CB304861

Overview
NameCB304861
Unique NameCB304861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6145 contig Csv1_Contig6145:453..1044. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_LISIN (Superoxide dismutase [Mn] OS=Listeria innocua GN=sodA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.722e-17
Identity = 40/91 (43.96%), Postives = 61/91 (67.03%), Query Frame = -2
Query:  316 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYAS 588
            FG+ +   +K +A  AA  GSGW WL ++    +L + +TANQD  ++   T  P+LG+DVWEHAYYL+++N +P+Y+   WNV+NW  A+
Sbjct:  109 FGTFDDFKEKFNAAAAARFGSGWAWLVVNNG--KLEIVSTANQDSPLSDGKT--PVLGLDVWEHAYYLKFQNRRPEYIDTFWNVVNWDEAN 195          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_METJ (Superoxide dismutase [Mn/Fe] OS=Methylomonas J GN=sodB PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.722e-17
Identity = 42/95 (44.21%), Postives = 60/95 (63.16%), Query Frame = -2
Query:  301 GSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVYQK 585
            G L+   +  +       GSGW WL +  E K+LVVE+T NQD  ++   T  P+LG+DVWEHAYYL+Y+N +P+Y+   +NV+NW   S  YQ+
Sbjct:  108 GGLDTFKEAFTKAALTRFGSGWAWLSVTPE-KKLVVESTGNQDSPLSTGNT--PILGLDVWEHAYYLKYQNRRPEYIGAFFNVVNWDEVSRRYQE 199          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_ENTFA (Superoxide dismutase [Fe] OS=Enterococcus faecalis GN=sodA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.270e-16
Identity = 39/94 (41.49%), Postives = 58/94 (61.70%), Query Frame = -2
Query:  307 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVY 588
            FGS + +            GSGW WL ++    +L + +T NQD  +    T  P+LG+DVWEHAYYL+YKNV+PDY++  WNV+NW   ++++
Sbjct:  109 FGSFDEMKAAFKTAATGRFGSGWAWLVVNNG--KLEITSTPNQDSPLMDGQT--PVLGLDVWEHAYYLKYKNVRPDYIEAFWNVVNWDKVNELF 198          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_ECOLI (Superoxide dismutase [Mn] OS=Escherichia coli (strain K12) GN=sodA PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.270e-16
Identity = 43/95 (45.26%), Postives = 63/95 (66.32%), Query Frame = -2
Query:  316 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYAS 588
            FGS++    +     A+  GSGW WL L  +  +L V +TANQD PL+ +A    +  P++G+DVWEHAYYL+++N +PDY+K  WNV+NW  A+
Sbjct:  107 FGSVDNFKAEFEKAAASRFGSGWAWLVLKGD--KLAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAA 199          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_STRMU (Superoxide dismutase [Mn/Fe] OS=Streptococcus mutans GN=sodA PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 1.658e-16
Identity = 42/94 (44.68%), Postives = 59/94 (62.77%), Query Frame = -2
Query:  307 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVY 588
            FGS +      +A      GSGW WL +D E K L V +TANQD  +++   L P+L +DVWEHAYYL Y+NV+P+Y+K  + V+NW   + +Y
Sbjct:  107 FGSFDDFKAAFTAAATTRFGSGWAWLVVDKEGK-LEVTSTANQDTPISQG--LKPILALDVWEHAYYLNYRNVRPNYIKAFFEVINWNTVARLY 197          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_MYCFO (Superoxide dismutase [Mn] OS=Mycobacterium fortuitum GN=sodA PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.166e-16
Identity = 42/94 (44.68%), Postives = 57/94 (60.64%), Query Frame = -2
Query:  307 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVY 588
            FGS +    + +A    LQGSGW  LG D+   RL+     +Q   V     ++PLL +D+WEHA+YLQYKNVK DY+K  WNV+NW+   + Y
Sbjct:  103 FGSFDKFQAQFTAAANGLQGSGWAVLGYDSLGDRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYKNVKADYVKAFWNVVNWEDVQNRY 194          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_NOCAS (Superoxide dismutase [Mn] OS=Nocardia asteroides GN=sodA PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.829e-16
Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = -2
Query:  301 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVYQK 588
