CB304861

Overview
NameCB304861
Unique NameCB304861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6145 contig Csv1_Contig6145:453..1044. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM2_CAEEL (Superoxide dismutase [Mn] 2, mitochondrial OS=Caenorhabditis elegans GN=sod-3 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 9.079e-23
Identity = 51/92 (55.43%), Postives = 64/92 (69.57%), Query Frame = -2
Query:  313 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASD 588
            FGSL+ L +++S    A+QGSGW WLG   + K L + T ANQDPL      +VPL GIDVWEHAYYLQYKNV+PDY+  +W + NWK  S+
Sbjct:  124 FGSLDNLQKRLSDITIAVQGSGWGWLGYCKKDKILKIATCANQDPL----EGMVPLFGIDVWEHAYYLQYKNVRPDYVHAIWKIANWKNISE 211          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_AGABI (Superoxide dismutase [Mn], mitochondrial OS=Agaricus bisporus GN=sod PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.686e-22
Identity = 47/94 (50.00%), Postives = 65/94 (69.15%), Query Frame = -2
Query:  307 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVY 588
            FG L+ L ++ +   A +QGSGW WLG++   KRL + TT NQDPL+     LVP++G+D+WEHA+YLQY NVK DYL  +W+V+N+  A   Y
Sbjct:  102 FGGLDNLKKEFNTTTAGIQGSGWGWLGVNPSNKRLEISTTPNQDPLLN----LVPIIGVDIWEHAFYLQYLNVKADYLNAIWSVINFDEAQRRY 191          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_CHLMU (Superoxide dismutase [Mn] OS=Chlamydia muridarum GN=sodA PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.311e-21
Identity = 47/90 (52.22%), Postives = 66/90 (73.33%), Query Frame = -2
Query:  322 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKY 588
            +GS +  ++   +  AA+QGSGW WL    + + L+++TTANQDPL  +A T ++PLLG+DVWEHAYYLQYKN + DYLKN  +++NW Y
Sbjct:  108 WGSFDNFLKNFISSSAAVQGSGWGWLAFCPKKQELMIQTTANQDPL--EATTGMIPLLGVDVWEHAYYLQYKNARLDYLKNFPSIINWDY 195          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_CHLTR (Superoxide dismutase [Mn] OS=Chlamydia trachomatis GN=sodA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.921e-21
Identity = 47/90 (52.22%), Postives = 65/90 (72.22%), Query Frame = -2
Query:  322 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKY 588
            +GS +  ++      AA+QGSGW WL    + + L+V+TTANQDPL  +A T ++PLLG+DVWEHAYYLQYKN + DYLK+  +++NW Y
Sbjct:  108 WGSFDNFLKNFITSSAAVQGSGWGWLAFCPQKQELMVQTTANQDPL--EATTGMIPLLGVDVWEHAYYLQYKNARMDYLKSFPSIINWDY 195          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_CAVPO (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Cavia porcellus GN=SOD2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.229e-20
Identity = 46/85 (54.12%), Postives = 58/85 (68.24%), Query Frame = -2
Query:  334 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVM 588
            FGS +   +K++A    +QGSGW WLG + E   L +   +NQDPL      L+PLLGIDVWEHAYYLQ KNV+PDYLK +W V+
Sbjct:  125 FGSFDKFKEKLTAVSVGVQGSGWGWLGFNKERGCLQIAACSNQDPL-QGTTGLIPLLGIDVWEHAYYLQLKNVRPDYLKAIWKVI 208          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_CHLPN (Superoxide dismutase [Mn] OS=Chlamydia pneumoniae GN=sodA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.217e-20
Identity = 45/96 (46.88%), Postives = 64/96 (66.67%), Query Frame = -2
Query:  301 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVYQK 588
            +G+++  ++K+    A +QGSGW WLG     + LV++ TANQDPL      L PLLG+DVWEHAYYLQYKNV+ DYLK    ++NW +  + + +
Sbjct:  108 WGTMDNFLKKLIEVAAGVQGSGWAWLGFCPAKQELVLQATANQDPLEPLTGKL-PLLGVDVWEHAYYLQYKNVRMDYLKAFPQIINWGHIENRFSE 202          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_CANAL (Superoxide dismutase [Mn], mitochondrial OS=Candida albicans GN=SOD2 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.395e-20
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = -2
Query:  319 FGSLEALIQKMSAEGAALQGSGWVWLGLD-TEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYA 588
