CB304838

Overview
NameCB304838
Unique NameCB304838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNJB5_BOVIN (DnaJ homolog subfamily B member 5 OS=Bos taurus GN=DNAJB5 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.393e-18
Identity = 48/85 (56.47%), Postives = 57/85 (67.06%), Query Frame = -2
Query:  127 GTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGM-TGEYDGLSNTSQG 378
            G DYY  L +   A   EIK  YRK+A KYHPD NK P AEEKFKEI+ AY+VLSD +KR +YD++GE G+ TG   G S  S G
Sbjct:    2 GKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKRGLYDQYGEEGLKTG--GGSSGGSSG 84          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_NOSP7 (Chaperone protein dnaJ OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.393e-18
Identity = 42/78 (53.85%), Postives = 55/78 (70.51%), Query Frame = -2
Query:  139 DYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDGLSN 372
            DYY  L V ++   +E+K  YR+LA KYHPD+NK PGAE++FKEI+ AYEVLS+ E R  YDRFG  G++G   G  +
Sbjct:    4 DYYEILGVSRDTDKEELKQAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSEPETRARYDRFGPEGVSGAGAGFQD 81          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_ACAM1 (Chaperone protein dnaJ OS=Acaryochloris marina (strain MBIC 11017) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.393e-18
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = -2
Query:  163 DYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMT 372
            DYY  L V ++A   E+K  YR+LA KYHPD+NK PGAE+KFKEI+ AYE LSD + R  YD+FGEAG++
Sbjct:    4 DYYDILGVSRSADPDELKRSYRRLARKYHPDVNKEPGAEDKFKEINKAYETLSDPQMRGRYDQFGEAGVS 73          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ1_DROME (DnaJ protein homolog 1 OS=Drosophila melanogaster GN=DnaJ-1 PE=1 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 7.393e-18
Identity = 44/77 (57.14%), Postives = 55/77 (71.43%), Query Frame = -2
Query:  148 GTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDG 378
            G D+Y  L + + A+  EIK  YRKLA KYHPD NKSP AEE+FKEI+ AYEVLSD +KR ++D +GE G+ G   G
Sbjct:    2 GKDFYKILGLERKASDDEIKKAYRKLALKYHPDKNKSPQAEERFKEIAEAYEVLSDKKKRDIFDNYGEDGLKGGQPG 78          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_STRA5 (Chaperone protein dnaJ OS=Streptococcus agalactiae serotype V GN=dnaJ PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.655e-18
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = -2
Query:  127 TDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDGLSNTSQG 375
            T++Y  L V ++A+  EIK  YR+++ KYHPDINK  GAEEK+KE+  AYE LSD +KR  YD++G AG  G + G      G
Sbjct:    4 TEFYDRLGVSKDASQDEIKKAYRRMSKKYHPDINKETGAEEKYKEVQEAYETLSDTQKRAAYDQYGAAGANGGFGGFDGGGFG 86          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_STRA3 (Chaperone protein dnaJ OS=Streptococcus agalactiae serotype III GN=dnaJ PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.655e-18
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = -2
Query:  127 TDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDGLSNTSQG 375
            T++Y  L V ++A+  EIK  YR+++ KYHPDINK  GAEEK+KE+  AYE LSD +KR  YD++G AG  G + G      G
Sbjct:    4 TEFYDRLGVSKDASQDEIKKAYRRMSKKYHPDINKETGAEEKYKEVQEAYETLSDTQKRAAYDQYGAAGANGGFGGFDGGGFG 86          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_STRA1 (Chaperone protein dnaJ OS=Streptococcus agalactiae serotype Ia GN=dnaJ PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.655e-18
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = -2
Query:  127 TDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDGLSNTSQG 375
