CB304861

Overview
NameCB304861
Unique NameCB304861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6145 contig Csv1_Contig6145:453..1044. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_PEA (Superoxide dismutase [Mn], mitochondrial OS=Pisum sativum GN=SODA PE=2 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 6.476e-37
Identity = 75/98 (76.53%), Postives = 86/98 (87.76%), Query Frame = -2
Query:  298 HFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVYQKE 591
            +FGSLEALIQK++AEGAALQ     WLGLD + KRLVVETT  QDPLVTK  +LVPLLGIDVWEHAYYLQYKNV+PDYLKN+W V+NWK+AS+VY+KE
Sbjct:  141 NFGSLEALIQKINAEGAALQ-----WLGLDKDLKRLVVETT--QDPLVTKGASLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKHASEVYEKE 231          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_DICDI (Superoxide dismutase [Mn], mitochondrial OS=Dictyostelium discoideum GN=sod2 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.107e-28
Identity = 57/94 (60.64%), Postives = 70/94 (74.47%), Query Frame = -2
Query:  307 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVY 588
            +GS+E LI+KMSAE  A+QGSGW WLG D    RLV++T  NQDPL       VPLLGIDVWEHAYYL YKNV+ DY+KN+W ++NWK  ++ Y
Sbjct:  130 YGSIEKLIEKMSAETTAIQGSGWGWLGYDKANDRLVIQTQQNQDPLSVSG--YVPLLGIDVWEHAYYLDYKNVRADYVKNIWQIVNWKNVAERY 221          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_RAT (Superoxide dismutase [Mn], mitochondrial OS=Rattus norvegicus GN=Sod2 PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 6.717e-26
Identity = 54/94 (57.45%), Postives = 66/94 (70.21%), Query Frame = -2
Query:  307 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVY 588
            FGS E   +K++A    +QGSGW WLG + E  RL +   +NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK +WNV+NW+  S  Y
Sbjct:  125 FGSFEKFKEKLTAVSVGVQGSGWGWLGFNKEQGRLQIAACSNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVSQRY 217          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_MOUSE (Superoxide dismutase [Mn], mitochondrial OS=Mus musculus GN=Sod2 PE=1 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 8.773e-26
Identity = 53/94 (56.38%), Postives = 67/94 (71.28%), Query Frame = -2
Query:  307 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVY 588
            FGS E   +K++A    +QGSGW WLG + E  RL +   +NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK +WNV+NW+  ++ Y
Sbjct:  125 FGSFEKFKEKLTAVSVGVQGSGWGWLGFNKEQGRLQIAACSNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 217          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_HORSE (Superoxide dismutase [Mn], mitochondrial OS=Equus caballus GN=SOD2 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.496e-25
Identity = 53/94 (56.38%), Postives = 67/94 (71.28%), Query Frame = -2
Query:  307 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVY 588
            FGS +   +K++A  A +QGSGW WLG + +  RL +    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK +WNV+NW+  S+ Y
Sbjct:  125 FGSFDKFKEKLTAVSAGVQGSGWGWLGFNKDQGRLQIVACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVSERY 217          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_ONCVO (Superoxide dismutase [Mn], mitochondrial OS=Onchocerca volvulus GN=sod-2 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.553e-25
Identity = 53/96 (55.21%), Postives = 67/96 (69.79%), Query Frame = -2
Query:  301 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVYQK 588
            FGSLE +I K++A+  A+QGSGW WL  D E KRL +    NQD L+     L+PL  IDVWEHAYYLQYKN++PD++K +W + NWK  SD Y K
Sbjct:  126 FGSLETMIDKLNAKTIAIQGSGWGWLAYDKEMKRLQLACCPNQD-LLEPTTGLIPLFCIDVWEHAYYLQYKNLRPDFVKAIWKIANWKIISDRYIK 220          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_MACMU (Superoxide dismutase [Mn], mitochondrial OS=Macaca mulatta GN=SOD2 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 3.334e-25