            FGSL+ LI+  + + A +QGSGW ++  +      + V TTANQD +    P LVPL+ ID WEHAYYLQY+NVK DY KN+W+V+NWK A
Sbjct:  140 FGSLDKLIEITNGKLAGIQGSGWAFIVKNKANGDTIDVITTANQDTVTD--PNLVPLIAIDAWEHAYYLQYQNVKADYFKNLWHVINWKEA 228          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_SCHPO (Superoxide dismutase [Mn], mitochondrial OS=Schizosaccharomyces pombe GN=sod2 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.227e-19
Identity = 47/94 (50.00%), Postives = 63/94 (67.02%), Query Frame = -2
Query:  307 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVY 588
            +GSLE   ++M+A  A++QGSGW WL +D +   L + TTANQD +V   P    ++GID WEHAYY QY+N K +Y K +WNV+NWK A   Y
Sbjct:  127 WGSLEDFQKEMNAALASIQGSGWAWLIVDKDGS-LRITTTANQDTIVKSKP----IIGIDAWEHAYYPQYENRKAEYFKAIWNVINWKEAESRY 215          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_DROME (Superoxide dismutase [Mn], mitochondrial OS=Drosophila melanogaster GN=Sod2 PE=2 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 1.227e-19
Identity = 44/94 (46.81%), Postives = 62/94 (65.96%), Query Frame = -2
Query:  301 SLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVYQK 582
            SLE   ++++    A+QGSGW WLG + +  +L +    NQDPL      L+PL GIDVWEHAYYLQYKNV+P Y++ +W++ NW   S  +Q+
Sbjct:  119 SLEEFKKELTTLTVAVQGSGWGWLGFNKKSGKLQLAALPNQDPLEASTG-LIPLFGIDVWEHAYYLQYKNVRPSYVEAIWDIANWDDISCRFQE 211          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_STAXY (Superoxide dismutase [Mn/Fe] OS=Staphylococcus xylosus GN=sodA PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.663e-19
Identity = 43/94 (45.74%), Postives = 64/94 (68.09%), Query Frame = -2
Query:  307 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVY 588
            +GSL+A  ++ + + AA  GSGW WL ++     L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+   ++Y
Sbjct:  106 WGSLDAFKEEFADKAAARFGSGWAWLVVNNG--NLEIVTTPNQDNPITEGKT--PILGLDVWEHAYYLKYQNKRPDYISAFWNVVNWEKVDELY 195          
The following BLAST results are available for this feature:
BLAST of CB304861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
SODM2_CAEEL9.079e-2355.43Superoxide dismutase [Mn] 2, mitochondrial OS=Caen... [more]
SODM_AGABI7.686e-2250.00Superoxide dismutase [Mn], mitochondrial OS=Agaric... [more]
SODM_CHLMU1.311e-2152.22Superoxide dismutase [Mn] OS=Chlamydia muridarum G... [more]
SODM_CHLTR2.921e-2152.22Superoxide dismutase [Mn] OS=Chlamydia trachomatis... [more]
SODM_CAVPO3.229e-2054.12Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM_CHLPN4.217e-2046.88Superoxide dismutase [Mn] OS=Chlamydia pneumoniae ... [more]
SODM_CANAL9.395e-2052.75Superoxide dismutase [Mn], mitochondrial OS=Candid... [more]
SODM_SCHPO1.227e-1950.00Superoxide dismutase [Mn], mitochondrial OS=Schizo... [more]
SODM_DROME1.227e-1946.81Superoxide dismutase [Mn], mitochondrial OS=Drosop... [more]
SODM_STAXY4.663e-1945.74Superoxide dismutase [Mn/Fe] OS=Staphylococcus xyl... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_B11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_B11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304861 ID=CB304861; Name=CB304861; organism=Citrus sinensis; type=EST; length=592bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAACCCAATCATACATATT
CACAGATCCGTGCTCATAGTGAGATACAAAAAGAGCATAAACCCCAATAT
TATTTTGGATGTCACATAAGGGATACACAAGTAACACTCACTGCAAAAGA
AAGGGTGTCTGTCATCAGTTGCAAATTATCGTTTTATTGTCACTTCAGCG
TGAAAAGCTGCAAGGGTATTCGCCTCTTGAACCCAAGAGAGAACCCAGAT
CAAACAAAGAACTCCATGCTCAAGGAAGAGCTCCAAGCTTAAGGGCATTC
TTTCTGATACACATCACTAGCATACTTCCAGTTCATTACGTTCCAAACGT
TTTTCAGATAATCTGGTTTGACATTCTTGTACTGTAGGTAGTATGCATGC
TCCCAAACATCTATACCAAGCAAAGGAACCAGAGTTGGGGCTTTAGTCAC
CAGTGGATCCTGATTTGCAGTAGTTTCAACCACAAGCCTTTTGAACTCTG
TATCTAAACCAAGCCACACCCATCCAGAGCCCTGCAAAGCTGCACCCTCA
GCACTCATCTTTTGTATCAATGCTTCCAGAGAACCAAAATGC
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