CB304842 | Citrus Genome Database

Overview


Name	CB304842
Unique Name	CB304842
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	547

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.249e-18
Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = -1

Query:  254 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRV 433
            VRSLN AARTT DR+AACNCLK A   + G+    AA +PS+CGV IPY IS STDC RV
Sbjct:   60 VRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119

HSP 2 Score: 31.187 bits (69), Expect = 2.249e-18
Identity = 12/22 (54.55%), Postives = 17/22 (77.27%), Query Frame = -3

Query:  465 AITCGQVTASLAPCIPFLRTGG 530
            AI+CGQV +++APCI + R  G
Sbjct:   28 AISCGQVASAIAPCISYARGQG 49

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 2.944e-18
Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = -1

Query:  263 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDC 433
            +++LN AA TTPDR+ ACNCLK A   I+GI    AAGLP  CGV IPY ISPST+C
Sbjct:   57 IKALNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNC 113

HSP 2 Score: 31.9574 bits (71), Expect = 2.944e-18
Identity = 15/27 (55.56%), Postives = 19/27 (70.37%), Query Frame = -3

Query:  468 APVTNA-ITCGQVTASLAPCIPFLRTG 545
            AP   A ITCG V++ LAPCI +L+ G
Sbjct:   21 APYAEAGITCGMVSSKLAPCIGYLKGG 47

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.829e-18
Identity = 39/61 (63.93%), Postives = 45/61 (73.77%), Query Frame = -1

Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            VR+LN AA TTPDRQAACNCLK A G+I  +  N AA LP +C V IPYKIS ST+C  +R
Sbjct:   55 VRNLNSAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115

HSP 2 Score: 31.5722 bits (70), Expect = 3.829e-18
Identity = 12/22 (54.55%), Postives = 18/22 (81.82%), Query Frame = -3

Query:  468 NAITCGQVTASLAPCIPFLRTG 533
            +AITCG+V  +LAPC+ +L+ G
Sbjct:   23 SAITCGRVDTALAPCLGYLQGG 44

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP1_LENCU (Non-specific lipid-transfer protein 1 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.980e-18
Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = -1

Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            V+ LNGAARTT DR+AACNCLK + G+I G+KP   A LP +CGVR+PY IS ST+C  +R
Sbjct:   57 VKRLNGAARTTIDRRAACNCLKSSAGSISGLKPGNVATLPGKCGVRLPYTISTSTNCNTIR 117

HSP 2 Score: 28.8758 bits (63), Expect = 4.980e-18
Identity = 10/21 (47.62%), Postives = 16/21 (76.19%), Query Frame = -3

Query:  468 AITCGQVTASLAPCIPFLRTG 530
            AI+CG V+ +L PC+ +L+ G
Sbjct:   26 AISCGTVSGALVPCLTYLKGG 46

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLCI (Non-specific lipid-transfer protein 2 OS=Solanum chilense PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.034e-18
Identity = 35/61 (57.38%), Postives = 41/61 (67.21%), Query Frame = -1

Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            V+ L G A+TT DRQAAC CLK A  +   +    AA LPS C V IPYKISPSTDC +V+
Sbjct:   54 VKGLLGQAQTTVDRQAACACLKSAASSFTDLDLGKAASLPSTCNVNIPYKISPSTDCSKVQ 114

HSP 2 Score: 40.4318 bits (93), Expect = 5.034e-18
Identity = 16/27 (59.26%), Postives = 21/27 (77.78%), Query Frame = -3

Query:  465 APVTNAITCGQVTASLAPCIPFLRTGG 545
            AP   A+TCGQVT++LAPC+P+L   G
Sbjct:   19 APHAEALTCGQVTSTLAPCLPYLMNRG 45

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.436e-17
Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = -1

Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            V+ L  AA TTPDRQAACNCLK A G+I  +  N AA LP +CGV IPYKIS ST+C  V+
Sbjct:   49 VKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109

HSP 2 Score: 30.4166 bits (67), Expect = 2.436e-17
Identity = 13/22 (59.09%), Postives = 18/22 (81.82%), Query Frame = -3

Query:  465 AITCGQVTASLAPCIPFLRTGG 530
            AI+CG VT+ L+PC+ +L TGG
Sbjct:   18 AISCGAVTSDLSPCLTYL-TGG 38

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.074e-17
Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = -1

Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            V+ L  AA TTPDRQAACNCLK A G+I  +  N AA LP +CGV IPYKIS ST+C  V+
Sbjct:   57 VKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117

HSP 2 Score: 30.4166 bits (67), Expect = 4.074e-17
Identity = 13/22 (59.09%), Postives = 18/22 (81.82%), Query Frame = -3

Query:  465 AITCGQVTASLAPCIPFLRTGG 530
            AI+CG VT+ L+PC+ +L TGG
Sbjct:   26 AISCGAVTSDLSPCLTYL-TGG 46

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.120e-17
Identity = 33/61 (54.10%), Postives = 45/61 (73.77%), Query Frame = -1

Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            V+ LNG A+TTPDRQ AC CL+ A    +G+ P++A+GLP +CGV IPY IS ST+C  ++
Sbjct:   55 VKKLNGMAQTTPDRQQACRCLQSA---AKGVNPSLASGLPGKCGVSIPYPISTSTNCATIK 112

HSP 2 Score: 34.6538 bits (78), Expect = 4.120e-17
Identity = 15/27 (55.56%), Postives = 19/27 (70.37%), Query Frame = -3

Query:  465 APVTNAITCGQVTASLAPCIPFLRTGG 545
            A V  AITCG V +SL+PC+ +L  GG
Sbjct:   19 ASVDAAITCGTVASSLSPCLGYLSKGG 45

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.298e-17
Identity = 37/60 (61.67%), Postives = 42/60 (70.00%), Query Frame = -1

Query:  254 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRV 433
            VRSLN AA TT DR+ ACNCLK   G+I G+    AA +PS+CGV IPY ISPS DC  V
Sbjct:   58 VRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117

HSP 2 Score: 29.6462 bits (65), Expect = 5.298e-17
Identity = 10/21 (47.62%), Postives = 17/21 (80.95%), Query Frame = -3

Query:  468 AITCGQVTASLAPCIPFLRTG 530
            AI+CGQV ++++PC+ + R G
Sbjct:   27 AISCGQVNSAVSPCLSYARGG 47

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.298e-17
Identity = 37/60 (61.67%), Postives = 42/60 (70.00%), Query Frame = -1

Query:  254 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRV 433
            VRSLN AA TT DR+ ACNCLK   G+I G+    AA +PS+CGV IPY ISPS DC  V
Sbjct:   57 VRSLNSAATTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 116

HSP 2 Score: 29.6462 bits (65), Expect = 5.298e-17
Identity = 10/21 (47.62%), Postives = 17/21 (80.95%), Query Frame = -3

Query:  468 AITCGQVTASLAPCIPFLRTG 530
            AI+CGQV ++++PC+ + R G
Sbjct:   26 AISCGQVNSAVSPCLSYARGG 46

The following BLAST results are available for this feature:

BLAST of CB304842 vs. ExPASy Swiss-Prot

BLAST of CB304842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67


Match Name	E-value	Identity	Description
NLTP_MAIZE	2.249e-18	65.00	Non-specific lipid-transfer protein OS=Zea mays PE...	[more]
NLTP_SPIOL	2.944e-18	63.16	Non-specific lipid-transfer protein OS=Spinacia ol...	[more]
NLTP_CICAR	3.829e-18	63.93	Non-specific lipid-transfer protein OS=Cicer ariet...	[more]
NLTP1_LENCU	4.980e-18	62.30	Non-specific lipid-transfer protein 1 OS=Lens culi...	[more]
NLTP2_SOLCI	5.034e-18	57.38	Non-specific lipid-transfer protein 2 OS=Solanum c...	[more]
NLTP4_LENCU	2.436e-17	62.30	Non-specific lipid-transfer protein 4 (Fragment) O...	[more]
NLTP6_LENCU	4.074e-17	62.30	Non-specific lipid-transfer protein 6 OS=Lens culi...	[more]
NLTP4_ARATH	4.120e-17	54.10	Non-specific lipid-transfer protein 4 OS=Arabidops...	[more]
NLTP2_ORYSI	5.298e-17	61.67	Non-specific lipid-transfer protein 2 OS=Oryza sat...	[more]
NLT2B_ORYSJ	5.298e-17	61.67	Non-specific lipid-transfer protein 2B OS=Oryza sa...	[more]

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Properties


Property Name	Value
Genbank description	FLAVEDO0002_IVaR_H01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_H01 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB304842 ID=CB304842; Name=CB304842; organism=Citrus sinensis; type=EST; length=547bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAGATAATACCACAAAATAAC
TATAATTAATCACTCAAAACACAGATCGCGTTTACATATTTAATATGACA
TAAAAAGCAAATATACAAACTTGACATGAGAGTGAAACTCATACATGTGG
AGACTCGTTCGGACAAAGAAATTAACATAGATATTCTTTATTTATTTATT
CTTCTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTCA
CCTGACCCTAAAGCAGTCGGTGCTGGGGCTGATCTTGTAAGGAATTCTGA
CTCCACATTGACTAGGAAGGCCAGCGGCAACATTAGGTTTGATGCCGCGG
ATTGTTCCGTAAGCTCGTTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGG
GGTGGTTCTGGCGGCGCCGTTGAGAGACCTGACGCNNCTACAGCATGGCG
GTGGAGGAAAAACGCCCTCCAGTTCTCAAGAAAGGGATGCATGGAGCCAA
GGAGGCTGTCACCTGCCCGCATGTTATGGCATTAGTCACCGGGGCAG