CB304861

Overview
NameCB304861
Unique NameCB304861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_METTM (Superoxide dismutase [Fe] OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) GN=sod PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.478e-12
Identity = 33/88 (37.50%), Postives = 49/88 (55.68%), Query Frame = -2
Query:  325 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWK 588
            FGS +   ++ S    + +GSGW  L       RL +      +  V   P    L+ +DVWEHAYY+ Y+NV+PDY++  WN++NWK
Sbjct:  107 FGSFQRFKKEFSQAAVSAEGSGWAVLTYCQRTDRLFIMQVEKHN--VNVIPHFRILMVLDVWEHAYYIDYRNVRPDYVEAFWNIVNWK 192          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_PSEPU (Superoxide dismutase [Fe] OS=Pseudomonas putida GN=sodB PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 3.237e-12
Identity = 33/95 (34.74%), Postives = 52/95 (54.74%), Query Frame = -2
Query:  304 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVYQ 588
            FGS +   ++ +       GSGW WL    +    +  T     PL T   T  PLL  DVWEHAYY+ Y+N++P Y++  WN++NW + ++ ++
Sbjct:  101 FGSFDKFKEEFTKTSVGTFGSGWGWLVKKADGSLALASTIGAGCPL-TSGDT--PLLTCDVWEHAYYIDYRNLRPKYVEAFWNLVNWAFVAEQFE 192          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_PSEPK (Superoxide dismutase [Fe] OS=Pseudomonas putida (strain KT2440) GN=sodB PE=3 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 3.237e-12
Identity = 33/95 (34.74%), Postives = 52/95 (54.74%), Query Frame = -2
Query:  304 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVYQ 588
            FGS +   ++ +       GSGW WL    +    +  T     PL T   T  PLL  DVWEHAYY+ Y+N++P Y++  WN++NW + ++ ++
Sbjct:  101 FGSFDKFKEEFTKTSVGTFGSGWGWLVKKADGSLALASTIGAGCPL-TSGDT--PLLTCDVWEHAYYIDYRNLRPKYVEAFWNLVNWAFVAEQFE 192          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_PSEAE (Superoxide dismutase [Fe] OS=Pseudomonas aeruginosa GN=sodB PE=3 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 4.227e-12
Identity = 33/91 (36.26%), Postives = 50/91 (54.95%), Query Frame = -2
Query:  316 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYAS 588
            FGS +   ++ +       GSGW WL    +    +  T    +PL T   T  PLL  DVWEHAYY+ Y+N++P Y++  WN++NW + +
Sbjct:  101 FGSFDKFKEEFTKTSVGTFGSGWGWLVKKADGSLALASTIGAGNPL-TSGDT--PLLTCDVWEHAYYIDYRNLRPKYVEAFWNLVNWDFVA 188          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_ENTHI (Superoxide dismutase [Fe] OS=Entamoeba histolytica GN=SODB PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.227e-12
Identity = 34/92 (36.96%), Postives = 54/92 (58.70%), Query Frame = -2
Query:  313 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASD 588
            FG LE   +K + +     GSGW WL ++ + K  +++T    +P+      + PLL  DVWEHAYY+  +N +  YL++ WNV+NWK+  +
Sbjct:  101 FGGLEEFKKKFTEKAVGHFGSGWCWL-VEHDGKLEIIDTHDAVNPMTNG---MKPLLTCDVWEHAYYIDTRNNRAAYLEHWWNVVNWKFVEE 188          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_ARATH (Superoxide dismutase [Fe], chloroplastic OS=Arabidopsis thaliana GN=SODB PE=1 SV=4)

HSP 1 Score: 71.2478 bits (173), Expect = 4.227e-12
Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = -2
Query:  316 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKN-VWNVMNWKYAS 588
            F S E   ++ +A  A   G+GW WL    E K  VV+T    +PLV  +    PLL IDVWEHAYYL ++N +PDY+K  + N+++W+  S
Sbjct:  114 FTSYEKFYEEFNAAAATQFGAGWAWLAYSNE-KLKVVKTPNAVNPLVLGS---FPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVS 201          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_RICFE (Superoxide dismutase [Mn/Fe] OS=Rickettsia felis GN=sodB PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.521e-12
Identity = 36/93 (38.71%), Postives = 50/93 (53.76%), Query Frame = -2
Query:  313 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLK-NVWNVMNWKYASD 588
