CB304861

Overview
NameCB304861
Unique NameCB304861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_BUCAI (Superoxide dismutase [Mn] OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=sodA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.395e-15
Identity = 42/100 (42.00%), Postives = 63/100 (63.00%), Query Frame = -2
Query:  301 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVYQK 588
            FG+++   +K  +      GSGWVWL        +V  +T NQD PL+ K  +     P++G+D+WEHAYYL+Y+N + DY+K+ WNV+NW+ AS+  QK
Sbjct:  106 FGTIDEFKEKFESVALNHFGSGWVWLVNQNGVLSIV--STVNQDSPLMGKLISNTYGYPIIGLDIWEHAYYLKYQNRRLDYIKSFWNVVNWEEASNRLQK 203          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODB_ASPNG (Superoxide dismutase [Mn], mitochondrial OS=Aspergillus niger GN=sodB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.128e-15
Identity = 38/94 (40.43%), Postives = 55/94 (58.51%), Query Frame = -2
Query:  307 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVY 588
            +GS++       A    +QGSGW WL    +   L + TT +QDP+       +P+ G+D+WEHAYYLQY N K  Y++N+W V+NW+ A   Y
Sbjct:  109 WGSVKNFTDAFEAVLLGIQGSGWGWLVSSGKTGFLEIVTTKDQDPVTGP----IPVFGVDMWEHAYYLQYLNNKASYVQNIWKVINWEEAEHRY 198          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_MYCTU (Superoxide dismutase [Fe] OS=Mycobacterium tuberculosis GN=sodB PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.552e-14
Identity = 40/88 (45.45%), Postives = 53/88 (60.23%), Query Frame = -2
Query:  328 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNW 588
            FGS +    +  A    +QGSGW  LG DT   +L++    +     T  P  +VPLL +D+WEHA+YLQYKNVK D+ K  WNV+NW
Sbjct:  103 FGSFDKFRAQFHAAATTVQGSGWAALGWDTLGNKLLIFQVYDHQ---TNFPLGIVPLLLLDMWEHAFYLQYKNVKVDFAKAFWNVVNW 187          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_MYCBO (Superoxide dismutase [Fe] OS=Mycobacterium bovis GN=sodB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.552e-14
Identity = 40/88 (45.45%), Postives = 53/88 (60.23%), Query Frame = -2
Query:  328 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNW 588
            FGS +    +  A    +QGSGW  LG DT   +L++    +     T  P  +VPLL +D+WEHA+YLQYKNVK D+ K  WNV+NW
Sbjct:  103 FGSFDKFRAQFHAAATTVQGSGWAALGWDTLGNKLLIFQVYDHQ---TNFPLGIVPLLLLDMWEHAFYLQYKNVKVDFAKAFWNVVNW 187          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_MYCKA (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium kansasii GN=sodA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.027e-14
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = -2
Query:  328 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNW 588
            FGS +    +  A    +QGSGW  LG DT   +L++    +     T  P  ++PLL +D+WEHA+YLQYKNVK D+ K  WNV+NW
Sbjct:   77 FGSFDKFRAQFHAAATTVQGSGWAALGWDTLGNKLLIFQVYDHQ---TNFPLGIIPLLLLDMWEHAFYLQYKNVKVDFAKAFWNVVNW 161          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_PROFR (Superoxide dismutase [Mn/Fe] OS=Propionibacterium freudenreichii subsp. shermanii GN=sodA PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.458e-14
Identity = 39/87 (44.83%), Postives = 52/87 (59.77%), Query Frame = -2
Query:  328 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNW 588
            FGS + +  + +A    +QGSGW  L  D   KR  + T    D         +PLL +D+WEHA+YLQYKNVK DY+K+ WNV+NW
Sbjct:  104 FGSFDNMKAQFTAAATGIQGSGWASLVWDPLGKR--INTLQFYDHQNNLPAGSIPLLQLDMWEHAFYLQYKNVKGDYVKSWWNVVNW 188          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_HELPY (Superoxide dismutase [Fe] OS=Helicobacter pylori GN=sodB PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.458e-14
Identity = 36/96 (37.50%), Postives = 56/96 (58.33%), Query Frame = -2
Query:  304 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRL-VVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVYQ 588
