CB304852

Overview
NameCB304852
Unique NameCB304852
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_SALNS (L-lactate dehydrogenase [cytochrome] OS=Salmonella newport (strain SL254) GN=lldD PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.088e-26
Identity = 56/138 (40.58%), Postives = 89/138 (64.49%), Query Frame = -3
Query:  230 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPIV 643
            W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EI+ + +V
Sbjct:  239 WIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDLIEKEMKVAMTLTGAKSISEISGDSLV 376          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_SALHS (L-lactate dehydrogenase [cytochrome] OS=Salmonella heidelberg (strain SL476) GN=lldD PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.088e-26
Identity = 56/138 (40.58%), Postives = 89/138 (64.49%), Query Frame = -3
Query:  230 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPIV 643
            W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EI+ + +V
Sbjct:  239 WIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDLIEKEMKVAMTLTGAKSISEISGDSLV 376          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_SALDC (L-lactate dehydrogenase [cytochrome] OS=Salmonella dublin (strain CT_02021853) GN=lldD PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.088e-26
Identity = 56/138 (40.58%), Postives = 89/138 (64.49%), Query Frame = -3
Query:  230 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPIV 643
            W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EI+ + +V
Sbjct:  239 WIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDLIEKEMKVAMTLTGAKSISEISGDSLV 376          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_SALAR (L-lactate dehydrogenase [cytochrome] OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=lldD PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.088e-26
Identity = 56/138 (40.58%), Postives = 89/138 (64.49%), Query Frame = -3
Query:  230 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPIV 643
            W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EI+ + +V
Sbjct:  239 WIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDLIEKEMKVAMTLTGAKSISEISGDSLV 376          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_SALA4 (L-lactate dehydrogenase [cytochrome] OS=Salmonella agona (strain SL483) GN=lldD PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.088e-26
Identity = 56/138 (40.58%), Postives = 89/138 (64.49%), Query Frame = -3
Query:  230 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPIV 643
            W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EI+ + +V
Sbjct:  239 WIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDLIEKEMKVAMTLTGAKSISEISGDSLV 376          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: CYB2_YEAST (Cytochrome b2, mitochondrial OS=Saccharomyces cerevisiae GN=CYB2 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.088e-26
Identity = 62/136 (45.59%), Postives = 88/136 (64.71%), Query Frame = -3
Query:  248 LQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVV-----QAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEI 640
            L+  T LPI++KGV   ED   A + G +G+++SNHG RQLD+  A +  L E +     +  K ++ VF+DGGVRRGTDV KAL LGA GV +GRP  ++ +  G  GV K +++LRDE E++M L G  S+ E+
Sbjct:  418 LKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAEL 553          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_STRM5 (L-lactate dehydrogenase [cytochrome] OS=Stenotrophomonas maltophilia (strain R551-3) GN=lldD PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.727e-26
Identity = 57/138 (41.30%), Postives = 87/138 (63.04%), Query Frame = -3
Query:  230 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPIV 643
            W++     P+++KG+L  +DA  A+++GA GI+VSNHG RQLD V +T  AL  +  A +G + +  D G+R G DV + LALGA  V +GR   ++LA  GEAGV  +L ++  E  + M L+G R + +I R+ +V
Sbjct:  239 WIREFWKGPMVIKGILDPDDARDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVQGDLKILADSGIRTGLDVVRMLALGADTVLLGRAFVYALAAQGEAGVANLLDLIAKEMRVAMTLTGARRIADIGRDSLV 376          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_SALPK (L-lactate dehydrogenase [cytochrome] OS=Salmonella paratyphi A (strain AKU_12601) GN=lldD PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.727e-26
Identity = 56/138 (40.58%), Postives = 89/138 (64.49%), Query Frame = -3
Query:  230 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPIV 643
            W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EI+ + +V
Sbjct:  239 WIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDLVEKEMKVAMTLTGAKSISEISGDSLV 376          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_SALPA (L-lactate dehydrogenase [cytochrome] OS=Salmonella paratyphi A GN=lldD PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.727e-26
Identity = 56/138 (40.58%), Postives = 89/138 (64.49%), Query Frame = -3
Query:  230 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPIV 643
            W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EI+ + +V
Sbjct:  239 WIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDLVEKEMKVAMTLTGAKSISEISGDSLV 376          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_XANC5 (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=lldD PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.561e-26
Identity = 56/137 (40.88%), Postives = 87/137 (63.50%), Query Frame = -3
Query:  233 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPI 643
            W++   + P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + LALGA  V +GR   ++LA  G+AGV  +L ++  E  + M L+G  S+ EI+ + +
Sbjct:  239 WIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAAAGQAGVENLLTLIEKEMRVAMTLTGTHSIAEISADAL 375          
The following BLAST results are available for this feature:
BLAST of CB304852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_SALNS2.088e-2640.58L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALHS2.088e-2640.58L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALDC2.088e-2640.58L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALAR2.088e-2640.58L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALA42.088e-2640.58L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
CYB2_YEAST2.088e-2645.59Cytochrome b2, mitochondrial OS=Saccharomyces cere... [more]
LLDD_STRM52.727e-2641.30L-lactate dehydrogenase [cytochrome] OS=Stenotroph... [more]
LLDD_SALPK2.727e-2640.58L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALPA2.727e-2640.58L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_XANC53.561e-2640.88L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_A10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_A10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304852 ID=CB304852; Name=CB304852; organism=Citrus sinensis; type=EST; length=645bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCATAAAAAGCCCCAAGCC
AAGCCGCACCTCCCTTTATTTAATTAATTCATACATCCTTGTCGTCTTAA
CAAAATGCTAATCCCTGAATCCGGGATTAGGTTATTCGAATCACAGTTGT
TTAAAAATGAAAAGTTTTAATGTTGATGTTGGAGACCATCTTACAATCTG
GCTACAGCTCCTGGAGTGTCCCAATGAGTCACAATGGGGTTGCGTGTAAT
CTCCTTGAGCGAACGGCACCCACTTAATGCCATTGTTAGCTCAAACTCAT
CACGAAGCATCTGAAGCACTTTTCTCACACCAGCCTCTCCATCAACTGCC
AGCGAGAATGGTACTGGCCTTCCAACAAATACTCCAGATGCTCCTAAAGC
CAAAGCCTTGAAGACATCGGTTCCACGACGAACCCCACCATCAAGGAAAA
CAGGAACTCGGCCTTTTGCAGCTTGAACAACCTCTTCCAAAGCCATAACA
GTTGCAGGGACATAATCTAGTTGGCGCGCTCCGTGATTGGATACAATGAT
TCCTGCAGCTCCATATTGTATTGCTAGACTTGCATCCTCAGCAGTAAGAA
CACCCTTCACGAGTATTGGCAGTGAGGTGATTGTTTGAAGCCACT
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