjct:    2 AQEDYYKVLGVDRDASDQEISKAYRKLAKKYHPDLNHEPGAEEKYKQVNEAYEVLHDKQKRAQYDQFGSAGVNGQ-GGFGGAGQG 85          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_STAS1 (Chaperone protein dnaJ OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.141e-18
Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = -2
Query:  148 AGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDG 381
            A  DYY  L V ++A+  EIK  YRKL+ +YHPDINK  GA+EKFKEIS AYEVLSD+ KR  YD+FG  G  G + G
Sbjct:    2 AKRDYYEVLGVSKSASKDEIKKAYRKLSKQYHPDINKEEGADEKFKEISEAYEVLSDENKRANYDQFGHDGPQGGFGG 79          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_METTH (Chaperone protein dnaJ OS=Methanobacterium thermoautotrophicum GN=dnaJ PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.490e-18
Identity = 47/74 (63.51%), Postives = 52/74 (70.27%), Query Frame = -2
Query:  160 AGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTG 381
            A  DYY  L V + A  +EIK  YR+LA KYHPD++  P A EKFKEIS AY VLSDDEKR  YDRFG AGM G
Sbjct:    2 AKRDYYEILGVDRGADKKEIKKAYRRLARKYHPDVSDDPDAAEKFKEISEAYAVLSDDEKRARYDRFGHAGMDG 75          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_LACDB (Chaperone protein dnaJ OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.490e-18
Identity = 44/76 (57.89%), Postives = 55/76 (72.37%), Query Frame = -2
Query:  157 AAGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGE 384
            AA  DYY  L V ++A+  EI   YRKLA KYHPD+N   GAEEK+KE++ AYEVL D +KR  YD+FG+AGM G+
Sbjct:    2 AANRDYYDVLGVSRDASDAEISKAYRKLAKKYHPDLNHEAGAEEKYKEVNEAYEVLHDPQKRQQYDQFGQAGMNGQ 77          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_LACDA (Chaperone protein dnaJ OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.490e-18
Identity = 44/76 (57.89%), Postives = 55/76 (72.37%), Query Frame = -2
Query:  157 AAGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGE 384
            AA  DYY  L V ++A+  EI   YRKLA KYHPD+N   GAEEK+KE++ AYEVL D +KR  YD+FG+AGM G+
Sbjct:    2 AANRDYYDVLGVSRDASDAEISKAYRKLAKKYHPDLNHEAGAEEKYKEVNEAYEVLHDPQKRQQYDQFGQAGMNGQ 77          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_WOLWR (Chaperone protein dnaJ OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.945e-18
Identity = 49/89 (55.06%), Postives = 59/89 (66.29%), Query Frame = -2
Query:  115 DYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPG---AEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDGLSNTSQGVDPF 372
            DYY  L V +NA++ EIK  Y+KLA KYHPD N  PG   AEEKFKE++ AYEVLSD EKR  YDR+G  G +G + G S+     D F
Sbjct:    5 DYYDLLEVGRNASIDEIKKAYKKLALKYHPDRN--PGNQEAEEKFKEVTAAYEVLSDSEKRAGYDRYGHEGASGGFQGFSSAGDFSDIF 91          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_SYNP2 (Chaperone protein dnaJ OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.945e-18
Identity = 43/71 (60.56%), Postives = 54/71 (76.06%), Query Frame = -2
Query:  160 DYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTG 372
            D+Y  L V ++    E+K  YR+LA +YHPD+NK PGAEEKFKEI+ AYEVLS+ E R  YDRFGEAG++G
Sbjct:    4 DFYEILGVSRDCGKDELKRAYRRLARQYHPDVNKDPGAEEKFKEINRAYEVLSEPETRARYDRFGEAGVSG 74          
The following BLAST results are available for this feature:
BLAST of CB304838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_STAA26.686e-1962.16Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_STAA16.686e-1962.16Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNJB4_MOUSE8.733e-1957.14DnaJ homolog subfamily B member 4 OS=Mus musculus ... [more]
DNAJ_LACAC8.733e-1954.12Chaperone protein dnaJ OS=Lactobacillus acidophilu... [more]
DNAJ_STAS11.141e-1858.97Chaperone protein dnaJ OS=Staphylococcus saprophyt... [more]
DNAJ_METTH1.490e-1863.51Chaperone protein dnaJ OS=Methanobacterium thermoa... [more]
DNAJ_LACDB1.490e-1857.89Chaperone protein dnaJ OS=Lactobacillus delbruecki... [more]
DNAJ_LACDA1.490e-1857.89Chaperone protein dnaJ OS=Lactobacillus delbruecki... [more]
DNAJ_WOLWR1.945e-1855.06Chaperone protein dnaJ OS=Wolbachia sp. subsp. Dro... [more]
DNAJ_SYNP21.945e-1860.56Chaperone protein dnaJ OS=Synechococcus sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_G04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_G04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304838 ID=CB304838; Name=CB304838; organism=Citrus sinensis; type=EST; length=547bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAAAATTGAAGTTAATGC
CTCCGGCCTCACCCACTCCTCCAAAGAGCCCATCTGAACCACCAAAGAAT
GCACTATATAATTCAAAAGGATCCACCCCCTGTGAAGTGTTGCTCAATCC
ATCATATTCTCCAGTCATACCTGCCTCACCAAAGCGATCATATACAAATC
TTTTCTCATCATCTGAAAGGACCTCATACGCAAAACTTATCTCTTTGAAC
TTCTCTTCAGCTCCAGGACTCTTGTTGATATCCGGATGATACTTACAAGC
AAGCTTTCTGTAAAAGGTCTTGATCTCCTGCAACGTGGCATTCTGACAAA
CATTCAAAGTGGAATAGTAATCTGTACCAGCGGCCCTGATCATTCCCCTT
CGATGACTCCGATTATTGCCAAAACAATAATTCCATTTGAAACTGAAACT
CGTACTTAAATGAAGCTTCAAATTGACATAAAATGGACTAGCAATAACGG
GCATACTTCATAAGTTGGGGGCGTTAACAGGAAAAAAAAGGAGTCCC
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