            FGS E   ++   E     GSGW WL       RL +  TAN    +     + PLL  DVWEHAYY+ Y+N +PDY+   + +++NWK+  D
Sbjct:  117 FGSFEGFCEQFKQEAVGQFGSGWAWLVYHDN--RLQIIKTANAGTPIANG--MKPLLACDVWEHAYYIDYRNKRPDYVDIFIKHMINWKFVED 205          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_BABBO (Superoxide dismutase [Fe] OS=Babesia bovis GN=SODB PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.521e-12
Identity = 42/103 (40.78%), Postives = 53/103 (51.46%), Query Frame = -2
Query:  280 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVYQKECP*AWS 588
            FGS  A     S   A   GSGW WL L  +    +V+T     PL  K     PLL  DVWEHAYY+ YKN +  Y+ + WN++NW +A+     E P  WS
Sbjct:  101 FGSFSAFKTDFSNLLAGHFGSGWGWLVLKDDGTADIVQTHDAGSPL--KENLGRPLLCCDVWEHAYYIDYKNDRLSYINSWWNLVNWDFANK--NLEAPFKWS 199          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_STRCO (Superoxide dismutase [Fe-Zn] 1 OS=Streptomyces coelicolor GN=sodF1 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 7.210e-12
Identity = 36/95 (37.89%), Postives = 52/95 (54.74%), Query Frame = -2
Query:  304 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVYQ 588
            FGS      +++   A  QGSGW  L  +    RL+VE   +    V +  T  P+L  D WEHA+YLQYKN K D++  +W V+NW+  +  Y+
Sbjct:  108 FGSFAGFRAQLTKAAATTQGSGWGVLAYEPLSGRLIVEQIYDHQGNVGQGST--PILVFDAWEHAFYLQYKNQKVDFIDAMWAVVNWQDVARRYE 200          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_RICCN (Superoxide dismutase [Mn/Fe] OS=Rickettsia conorii GN=sodB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.417e-12
Identity = 37/93 (39.78%), Postives = 51/93 (54.84%), Query Frame = -2
Query:  313 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLK-NVWNVMNWKYASD 588
            FGS E   ++   E     GSGW WL       RL +  TAN    +  A  + PLL  DVWEHAYY+ Y+N +PDY+   + +++NWK+  D
Sbjct:  117 FGSFEEFCEQFKQEAVGQFGSGWAWLIYHDN--RLQIIKTANAGTPI--AHGMKPLLACDVWEHAYYIDYRNKRPDYVDIFIKHMINWKFVED 205          
The following BLAST results are available for this feature:
BLAST of CB304861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
SODF_METTM2.478e-1237.50Superoxide dismutase [Fe] OS=Methanobacterium ther... [more]
SODF_PSEPU3.237e-1234.74Superoxide dismutase [Fe] OS=Pseudomonas putida GN... [more]
SODF_PSEPK3.237e-1234.74Superoxide dismutase [Fe] OS=Pseudomonas putida (s... [more]
SODF_PSEAE4.227e-1236.26Superoxide dismutase [Fe] OS=Pseudomonas aeruginos... [more]
SODF_ENTHI4.227e-1236.96Superoxide dismutase [Fe] OS=Entamoeba histolytica... [more]
SODF_ARATH4.227e-1242.39Superoxide dismutase [Fe], chloroplastic OS=Arabid... [more]
SODF_RICFE5.521e-1238.71Superoxide dismutase [Mn/Fe] OS=Rickettsia felis G... [more]
SODF_BABBO5.521e-1240.78Superoxide dismutase [Fe] OS=Babesia bovis GN=SODB... [more]
SODF_STRCO7.210e-1237.89Superoxide dismutase [Fe-Zn] 1 OS=Streptomyces coe... [more]
SODF_RICCN9.417e-1239.78Superoxide dismutase [Mn/Fe] OS=Rickettsia conorii... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_B11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_B11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304861 ID=CB304861; Name=CB304861; organism=Citrus sinensis; type=EST; length=592bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAACCCAATCATACATATT
CACAGATCCGTGCTCATAGTGAGATACAAAAAGAGCATAAACCCCAATAT
TATTTTGGATGTCACATAAGGGATACACAAGTAACACTCACTGCAAAAGA
AAGGGTGTCTGTCATCAGTTGCAAATTATCGTTTTATTGTCACTTCAGCG
TGAAAAGCTGCAAGGGTATTCGCCTCTTGAACCCAAGAGAGAACCCAGAT
CAAACAAAGAACTCCATGCTCAAGGAAGAGCTCCAAGCTTAAGGGCATTC
TTTCTGATACACATCACTAGCATACTTCCAGTTCATTACGTTCCAAACGT
TTTTCAGATAATCTGGTTTGACATTCTTGTACTGTAGGTAGTATGCATGC
TCCCAAACATCTATACCAAGCAAAGGAACCAGAGTTGGGGCTTTAGTCAC
CAGTGGATCCTGATTTGCAGTAGTTTCAACCACAAGCCTTTTGAACTCTG
TATCTAAACCAAGCCACACCCATCCAGAGCCCTGCAAAGCTGCACCCTCA
GCACTCATCTTTTGTATCAATGCTTCCAGAGAACCAAAATGC
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