            FGSLE   +        L GSGW W   + + +++ +++T+  Q P+  K    VPLL +DVWEHAYY+ +KN +P YL+  +  +NW + S  Y+
Sbjct:   99 FGSLEKFKEDFIKSATTLFGSGWNWAAYNLDTQKIEIIQTSNAQTPVTDKK---VPLLVVDVWEHAYYIDHKNARPVYLEKFYGHINWHFVSQCYE 191          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_HELPJ (Superoxide dismutase [Fe] OS=Helicobacter pylori J99 GN=sodB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.458e-14
Identity = 36/96 (37.50%), Postives = 56/96 (58.33%), Query Frame = -2
Query:  304 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRL-VVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVYQ 588
            FGSLE   +        L GSGW W   + + +++ +++T+  Q P+  K    VPLL +DVWEHAYY+ +KN +P YL+  +  +NW + S  Y+
Sbjct:   99 FGSLEKFKEDFIKSATTLFGSGWNWAAYNLDTQKIEIIQTSNAQTPVTDKK---VPLLVVDVWEHAYYIDHKNARPVYLEKFYGHVNWHFVSQCYE 191          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_SALTY (Superoxide dismutase [Fe] OS=Salmonella typhimurium GN=sodB PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.516e-14
Identity = 35/91 (38.46%), Postives = 52/91 (57.14%), Query Frame = -2
Query:  316 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYAS 588
            FGS      + +       GSGW WL    + K  +V T+    PL T A    PLL +DVWEHAYY+ Y+N +P+YL++ W ++NW++ +
Sbjct:  101 FGSFAEFKAQFTDAAIKNFGSGWTWLVKSADGKLAIVSTSNAGTPLTTDA---TPLLTVDVWEHAYYIDYRNARPNYLEHFWALVNWEFVA 188          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_SALTI (Superoxide dismutase [Fe] OS=Salmonella typhi GN=sodB PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.516e-14
Identity = 35/91 (38.46%), Postives = 52/91 (57.14%), Query Frame = -2
Query:  316 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYAS 588
            FGS      + +       GSGW WL    + K  +V T+    PL T A    PLL +DVWEHAYY+ Y+N +P+YL++ W ++NW++ +
Sbjct:  101 FGSFAEFKAQFTDAAIKNFGSGWTWLVKSADGKLAIVSTSNAGTPLTTDA---TPLLTVDVWEHAYYIDYRNARPNYLEHFWALVNWEFVA 188          
The following BLAST results are available for this feature:
BLAST of CB304861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
SODM_BUCAI2.395e-1542.00Superoxide dismutase [Mn] OS=Buchnera aphidicola s... [more]
SODB_ASPNG3.128e-1540.43Superoxide dismutase [Mn], mitochondrial OS=Asperg... [more]
SODF_MYCTU1.552e-1445.45Superoxide dismutase [Fe] OS=Mycobacterium tubercu... [more]
SODF_MYCBO1.552e-1445.45Superoxide dismutase [Fe] OS=Mycobacterium bovis G... [more]
SODM_MYCKA2.027e-1444.32Superoxide dismutase [Mn] (Fragment) OS=Mycobacter... [more]
SODM_PROFR3.458e-1444.83Superoxide dismutase [Mn/Fe] OS=Propionibacterium ... [more]
SODF_HELPY3.458e-1437.50Superoxide dismutase [Fe] OS=Helicobacter pylori G... [more]
SODF_HELPJ3.458e-1437.50Superoxide dismutase [Fe] OS=Helicobacter pylori J... [more]
SODF_SALTY4.516e-1438.46Superoxide dismutase [Fe] OS=Salmonella typhimuriu... [more]
SODF_SALTI4.516e-1438.46Superoxide dismutase [Fe] OS=Salmonella typhi GN=s... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_B11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_B11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304861 ID=CB304861; Name=CB304861; organism=Citrus sinensis; type=EST; length=592bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAACCCAATCATACATATT
CACAGATCCGTGCTCATAGTGAGATACAAAAAGAGCATAAACCCCAATAT
TATTTTGGATGTCACATAAGGGATACACAAGTAACACTCACTGCAAAAGA
AAGGGTGTCTGTCATCAGTTGCAAATTATCGTTTTATTGTCACTTCAGCG
TGAAAAGCTGCAAGGGTATTCGCCTCTTGAACCCAAGAGAGAACCCAGAT
CAAACAAAGAACTCCATGCTCAAGGAAGAGCTCCAAGCTTAAGGGCATTC
TTTCTGATACACATCACTAGCATACTTCCAGTTCATTACGTTCCAAACGT
TTTTCAGATAATCTGGTTTGACATTCTTGTACTGTAGGTAGTATGCATGC
TCCCAAACATCTATACCAAGCAAAGGAACCAGAGTTGGGGCTTTAGTCAC
CAGTGGATCCTGATTTGCAGTAGTTTCAACCACAAGCCTTTTGAACTCTG
TATCTAAACCAAGCCACACCCATCCAGAGCCCTGCAAAGCTGCACCCTCA
GCACTCATCTTTTGTATCAATGCTTCCAGAGAACCAAAATGC
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