            T++Y  L V ++A+  EIK  YR+++ KYHPDINK  GAEEK+KE+  AYE LSD +KR  YD++G AG  G + G      G
Sbjct:    4 TEFYDRLGVSKDASQDEIKKAYRRMSKKYHPDINKEAGAEEKYKEVQEAYETLSDTQKRAAYDQYGAAGANGGFGGFDGGGFG 86          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_HALOH (Chaperone protein dnaJ OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.655e-18
Identity = 46/77 (59.74%), Postives = 55/77 (71.43%), Query Frame = -2
Query:  157 AAGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKS-PGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGE 384
            A   DYY  L V ++A  +EIK  YR+LA KYHPDINK  P AEEKFKEIS AYE+LSD +KR  YD++G AG+  E
Sbjct:    2 ATSKDYYEILGVSRDADQKEIKKAYRRLARKYHPDINKDDPDAEEKFKEISEAYEILSDPDKRARYDQYGHAGINEE 78          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_DICT6 (Chaperone protein dnaJ OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.655e-18
Identity = 45/85 (52.94%), Postives = 55/85 (64.71%), Query Frame = -2
Query:  118 DYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDGLSNTSQGVDP 372
            DYY  L V +NAT  EIK  YR+L  +YHPD+NK P A EKFKEI+ AYEVLSD +KR  YD+FG     G++ G  +   G  P
Sbjct:    6 DYYEILGVPRNATQDEIKQAYRRLVRQYHPDLNKDPSAHEKFKEINEAYEVLSDPQKRAQYDQFGH---VGDFSGYGDFQGGWQP 87          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNJB4_BOVIN (DnaJ homolog subfamily B member 4 OS=Bos taurus GN=DNAJB4 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.261e-17
Identity = 42/77 (54.55%), Postives = 56/77 (72.73%), Query Frame = -2
Query:  148 GTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDG 378
            G DYY  L + + A+ ++IK  YRK A ++HPD NKSP AEE+FKE++ AYEVLSD +KR +YD+FGE G+ G   G
Sbjct:    2 GKDYYCILGIEKGASDEDIKKAYRKQALRFHPDKNKSPQAEERFKEVAEAYEVLSDPKKREIYDQFGEEGLKGGAGG 78          
The following BLAST results are available for this feature:
BLAST of CB304838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNJB5_BOVIN7.393e-1856.47DnaJ homolog subfamily B member 5 OS=Bos taurus GN... [more]
DNAJ_NOSP77.393e-1853.85Chaperone protein dnaJ OS=Nostoc punctiforme (stra... [more]
DNAJ_ACAM17.393e-1860.00Chaperone protein dnaJ OS=Acaryochloris marina (st... [more]
DNAJ1_DROME7.393e-1857.14DnaJ protein homolog 1 OS=Drosophila melanogaster ... [more]
DNAJ_STRA59.655e-1849.40Chaperone protein dnaJ OS=Streptococcus agalactiae... [more]
DNAJ_STRA39.655e-1849.40Chaperone protein dnaJ OS=Streptococcus agalactiae... [more]
DNAJ_STRA19.655e-1849.40Chaperone protein dnaJ OS=Streptococcus agalactiae... [more]
DNAJ_HALOH9.655e-1859.74Chaperone protein dnaJ OS=Halothermothrix orenii (... [more]
DNAJ_DICT69.655e-1852.94Chaperone protein dnaJ OS=Dictyoglomus thermophilu... [more]
DNJB4_BOVIN1.261e-1754.55DnaJ homolog subfamily B member 4 OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_G04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_G04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304838 ID=CB304838; Name=CB304838; organism=Citrus sinensis; type=EST; length=547bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAAAATTGAAGTTAATGC
CTCCGGCCTCACCCACTCCTCCAAAGAGCCCATCTGAACCACCAAAGAAT
GCACTATATAATTCAAAAGGATCCACCCCCTGTGAAGTGTTGCTCAATCC
ATCATATTCTCCAGTCATACCTGCCTCACCAAAGCGATCATATACAAATC
TTTTCTCATCATCTGAAAGGACCTCATACGCAAAACTTATCTCTTTGAAC
TTCTCTTCAGCTCCAGGACTCTTGTTGATATCCGGATGATACTTACAAGC
AAGCTTTCTGTAAAAGGTCTTGATCTCCTGCAACGTGGCATTCTGACAAA
CATTCAAAGTGGAATAGTAATCTGTACCAGCGGCCCTGATCATTCCCCTT
CGATGACTCCGATTATTGCCAAAACAATAATTCCATTTGAAACTGAAACT
CGTACTTAAATGAAGCTTCAAATTGACATAAAATGGACTAGCAATAACGG
GCATACTTCATAAGTTGGGGGCGTTAACAGGAAAAAAAAGGAGTCCC
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