            FGS +    + +A    LQGSGW  LG DT  ++L+     +Q   V     ++PLL +D+WEHA+YLQYKNVK DY+   WNV+NW    D + K
Sbjct:  103 FGSFDKFRAQFTAAANGLQGSGWAVLGYDTLGQKLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYKNVKADYVTAFWNVVNWADVQDRFGK 196          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_PENCH (Superoxide dismutase [Mn], mitochondrial OS=Penicillium chrysogenum GN=SOD PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.695e-16
Identity = 44/95 (46.32%), Postives = 59/95 (62.11%), Query Frame = -2
Query:  307 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFK-RLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVY 588
            +GS EA ++   AE   LQGSGW WL      K RL + TT +QDP+   AP  VP+ G+D+WEHAYYLQY N K  Y++ +W +++W  A   Y
Sbjct:  109 WGSHEAFVKAFGAELLGLQGSGWGWLVSKGGAKGRLEIVTTKDQDPV--NAPD-VPVFGVDMWEHAYYLQYLNNKAGYVEGIWKIIHWAEAEKRY 200          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_ASPFU (Superoxide dismutase [Mn], mitochondrial OS=Aspergillus fumigatus GN=sodB PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 3.695e-16
Identity = 40/94 (42.55%), Postives = 54/94 (57.45%), Query Frame = -2
Query:  307 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVY 588
            +GS +      +     +QGSGW WL  D    +L + TT +QDP+   AP    + G+D+WEHAYYLQY N K  Y K +WNV+NW  A + Y
Sbjct:  108 WGSFDKFKDAFNTTLLGIQGSGWGWLVTDGPKGKLDITTTHDQDPVTGAAP----VFGVDMWEHAYYLQYLNDKASYAKGIWNVINWAEAENRY 197          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_CHAFE (Superoxide dismutase [Mn], mitochondrial OS=Charybdis feriatus PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.825e-16
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = -2
Query:  352 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYKNVKPDYLK 588
            FGS+E +  ++SA+  A+QGSGW WLG   E   L + T  NQDPL  +A T LVPL GIDVWEHAYYLQYKNV+   LK
Sbjct:  120 FGSVENMKNQLSAQTVAVQGSGWGWLGYIAE-GALQIATCPNQDPL--EATTGLVPLFGIDVWEHAYYLQYKNVRRIMLK 196          
The following BLAST results are available for this feature:
BLAST of CB304861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
SODM_LISIN9.722e-1743.96Superoxide dismutase [Mn] OS=Listeria innocua GN=s... [more]
SODF_METJ9.722e-1744.21Superoxide dismutase [Mn/Fe] OS=Methylomonas J GN=... [more]
SODM_ENTFA1.270e-1641.49Superoxide dismutase [Fe] OS=Enterococcus faecalis... [more]
SODM_ECOLI1.270e-1645.26Superoxide dismutase [Mn] OS=Escherichia coli (str... [more]
SODM_STRMU1.658e-1644.68Superoxide dismutase [Mn/Fe] OS=Streptococcus muta... [more]
SODM_MYCFO2.166e-1644.68Superoxide dismutase [Mn] OS=Mycobacterium fortuit... [more]
SODM_NOCAS2.829e-1643.75Superoxide dismutase [Mn] OS=Nocardia asteroides G... [more]
SODM_PENCH3.695e-1646.32Superoxide dismutase [Mn], mitochondrial OS=Penici... [more]
SODM_ASPFU3.695e-1642.55Superoxide dismutase [Mn], mitochondrial OS=Asperg... [more]
SODM_CHAFE4.825e-1658.75Superoxide dismutase [Mn], mitochondrial OS=Charyb... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_B11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_B11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304861 ID=CB304861; Name=CB304861; organism=Citrus sinensis; type=EST; length=592bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAACCCAATCATACATATT
CACAGATCCGTGCTCATAGTGAGATACAAAAAGAGCATAAACCCCAATAT
TATTTTGGATGTCACATAAGGGATACACAAGTAACACTCACTGCAAAAGA
AAGGGTGTCTGTCATCAGTTGCAAATTATCGTTTTATTGTCACTTCAGCG
TGAAAAGCTGCAAGGGTATTCGCCTCTTGAACCCAAGAGAGAACCCAGAT
CAAACAAAGAACTCCATGCTCAAGGAAGAGCTCCAAGCTTAAGGGCATTC
TTTCTGATACACATCACTAGCATACTTCCAGTTCATTACGTTCCAAACGT
TTTTCAGATAATCTGGTTTGACATTCTTGTACTGTAGGTAGTATGCATGC
TCCCAAACATCTATACCAAGCAAAGGAACCAGAGTTGGGGCTTTAGTCAC
CAGTGGATCCTGATTTGCAGTAGTTTCAACCACAAGCCTTTTGAACTCTG
TATCTAAACCAAGCCACACCCATCCAGAGCCCTGCAAAGCTGCACCCTCA
GCACTCATCTTTTGTATCAATGCTTCCAGAGAACCAAAATGC
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