Identity = 52/94 (55.32%), Postives = 66/94 (70.21%), Query Frame = -2
Query:  307 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVY 588
            FGS E   +K++A    +QGSGW WLG + E  +L +    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK +WNV+NW+  ++ Y
Sbjct:  101 FGSFEKFKEKLTAASVGVQGSGWGWLGFNKERGQLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_MACFU (Superoxide dismutase [Mn], mitochondrial OS=Macaca fuscata fuscata GN=SOD2 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 3.334e-25
Identity = 52/94 (55.32%), Postives = 66/94 (70.21%), Query Frame = -2
Query:  307 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVY 588
            FGS E   +K++A    +QGSGW WLG + E  +L +    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK +WNV+NW+  ++ Y
Sbjct:  101 FGSFEKFKEKLTAASVGVQGSGWGWLGFNKERGQLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_MACFA (Superoxide dismutase [Mn], mitochondrial OS=Macaca fascicularis GN=SOD2 PE=2 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 3.334e-25
Identity = 52/94 (55.32%), Postives = 66/94 (70.21%), Query Frame = -2
Query:  307 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVY 588
            FGS E   +K++A    +QGSGW WLG + E  +L +    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK +WNV+NW+  ++ Y
Sbjct:  125 FGSFEKFKEKLTAASVGVQGSGWGWLGFNKERGQLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 217          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_MACNE (Superoxide dismutase [Mn], mitochondrial OS=Macaca nemestrina GN=SOD2 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.354e-25
Identity = 52/94 (55.32%), Postives = 66/94 (70.21%), Query Frame = -2
Query:  307 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVY 588
            FGS E   +K++A    +QGSGW WLG + E  +L +    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK +WNV+NW+  ++ Y
Sbjct:  125 FGSFEKYKEKLTAASVGVQGSGWGWLGFNKERGQLQIAACLNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 217          
The following BLAST results are available for this feature:
BLAST of CB304861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
SODM_PEA6.476e-3776.53Superoxide dismutase [Mn], mitochondrial OS=Pisum ... [more]
SODM_DICDI1.107e-2860.64Superoxide dismutase [Mn], mitochondrial OS=Dictyo... [more]
SODM_RAT6.717e-2657.45Superoxide dismutase [Mn], mitochondrial OS=Rattus... [more]
SODM_MOUSE8.773e-2656.38Superoxide dismutase [Mn], mitochondrial OS=Mus mu... [more]
SODM_HORSE1.496e-2556.38Superoxide dismutase [Mn], mitochondrial OS=Equus ... [more]
SODM_ONCVO2.553e-2555.21Superoxide dismutase [Mn], mitochondrial OS=Onchoc... [more]
SODM_MACMU3.334e-2555.32Superoxide dismutase [Mn], mitochondrial OS=Macaca... [more]
SODM_MACFU3.334e-2555.32Superoxide dismutase [Mn], mitochondrial OS=Macaca... [more]
SODM_MACFA3.334e-2555.32Superoxide dismutase [Mn], mitochondrial OS=Macaca... [more]
SODM_MACNE4.354e-2555.32Superoxide dismutase [Mn], mitochondrial OS=Macaca... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_B11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_B11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304861 ID=CB304861; Name=CB304861; organism=Citrus sinensis; type=EST; length=592bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAACCCAATCATACATATT
CACAGATCCGTGCTCATAGTGAGATACAAAAAGAGCATAAACCCCAATAT
TATTTTGGATGTCACATAAGGGATACACAAGTAACACTCACTGCAAAAGA
AAGGGTGTCTGTCATCAGTTGCAAATTATCGTTTTATTGTCACTTCAGCG
TGAAAAGCTGCAAGGGTATTCGCCTCTTGAACCCAAGAGAGAACCCAGAT
CAAACAAAGAACTCCATGCTCAAGGAAGAGCTCCAAGCTTAAGGGCATTC
TTTCTGATACACATCACTAGCATACTTCCAGTTCATTACGTTCCAAACGT
TTTTCAGATAATCTGGTTTGACATTCTTGTACTGTAGGTAGTATGCATGC
TCCCAAACATCTATACCAAGCAAAGGAACCAGAGTTGGGGCTTTAGTCAC
CAGTGGATCCTGATTTGCAGTAGTTTCAACCACAAGCCTTTTGAACTCTG
TATCTAAACCAAGCCACACCCATCCAGAGCCCTGCAAAGCTGCACCCTCA
GCACTCATCTTTTGTATCAATGCTTCCAGAGAACCAAAATGC
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